Limit : this year
all time today this week this month this year
1,000 results • Page 2 of 20
Sort: Votes
Rank Views Votes Replies
7
votes
4
replies
1.4k
views
Error: missing values and NaN's not allowed if 'na.rm' is FALSE
Genome Software
10 months ago by sunnykevin97 ▴ 970
7
votes
10
replies
1.3k
views
Ubuntu 20.04 Crash
Ubuntu
updated 3 months ago by 39k • written 16 months ago by • 0
7
votes
8
replies
3.4k
views
remove duplicated entries from BLAST result file
blast alignment
updated 5 months ago by 39k • written 8.0 years ago by ▴ 170
7
votes
5
replies
3.7k
views
Trinity de novo transcript assembly too many transcripts
RNA-Seq Assembly
updated 10 months ago by 39k • written 8.0 years ago by ▴ 800
7
votes
7
replies
1.6k
views
LRT test with DESeq2 and how to interpret the results
significant LRT DESeq2 genes RNA-Seq
updated 10 months ago by ★ 1.1k • written 13 months ago by ▴ 20
7
votes
7
replies
4.4k
views
RNA-Seq time series analysis using a DESeq2 spline approach yields far too many significant genes
splines DESeq2 time-series RNA-Seq
updated 5 days ago by 39k • written 4.4 years ago by ▴ 80
7
votes
16
replies
2.1k
views
Insert size selection for RNASeq data: does it make sense?
RNA-Seq sequencing
updated 9 weeks ago by 39k • written 5.7 years ago by ★ 3.6k
7
votes
10
replies
1.2k
views
col as names [solved]
R
updated 11 weeks ago by 39k • written 4.2 years ago by ▴ 90
7
votes
8
replies
3.2k
views
DEseq2 design matrix with 3 factors
rna-seq deseq2 Forum
updated 11 months ago by ★ 1.1k • written 3.0 years ago by ▴ 60
7
votes
4
replies
1.4k
views
microarray gene datasets
gene
updated 4 months ago by 39k • written 8.1 years ago by ▴ 60
7
votes
8
replies
2.4k
views
Discrepency between number of reads tophat
RNA-Seq tophat software-error
updated 8 months ago by 39k • written 7.8 years ago by ▴ 380
7
votes
7
replies
823
views
Nextflow rnaseq finishing early
RNA-seq nextflow
updated 9 weeks ago by 39k • written 9 weeks ago by ★ 1.4k
7
votes
5
replies
2.3k
views
using machine learning regards to ribo-seq data sets
gene-regulatory-network ribo-seq machine-learning
updated 7 months ago by 39k • written 7.8 years ago by ★ 4.2k
6
votes
1
reply
2.0k
views
gene expression in bioinformatics
gene-expression
updated 8 months ago by 39k • written 7.8 years ago by • 0
6
votes
9
replies
4.8k
views
Best Possible set of Python interview questions for Bioinformatics, that a recruiter can ask?
python
updated 10 weeks ago by 39k • written 8.1 years ago by ▴ 10
6
votes
2
replies
1.7k
views
Periodicity in SNP calling quality - is this normal?
RNA-Seq VCF GATK SNP
updated 8 months ago by 39k • written 7.7 years ago by 13k
6
votes
6
replies
3.6k
views
Already Working In The Field Of Bioinformatics With A Bachelors, Is A Masters Degree Worth The Time?
masters career
updated 3 months ago by 39k • written 9.7 years ago by ▴ 30
6
votes
6
replies
4.5k
views
MSD calculations vs time
MDsimulation python computational-biology
updated 6 months ago by 39k • written 7.9 years ago by ▴ 30
6
votes
6
replies
1.2k
views
paired read or not paired read
RNA-Seq
updated 5 months ago by 39k • written 8.1 years ago by ★ 4.2k
6
votes
10
replies
892
views
Understanding bam tracks
RNA sequencing bam
updated 9 months ago by 154k • written 9 months ago by ▴ 30
6
votes
3
replies
407
views
trimmomatic and STAR alignments
trimmomatic STAR RNAseq sequencing reads
updated 4 weeks ago by ▴ 140 • written 8 weeks ago by ▴ 20
6
votes
4
replies
422
views
Equivalent to SeqMan alignment tool
SeqMan alignments
3 months ago by A_heath ▴ 140
6
votes
7
replies
4.2k
views
8 follow
desktop bioinformatics platform specs
hardware desktop
updated 5 months ago by 39k • written 8.0 years ago by ▴ 610
6
votes
6
replies
3.0k
views
What does it mean for a snp to be enriched?
next-gen R SNP genome
updated 10 months ago by 39k • written 7.3 years ago by ▴ 40
6
votes
3
replies
3.2k
views
Comment On The Introduction Of A Bioinformatics Paper
publication bayesian-model
updated 3 months ago by 39k • written 9.2 years ago by ▴ 210
6
votes
5
replies
5.0k
views
MA plots DESeq: strange MA plots
RNA-Seq MAplot DESeq
updated 6 months ago by 39k • written 7.9 years ago by ★ 1.1k
6
votes
14
replies
2.7k
views
mapping RNAseq reads to a genbank isoforme that is not in Reference Annotation
RNA-Seq sequence cufflinks new isoform in rnaseq
updated 10 months ago by 39k • written 7.3 years ago by • 0
6
votes
12
replies
1.3k
views
VCF files 101 - for people from non Bioinformatics Background
vcf sequencing genome variant-calling
updated 11 weeks ago by 39k • written 2.8 years ago by ▴ 20
6
votes
3
replies
2.1k
views
vcf-merge gives empty output or run forever
vcf-merge vcftools
updated 10 months ago by 39k • written 7.3 years ago by • 0
6
votes
11
replies
921
views
Calculate RPKM
RPKM
10 weeks ago by Chris ▴ 100
6
votes
7
replies
878
views
to mark the duplicates
Assembly
updated 11 weeks ago by 39k • written 4.0 years ago by ▴ 10
6
votes
6
replies
570
views
On "wings" in volcano plots...
DEG volcano DGE statistics DE
updated 16 days ago by 72k • written 17 days ago by ▴ 120
6
votes
4
replies
428
views
Tools for strand direction detection RNA-Seq
Rna-seq strandedness
updated 6 months ago by 6.0k • written 6 months ago by ▴ 40
6
votes
15
replies
1.1k
views
The Best Cloud Solution For Genomics
cloud data-sharing genomics workflow
updated 10 months ago by 39k • written 11 months ago by ▴ 50
6
votes
7
replies
1.4k
views
Bioinformatics Master Project With More Focus on Developing Algorithm and Software
Masters Algorithm Software
updated 23 days ago by 39k • written 6.0 years ago by ▴ 90
6
votes
7
replies
4.5k
views
Creation Of A .Bed File From .Txt
plink
updated 9 weeks ago by 39k • written 9.3 years ago by • 0
6
votes
6
replies
3.2k
views
Bowtie2 classification of discordantly mapped pairs
discordant-pairs bowtie2 alignment
updated 9 months ago by 39k • written 7.7 years ago by ▴ 30
6
votes
7
replies
2.3k
views
Standardizing the language of lab protocols [Current status]
protocols automation
updated 8 months ago by 39k • written 7.7 years ago by ▴ 20
6
votes
7
replies
5.9k
views
best alignment tool for Ion Torrent data
chloroplast genome iontorrent
updated 9 months ago by 39k • written 7.5 years ago by ★ 2.3k
6
votes
7
replies
1.1k
views
The size of the genome in pb of an organism before sequencing?
sequencing genome
updated 9 weeks ago by 39k • written 4.6 years ago by • 0
6
votes
12
replies
590
views
Help with error in cellranger
Cellranger
updated 19 days ago by 129k • written 20 days ago by ▴ 100
6
votes
2
replies
497
views
Need to Modify this
language R
updated 5 months ago by 72k • written 5 months ago by • 0
6
votes
3
replies
1.7k
views
PLINK results interpretation
SNP software-error
updated 8 months ago by 39k • written 7.9 years ago by ▴ 40
6
votes
9
replies
958
views
Error when runing Bowtie2: (ERR): bowtie2-align exited with value 1
BAM Bowtie
updated 24 days ago by 39k • written 4 months ago by ▴ 40
6
votes
4
replies
2.5k
views
Trouble renaming output files after running PHYLIP programs from a BASH script
PHYLIP sequence software-error
updated 10 months ago by 39k • written 7.5 years ago by ▴ 880
6
votes
6
replies
4.3k
views
Performance of circRNA detection tools
RNA-Seq circRNA
updated 7 months ago by 39k • written 7.8 years ago by ▴ 240
6
votes
13
replies
6.0k
views
DESeq2 and edgeR - no agreement between results
RNA-Seq edgeR DESeq2
updated 10 months ago by 39k • written 7.5 years ago by ▴ 60
6
votes
6
replies
961
views
RNA-seq pipeline for degraded RNA
RNA-Seq degraded pipeline alignment
updated 3 months ago by ▴ 80 • written 2.4 years ago by ▴ 60
6
votes
6
replies
2.7k
views
ChIP-Seq Intensity Analysis
R ChIP-Seq
updated 18 days ago by 39k • written 5.5 years ago by ▴ 20
6
votes
5
replies
1.8k
views
the gene_id column is different for each sample when counting fpkm in galaxy cufflinks
RNA-Seq galaxy cufflinks fpkm
updated 10 months ago by 39k • written 7.5 years ago by ★ 4.2k
1,000 results • Page 2 of 20
Recent Votes
Answer: I need help with a blast command, please help
Answer: I need help with a blast command, please help
Answer: NCBI API, Perl
Get a list of genes associated with a drug in 1 min
Answer: Getting species names and taxa id from assembly accession number
Pseudogenes-Can we use them?
Comment: If RNA-seq includes miRNA genes then why are there miRNA specific pipelines?
Recent Locations • All
United States, just now
Brazil, 1 minute ago
United States, 2 minutes ago
Boston, 3 minutes ago
Cambridge, MA, 3 minutes ago
Republic of Ireland, 3 minutes ago
South Korea, 4 minutes ago
Recent Awards • All
Popular Question to Beth • 0
Teacher to antonioggsousa 2.8k
Teacher to Kevin Blighe 85k
Popular Question to bioinfo_ga ▴ 50
Popular Question to english.server ▴ 290
Teacher to Pierre Lindenbaum 154k
Voter to pilargmarch ▴ 100
Recent Replies
Comment: I need help with a blast command, please help by neto.pvp • 0
Thank you very much!! I'm new to this subject and I believe your answer gave me a great idea of where to go next, thanks again!!
Answer: NCBI API, Perl by GenoMax 129k
You are likely best served by using `NCBI datasets` ([**LINK**][1]) or `EntrezDirect` ([**LINK**][2]) command line tools. If you want to …
Comment: Obtain a --gene-trans-map file after rnaSPAdes by GenoMax 129k
You could try to create one: https://groups.google.com/g/trinityrnaseq-users/c/qPbWnLl4iY0 While this is from an unrelated software the so…
Comment: CNNScoreVariants Error by Pierre Lindenbaum 154k
that is another question
Comment: Difference between USCS exon coordinates and ensembl by amy__ ▴ 50
Hi @atpoint, I went to http://genome.ucsc.edu/cgi-bin/hgTables and did: 1. ![enter image description here][1] then: 2. ![enter image…
Comment: should non-protein-coding rna(e.g. lncRNA) be removed in RNA-Seq differential ex by Kermit ▴ 80
See also: https://www.biostars.org/p/9535550/#9536086
Answer: Getting species names and taxa id from assembly accession number by MirianT_NCBI ▴ 590
Hi, As an alternative, you could use [NCBI Datasets][1] for this task. NCBI Datasets allows users to retrieve metadata reports in JSON or…
Comment: Optimum setting for local blastp for ~10K sequences by sodiumnitrate ▴ 20
Thank you for the info! It turned out that running all 10k at once is actually faster than running one or two at a time!
Answer: Installation of PPFinder by GenoMax 129k
Since the software is still [**listed on the Brent lab**][1] website your best bet would be to email the investigator and ask that they fix…
Comment: How to calculate TPM from featureCounts output by rpolicastro 12k
If you want to go that route, yes.
Comment: Difference between USCS exon coordinates and ensembl by ATpoint 72k
What did you download from UCSC? 1-off usually means one file is zero-based and the other 1-based. BED files from UCSC are 0-based, Ensembl…
Comment: Alignment of case vs. control from different origin by sativus • 0
Thank you kindly for the explanation, it is highly appreciated. I suppose i was a bit confused as you quite often see people validating the…
Answer: Gene enrichment analysis by nux ▴ 10
Hello. For this you have to select 'hyper' as your method and then provide a complete list of genes which both include the candidate and no…
Comment: CNNScoreVariants Error by bestone ▴ 10
Thank you for replying I updated it worked but it gives another Error A USER ERROR has occurred: Invalid argument ' -V'.
Comment: Impute haplotypes (ImputePipelinePlugin) execution error - PHG by jrodrigu • 0
Thank you so much. I made the suggested changes. However, I still have the same problem. Please check the new log file. https://github.c…
Traffic: 2860 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6