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358 results • Page
1 of 8
Sort: Rank
Rank
Views
Votes
Replies
0
votes
0
replies
123
views
Tutorial:
How to start disease research quickly and easily?
proteins
pathways
disease
research-design
genes
3 days ago by
Coremine Medical
▴ 10
1
vote
0
replies
124
views
Tutorial:
Get a list of genes associated with a drug in 1 min
drug
genes
drug-targets
updated 3 days ago by
Ram
39k • written 3 days ago by
Coremine Medical
▴ 10
3
votes
0
replies
337
views
Tutorial:
How to make a heatmap in R and deep understand it
heatmap
r
5 weeks ago by
Ming Tommy Tang
★ 2.9k
34
votes
17
replies
15k
views
12 follow
Tutorial:
Machine Learning For Cancer Classification - Part 3 - Predicting With A Random Forest Classifier
machine-learning
classification
updated 5 weeks ago by
GenoMax
130k • written 9.6 years ago by
Obi Griffith
20k
2
votes
0
replies
472
views
Tutorial:
ChIP-Seq Analysis Tutorial
Epigenetics
Bowtie2
MACS2
ChIP-Seq
Motif
updated 11 weeks ago by
ATpoint
73k • written 11 weeks ago by
Simon
▴ 40
1
vote
0
replies
289
views
Tutorial:
List of Machine Learning-Based Scoring Function Papers
machine_learning
papers
scoring_function
docking
12 weeks ago by
Milad
▴ 10
3
votes
2
replies
2.1k
views
Tutorial:
Continuing Education (Pipelines): Best blogs, Online Lectures, Workshops, etc..
conferences
Workshops
updated 27 days ago by
Ram
39k • written 6.1 years ago by
jnowacki
▴ 100
7
votes
3
replies
1.2k
views
Tutorial:
Automated dbSNP lookup by rsID position, plus genome build liftover
rsid
hg19
liftover
hg38
dbsnp
updated 8 weeks ago by
Randy H
▴ 100 • written 10 months ago by
Kevin Blighe
85k
3
votes
3
replies
1.7k
views
Tutorial:
Generating count matrix for STAR counts in GDC v32.0 for RNA-Seq
GDC
TCGABiolinks
STAR
updated 3 months ago by
Ram
39k • written 14 months ago by
dare_devil
★ 3.1k
1
vote
0
replies
479
views
Tutorial:
Analysis of Smart-Seq3 data with kallisto-bustools
single-cell
kallisto
transcriptomics
smart-seq3
pipeline
4 months ago by
firestar
★ 1.5k
10
votes
7
replies
1.4k
views
Tutorial:
Sequence Alignment from Scratch with BWA
alignment
bwa
DNA
10 weeks ago by
barslmn
★ 1.6k
1
vote
1
reply
798
views
Tutorial:
Converting TSV file to VCF
vcf
preprocessing
frequency
updated 4 months ago by
Pierre Lindenbaum
155k • written 4 months ago by
barslmn
★ 1.6k
1
vote
0
replies
741
views
Tutorial:
Prediction of Ribosomal RNA Genes Using RNAmmer Software
rRNA
RNAmmer
Annotation
Genome
5 months ago by
Dr.Animo
▴ 50
1
vote
0
replies
626
views
Tutorial:
GEO data mining (III) - Gene pathway enrichment analysis with complete code sharing
geo
mining
enrichment
data
Gene
pathway
RNA-Seq
R
5 months ago by
Novogene
▴ 300
1
vote
0
replies
752
views
Tutorial:
GEO Data Mining (II) - Differential gene expression analysis and visualization with complete code sharing
geo
mining
differential
data
expression
RNA-Seq
gene
R
5 months ago by
Novogene
▴ 300
2
votes
0
replies
569
views
Tutorial:
GEO data mining (IB) - Downloading Sequence Read Archive (SRA) raw data
geo
mining
datasets
data
SRA
RNA-Seq
5 months ago by
Novogene
▴ 300
4
votes
0
replies
1.3k
views
Tutorial:
How to download GEO data Quickly and easily
geo
RNA-Seq
R
data-mining
3 months ago by
Novogene
▴ 300
49
votes
1
reply
6.6k
views
Tutorial:
Basic normalization, batch correction and visualization of RNA-seq data
edger
RNA-seq
updated 3 months ago by
Ram
39k • written 2.7 years ago by
ATpoint
73k
1
vote
3
replies
519
views
Tutorial:
Gibbs Sampling Algorithm Implementation for Searching DNA Motifs
montecarlo
DNA
motif
gibbssampling
splice
10 weeks ago by
barslmn
★ 1.6k
82
votes
21
replies
75k
views
13 follow
Tutorial:
How to Install SamTools, HTSLib, and BCFTools on Ubuntu 18.04
bcftools
samtools
htslib
updated 3 months ago by
cmdcolin
★ 3.0k • written 4.9 years ago by
otwtgin2010
▴ 540
72
votes
60
replies
24k
views
16 follow
Tutorial:
Produce PCA bi-plot for 1000 Genomes Phase III in VCF format (old)
1000genomes
PLINK
PCA
VCF
updated 3 months ago by
Ram
39k • written 5.7 years ago by
Kevin Blighe
85k
82
votes
28
replies
28k
views
19 follow
Tutorial:
How to create a mutation landscape (waterfall) plot with GenVisR
BioConductor
GenVisR
Graphics
R
updated 3 months ago by
Ram
39k • written 7.2 years ago by
Obi Griffith
20k
12
votes
31
replies
5.1k
views
6 follow
Tutorial:
gene set filter/selection for training ab initio annotation tools
geneset
genome
gene
abinitio
updated 3 months ago by
Ram
39k • written 3.8 years ago by
Juke34
7.9k
1
vote
2
replies
757
views
Tutorial:
ViennaRNA package installation in Windows
install
mfold
viennarna
rna
windows
updated 8 months ago by
Asaf
9.6k • written 8 months ago by
Sandhiya
▴ 20
1
vote
0
replies
417
views
Tutorial:
Making LDA Score plot
LDA
metagenomics
8 months ago by
rohitsatyam102
▴ 690
130
votes
123
replies
30k
views
23 follow
Tutorial:
Survival analysis with gene expression
cox
gene-expression
survival-analysis
geo
updated 11 weeks ago by
1769mkc
★ 1.1k • written 4.6 years ago by
Kevin Blighe
85k
11
votes
7
replies
7.4k
views
Tutorial:
ClusterProfiler A software for functional enrichment of differentially expressed genes- A tutorial
clusterProfiler
Software
rna-seq
updated 20 days ago by
Ram
39k • written 2.3 years ago by
Novogene
▴ 300
14
votes
1
reply
2.7k
views
Tutorial:
Dealing with nanopore fast5 files compressed with vbz
hdf5
nanopore
fast5
vbz
MinKNOW
updated 9 months ago by
Assa Yeroslaviz
★ 1.8k • written 17 months ago by
dariober
14k
14
votes
9
replies
4.4k
views
6 follow
Tutorial:
Setting up Aspera Connect (ascp) on Linux and macOS
aspera
ascp
updated 5 weeks ago by
sjlee4019
• 0 • written 11 months ago by
ATpoint
73k
83
votes
21
replies
16k
views
16 follow
Tutorial:
Gene Set Enrichment Analysis
microarray
enrichment
RNA-Seq
GSEA
updated 3 months ago by
Ram
39k • written 2.6 years ago by
Hamid Ghaedi
2.9k
27
votes
0
replies
2.9k
views
Tutorial:
Building Docker images
singularity
docker
container
10 months ago by
ATpoint
73k
1
vote
1
reply
28k
views
Tutorial:
Docker denied: requested access to the resource is denied
docker
updated 10 months ago by
Vincent Laufer
★ 2.9k • written 10 months ago by
kodwings
▴ 10
83
votes
34
replies
16k
views
22 follow
Tutorial:
Enrichment Analysis, Clustering and Scoring with pathfindR
enrichment
R
pathway
active-subnetwork
updated 13 days ago by
adelheidkratzer
• 0 • written 5.0 years ago by
egeulgen
★ 1.3k
80
votes
2
replies
54k
views
Tutorial:
How To Ask Good Questions On Technical And Scientific Forums
how-to
updated 3 months ago by
Ram
39k • written 10.0 years ago by
Eric Normandeau
11k
15
votes
5
replies
11k
views
6 follow
Tutorial:
Easy way to do GO enrichment in R
enrichr
RNA-Seq
gene
R
updated 3 months ago by
Ram
39k • written 5.5 years ago by
ahmad mousavi
▴ 750
38
votes
8
replies
10k
views
10 follow
Tutorial:
Methylation Analysis Tutorial in R_part1
cancer
R
methylation
updated 3 months ago by
Ram
39k • written 2.7 years ago by
Hamid Ghaedi
2.9k
3
votes
2
replies
1.7k
views
Tutorial:
Running fastq_screen on your data
fastqscreen
14 months ago by
rohitsatyam102
▴ 690
7
votes
14
replies
2.4k
views
6 follow
Tutorial:
Install required dependencies for GATK4 on remote server without root privilege
gatk
updated 7 months ago by
Angelina_G
• 0 • written 15 months ago by
thehung92phuyen
▴ 30
73
votes
14
replies
14k
views
15 follow
Tutorial:
List Of Bioinformatics Books
books
updated 4 months ago by
Ram
39k • written 10.1 years ago by
Medhat
9.6k
27
votes
13
replies
8.3k
views
9 follow
Tutorial:
How to get FASTQ reads from the Short Read Archive (SRA)
fastq
sra
updated 16 months ago by
liorglic
★ 1.2k • written 20 months ago by
Istvan Albert
98k
3
votes
13
replies
10k
views
Tutorial:
Merging multiple vcf files into Single vcf file
merge
vcf
bcftools
updated 3 months ago by
Ram
39k • written 4.3 years ago by
jaybee
▴ 140
16
votes
9
replies
4.7k
views
Tutorial:
TCGA transcriptome data to R (DESeq2)
TCGA
GDC
DESeq2
updated 12 months ago by
dk0319
▴ 70 • written 18 months ago by
Barry Digby
★ 1.1k
2
votes
0
replies
1.2k
views
Tutorial:
Free Book : Computational Biology of a cell signalling pathway using R
cell-signalling
R
Computational-Biology
updated 8 days ago by
Ram
39k • written 17 months ago by
sinha.shriprakash
▴ 20
0
votes
0
replies
9.5k
views
Tutorial:
Using PatMatch to search for nucleic and protein sequence patterns and integrate the results with Python/Jupyter for downstream analysis
Jupyter
Python
pattern
17 months ago by
Wayne
★ 1.8k
12
votes
4
replies
4.7k
views
Tutorial:
*FREE course* Bioinformatics for Biologists: An Introduction to Linux, Bash Scripting, and R
linux
R
updated 4 months ago by
Ram
39k • written 2.3 years ago by
garden_giessen
▴ 120
26
votes
10
replies
63k
views
9 follow
Tutorial:
Installing an updated R version (>=4.0) using conda
software-error
R
updated 3 months ago by
Ram
39k • written 2.2 years ago by
Nitin Narwade
★ 1.3k
6
votes
2
replies
2.9k
views
Tutorial:
Unsupervised clustering on gene expression data
gene
RNA-seq
expression
clustering
8 months ago by
Hamid Ghaedi
2.9k
42
votes
6
replies
19k
views
Tutorial:
Greatly speed up conda by using mamba
software
updated 16 months ago by
cameron.cowan
▴ 40 • written 2.2 years ago by
rpolicastro
12k
146
votes
69
replies
44k
views
19 follow
Tutorial:
Network plot from expression data in R using igraph
microarray
RNA-Seq
R
network
updated 9 weeks ago by
k001
▴ 10 • written 5.5 years ago by
Kevin Blighe
85k
15
votes
2
replies
1.6k
views
Tutorial:
Germline variant calling pipeline using Snakemake
snakemake
GATK
germline_variant_calling
updated 7 months ago by
brunobsouzaa
▴ 810 • written 20 months ago by
nhaus
▴ 280
358 results • Page
1 of 8
Recent Votes
Tools To Calculate Average Coverage For A Bam File?
Comment: conda: command not found: gatk.
Answer: Finding Enhancers using Genomation library
Comment: If I execute "AddOrReplaceReadGroups" on a sarted and duplicate-marked .bam fil
Answer: Extract variants/SNPs with T>G substitution from a VCF file
Comment: ChatGPT optimized for bioinformatics questions
Comment: ChatGPT optimized for bioinformatics questions
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Recent Awards •
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Popular Question
to
nishimalhotra2612
▴ 50
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to
Omics data mining
▴ 220
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to
666billgaytes
▴ 10
Teacher
to
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▴ 110
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bestone
▴ 20
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to
Papyrus
★ 2.5k
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to
dariober
14k
Recent Replies
Comment: Can I send my PyMol results to a web-page as a result for a submitted query? If
by
Aatif Hashmi
• 0
Basically I only want to show bases with disulphide bonds. like imagine I have a disulphide bond at 68 cys residue along with 145 cys. I …
Answer: How do I specify the Recalibration_data.table for "PrintReads" in GATK 4.3, if t
by
Pierre Lindenbaum
155k
do you want ApplyBQSR "Apply base quality score recalibration " ? https://gatk.broadinstitute.org/hc/en-us/articles/360036856671-ApplyBQSR
Answer: target vs. bait BED files for Illumina WES
by
Sounkou-bioinfo
• 0
Hi @jacorvar , did you find the answer to that question ?
Comment: ChatGPT optimized for bioinformatics questions
by
Dr William Klubinski
▴ 100
That's an excellent point. A significant number of students are engaged in academic misconduct due to the use of fabricated references and …
Comment: Filtering content in heatmap to highest values
by
Papyrus
★ 2.5k
You mean something like this? depends on how you define "top" row or column # Create example (it is a data.table) ListerTFHeat <- …
Comment: conda: command not found: gatk.
by
666billgaytes
▴ 10
Could there be an issue with your OS? I find a lot of colleagues having problems with Mac OS and much less if none at all on Windows.
Comment: ChatGPT optimized for bioinformatics questions
by
Dr William Klubinski
▴ 100
Great initiative :D
Answer: Extract variants/SNPs with T>G substitution from a VCF file
by
4galaxy77
2.7k
Use ```bcftools view``` with the `-i` flag for including variants. ``` bcftools view -i'REF=="T" & AlT == "G"' ```
Comment: A question about the raw RNA-seq processing workflow
by
Dr William Klubinski
▴ 100
Hi there, the `Segmentation fault (core dumped)` seems to be related to memory issues. I would check the `core dump` that has been created …
Comment: Ensembl vep singularity
by
Ben_Ensembl
★ 2.2k
Hi Kiran - there is a description of downloading and running VEP with Singularity 3.5+ in the following blog post: https://www.ensembl.inf…
Comment: conda: command not found: gatk.
by
bestone
▴ 20
Is there anyone who can help me with this?
Comment: conda: command not found: gatk.
by
bestone
▴ 20
oops I didn't know I was going to evaluate them there, thanks for the warning, now I will evaluate them all. pls, could you pls with this i…
Comment: conda: command not found: gatk.
by
Pierre Lindenbaum
155k
> how about all your previous questions ? take a time to validate the good answers
Comment: conda: command not found: gatk.
by
bestone
▴ 20
I was using gatk before, but conda env create -n gatk -f gatkcondaenv.yml didn't run this command, so I wanted to delete gatk and install t…
Comment: conda: command not found: gatk.
by
Pierre Lindenbaum
155k
how about all your previous questions ? take a time to validate the good answers (green mark on the left). https://www.biostars.org/p/9565…
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