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questions
0
votes
0
replies
446
views
Extracting list of mutations from .tsv file and arrange them in protein specific with binary 0 (Absent) and 1 (Present) values
bash
scripting
awk
Python
2.4 years ago by
k.kathirvel93
▴ 310
1
vote
3
replies
782
views
Merge two .fastq files from two different lane
loop
NGS
merge
fastq
cat
updated 2.6 years ago by
GenoMax
145k • written 2.6 years ago by
k.kathirvel93
▴ 310
1
vote
4
replies
1.2k
views
Where I can get pipeline for covid genome assembly?
pipeline
assembly
Covid
genome
updated 2.7 years ago by
Friederike
9.0k • written 2.7 years ago by
k.kathirvel93
▴ 310
0
votes
1
reply
807
views
How to obtain consensus fasta sequence from fasta file converted from BAM file?
Assembly
fasta
BAMtofasta
updated 2.7 years ago by
cpad0112
21k • written 2.7 years ago by
k.kathirvel93
▴ 310
0
votes
2
replies
793
views
Bowtie BAM to Fasta extraction: Only mapped reads in single contig
genome
BAM
fasta
assembly
Covid
2.7 years ago by
k.kathirvel93
▴ 310
8
votes
10
replies
2.8k
views
How to remove sequence reads contains more than 1 X from multifasta file?
sequence
sequencing
updated 4.4 years ago by
manojkumarbioinfo
▴ 100 • written 4.4 years ago by
k.kathirvel93
▴ 310
1
vote
4
replies
2.9k
views
Phylogenetic tree construction from MAFFT aligned large genome dataset ?
alignment
sequence
genome
updated 4.4 years ago by
Anand Rao
▴ 640 • written 4.4 years ago by
k.kathirvel93
▴ 310
0
votes
3
replies
1.6k
views
how to remove specific sequences from multi-fasta file which contains N ?
genome
sequencing
sequence
alignment
4.4 years ago by
k.kathirvel93
▴ 310
0
votes
1
reply
458
views
extract only reads repeated more than 10 times from BLASTp excel sheet output
Assembly
alignment
sequence
4.4 years ago by
k.kathirvel93
▴ 310
3
votes
2
replies
1.7k
views
Sort header from the multifasta sequnce file into only gene name
genome
alignment
sequencing
sequence
gene
updated 4.4 years ago by
gayachit
▴ 200 • written 4.4 years ago by
k.kathirvel93
▴ 310
4
votes
7
replies
3.0k
views
How to extract sequences from multi fasta file, which contains specific primers?
Assembly
genome
next-gen
sequencing
sequence
updated 4.4 years ago by
karl.stamm
4.1k • written 4.4 years ago by
k.kathirvel93
▴ 310
0
votes
0
replies
672
views
Can anyone suggest me "How to predict smallRNAs from p.aeruginosa whole genome data"?
genome
next-gen
sequencing
sequence
updated 5.3 years ago by
Biostar
20 • written 5.4 years ago by
k.kathirvel93
▴ 310
0
votes
1
reply
1.2k
views
How to label Phage, resistance and virulence genes name in BRIG blast ring ?
genome
next-gen
sequencing
sequence
gene
5.3 years ago by
k.kathirvel93
▴ 310
0
votes
0
replies
745
views
how to find RT- qPCR data for perticular SEQC RNA-seq data set?
RNA-Seq
rna-seq
next-gen
genome
5.6 years ago by
k.kathirvel93
▴ 310
1
vote
3
replies
1.8k
views
Parsnp Error. Why?
SNP
software error
next-gen
snp
genome
5.6 years ago by
k.kathirvel93
▴ 310
0
votes
4
replies
1.5k
views
How can I extract SNP from bacterial genome?
snp
next-gen
sequencing
gene
genome
updated 5.7 years ago by
shubhra.bhattacharya
▴ 140 • written 5.7 years ago by
k.kathirvel93
▴ 310
2
votes
5
replies
1.5k
views
Suggestions needed for mIRNA-human target prediction ?
rna-seq
next-gen
gene
updated 5.8 years ago by
zhxq
• 0 • written 5.8 years ago by
k.kathirvel93
▴ 310
20
votes
11
replies
2.6k
views
miRNA-seq DE analysis with duplicate replicates. Am i correct?
R
next-gen
updated 5.8 years ago by
GiV17
▴ 50 • written 5.8 years ago by
k.kathirvel93
▴ 310
1
vote
6
replies
4.9k
views
How to extract unique values between columns in R ?
R
gene
updated 5.9 years ago by
jomo018
▴ 730 • written 5.9 years ago by
k.kathirvel93
▴ 310
4
votes
4
replies
5.9k
views
RNA-seq quantification Stringtie, featurecounts and HTSeq - am I correct?
RNA-Seq
rna-seq
gene
next-gen
genome
5.9 years ago by
k.kathirvel93
▴ 310
2
votes
6
replies
1.9k
views
How to run eXpress RNA-seq quantification?
RNA-Seq
rna-seq
gene
next-gen
5.9 years ago by
k.kathirvel93
▴ 310
7
votes
15
replies
4.0k
views
6 follow
Sort Sequences In A Fasta File According To The peg List
RNA-Seq
sequence
next-gen
updated 2.2 years ago by
Ram
44k • written 8.6 years ago by
k.kathirvel93
▴ 310
1
vote
5
replies
1.9k
views
HISAT2 alignment Error?
RNA-Seq
software error
rna-seq
Assembly
next-gen
6.0 years ago by
k.kathirvel93
▴ 310
2
votes
2
replies
2.2k
views
How could i use Quantile (or) TMM normalized counts as input for DESEQ2?
RNA-Seq
R
next-gen
rna-seq
updated 6.0 years ago by
WouterDeCoster
47k • written 6.0 years ago by
k.kathirvel93
▴ 310
3
votes
5
replies
3.1k
views
How can i get gene name instead of gene ID from prepDE.py after STRINGtie?
RNA-Seq
next-gen
gene
3.2 years ago by
k.kathirvel93
▴ 310
16
votes
9
replies
3.9k
views
6 follow
How can I perform Differential expression analysis with just one control and one cancer sample?
R
RNA-Seq
gene
6.1 years ago by
k.kathirvel93
▴ 310
1
vote
5
replies
1.7k
views
RNA-seq illumina paired-end data simulation with fold change differences
sequence
simulation
rna-seq
updated 6.1 years ago by
grant.hovhannisyan
★ 2.6k • written 6.3 years ago by
k.kathirvel93
▴ 310
2
votes
5
replies
2.2k
views
RNA-seq : Quantification problem after mapped with BBMap
RNA-Seq
next-gen
software error
updated 6.1 years ago by
michael.ante
★ 3.8k • written 6.1 years ago by
k.kathirvel93
▴ 310
16
votes
9
replies
12k
views
7 follow
How to convert transcript level TPM to gene level TPM ?
RNA-Seq
next-gen
gene
rna-seq
sequencing
updated 6.1 years ago by
vj
▴ 520 • written 6.1 years ago by
k.kathirvel93
▴ 310
3
votes
7
replies
2.3k
views
RNA-seq mapping Reference genome
RNA-Seq
next-gen
rna-seq
updated 6.1 years ago by
Devon Ryan
104k • written 6.1 years ago by
k.kathirvel93
▴ 310
0
votes
3
replies
1.4k
views
Need suggestions for RNA-seq quantification tools benchmarking.
RNA-Seq
rna-seq
next-gen
6.2 years ago by
k.kathirvel93
▴ 310
0
votes
0
replies
712
views
Fromwhere I can get MAQC RNA-seq datasets ?
RNA-Seq
sequence
rna-seq
next-gen
6.2 years ago by
k.kathirvel93
▴ 310
1
vote
8
replies
1.5k
views
Why Cufflinks is not Running?
RNA-Seq
next-gen
software error
updated 6.2 years ago by
Medhat
9.8k • written 6.2 years ago by
k.kathirvel93
▴ 310
0
votes
3
replies
1.5k
views
Polyester RNA-seq simulation
RNA-Seq
sequencing
next-gen
updated 6.2 years ago by
GenoMax
145k • written 6.2 years ago by
k.kathirvel93
▴ 310
6
votes
11
replies
7.1k
views
7 follow
fastq- dump error
RNA-Seq
software error
sequence
updated 6.2 years ago by
Michele Busby
★ 2.2k • written 6.2 years ago by
k.kathirvel93
▴ 310
2
votes
2
replies
1.5k
views
Best database for human mRNA expression information from different tissues?
RNA-Seq
gene
updated 6.3 years ago by
GouthamAtla
12k • written 6.3 years ago by
k.kathirvel93
▴ 310
0
votes
2
replies
3.3k
views
How to perform TMM normalization for my miRNA data
R
next-gen
sequencing
updated 6.6 years ago by
h.mon
35k • written 6.6 years ago by
k.kathirvel93
▴ 310
0
votes
1
reply
1.1k
views
How to get human miRNA length file?
R
next-gen
sequencing
sequence
software error
updated 6.6 years ago by
michael.ante
★ 3.8k • written 6.6 years ago by
k.kathirvel93
▴ 310
0
votes
2
replies
5.4k
views
How to install preprocessCore package in Rstudio?
R
rna-seq
sequence
updated 6.6 years ago by
shaban.hiba8
▴ 10 • written 6.6 years ago by
k.kathirvel93
▴ 310
2
votes
9
replies
2.6k
views
How to perform FPKM and TMM calculations?
RNA-Seq
next-gen
sequencing
sequence
gene
updated 6.6 years ago by
Sej Modha
5.3k • written 6.6 years ago by
k.kathirvel93
▴ 310
0
votes
1
reply
875
views
Error on HT-Seq-count while RNA quantification
RNA-Seq
software error
genome
rna-seq
next-gen
6.6 years ago by
k.kathirvel93
▴ 310
2
votes
2
replies
2.0k
views
How can I Annotate my miRNA data against MirBase?
RNA-Seq
Assembly
genome
sequence
next-gen
updated 7.1 years ago by
Biostar
20 • written 7.3 years ago by
k.kathirvel93
▴ 310
0
votes
9
replies
4.3k
views
FeatureCount for miRNA count
genome
next-gen
sequencing
sequence
software error
7.2 years ago by
k.kathirvel93
▴ 310
1
vote
1
reply
2.2k
views
How to annotate the Bacterial genome VCF ?
SNP
next-gen
sequencing
gene
genome
7.4 years ago by
k.kathirvel93
▴ 310
0
votes
1
reply
843
views
How to SignUp DNAStar ?
software error
genome
next-gen
updated 7.6 years ago by
Benn
8.3k • written 7.6 years ago by
k.kathirvel93
▴ 310
0
votes
1
reply
1.8k
views
How to extract the mismatched unique region from Mauve ?
Assembly
genome
next-gen
sequencing
sequence
updated 7.6 years ago by
Sej Modha
5.3k • written 7.6 years ago by
k.kathirvel93
▴ 310
0
votes
0
replies
921
views
Can't get any genomic islands in my genome on islandviewer
genome
next-gen
sequence
gene
sequencing
7.6 years ago by
k.kathirvel93
▴ 310
0
votes
0
replies
1.4k
views
Where I can Download the All CRISPR Associated Protein(Cas) sequences ?
genome
alignment
sequence
gene
7.7 years ago by
k.kathirvel93
▴ 310
0
votes
1
reply
1.9k
views
How to fill the gaps in the genome by using CLCgenomeworkbench?
Assembly
genome
next-gen
sequencing
sequence
updated 8.0 years ago by
lakhujanivijay
5.8k • written 8.0 years ago by
k.kathirvel93
▴ 310
8
votes
3
replies
7.5k
views
How to get contigs from scaffolds
Assembly
next-gen
sequencing
alignment
genome
updated 8.0 years ago by
lakhujanivijay
5.8k • written 8.0 years ago by
k.kathirvel93
▴ 310
59 results • Page
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