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Answer: Is it Possible to "Merge" data from Replicates within a VCF SNP File
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use bcftools merge with --force-samples and then use jvarkit https://jvarkit.readthedocs.io/en/latest/VcfFilterJdk/ to replace the no-call …
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Since all the reads that show the alternate allele have to be clipped to align there, I'd say those reads are misaligned. I would say that…
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> Here's a few lines from the head of the raw fastq
If your files are actually compressed (as their names suggest) then you should not be …
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If you added the `\` before the `+` then there is no need for it. It makes it appear that the sequences are not in proper fastq format. Ple…
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This seems to be the same unanswered question as before, except that its description is split over two threads. You are now forcing us to r…
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I'll probably go with "matches" even though it doesn't sound as good as just "hit"
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> is there a synonym for hits from BLAST?
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Is this ALL the context you can give us?
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Where did you copy-paste this from? It looks like an assignment question.
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Hi Phillip,
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Thank you so much for your hint! I'll look into this!
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curious
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unzip haps then:
bin/shapeit \
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