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121,990 results • Page
256 of 2440
Sort: Rank
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Votes
Replies
0
votes
1
reply
940
views
Co-Expression of All Genes with a Single Gene (Spatial Transcriptomics)
Transcriptomics
Correlation
Seurat
scRNA-seq
Spatial-Transcriptomics
updated 2.4 years ago by
jv
★ 1.9k • written 2.4 years ago by
ivingan
• 0
0
votes
2
replies
1.1k
views
how to change the format of file in R
R
updated 2.4 years ago by
zx8754
12k • written 2.4 years ago by
sata72
• 0
1
vote
3
replies
1.4k
views
rna seq design matrix
edgeR
deseq2
modelmatrix
dge
rna-seq
updated 2.4 years ago by
ATpoint
89k • written 2.4 years ago by
biology_inform
▴ 60
0
votes
1
reply
777
views
How to find complete overlaps between between multiple .bed files with bedtools
bedtools
granges
updated 2.4 years ago by
Pierre Lindenbaum
166k • written 2.4 years ago by
Alewa
▴ 190
1
vote
2
replies
1.6k
views
Help with understanding BBduk's behavior
BBduk
kmer
2.4 years ago by
Dave Carlson
★ 2.2k
1
vote
2
replies
775
views
Different read numbers for the same samples
salmon
RNA-Seq
deseq2
updated 2.4 years ago by
Ram
45k • written 2.4 years ago by
Luke
▴ 10
1
vote
8
replies
3.0k
views
Concatenating fastq for the same sample or doing it separately and merge at the BAM stage ?
RNA-seq
updated 2.4 years ago by
Ram
45k • written 2.4 years ago by
mohsamir2016
▴ 30
0
votes
1
reply
874
views
GATK4.3.0 VariantFiltration
GATK4.3.0
hard-filter
updated 2.4 years ago by
Pierre Lindenbaum
166k • written 2.4 years ago by
wonde2000
• 0
0
votes
4
replies
2.1k
views
Subset FASTA file using partial matching of headers with list of taxon names
FASTA
updated 2.4 years ago by
barslmn
★ 2.5k • written 2.4 years ago by
Ellen
▴ 20
0
votes
1
reply
785
views
tr2aacds error about class2pub
class2pub
tr2aacds
updated 2.4 years ago by
Cathia
• 0 • written 3.4 years ago by
380630938
• 0
0
votes
2
replies
1.4k
views
Don't see uploaded files for linking in EGA (European Genome Archive)
EGA
2.4 years ago by
optimistsso4co3
▴ 140
4
votes
4
replies
1.4k
views
Subset FASTA file for taxonomy (phylum name) in R
FASTA
R
2.4 years ago by
Ellen
▴ 20
8
votes
6
replies
23k
views
6 follow
Subsetting a fasta file using seqinr in R
sequence
R
fasta
updated 2.4 years ago by
GenoMax
154k • written 10.8 years ago by
henrikkjeldal
▴ 10
0
votes
0
replies
486
views
Tools for network enrichment analysis in bacteria
network-enrichment-analysis
2.4 years ago by
langziv
▴ 70
0
votes
0
replies
1.0k
views
News:
Course - Longitudinal data analysis in R
Longitudinal-Data
R
Genomics
updated 2.4 years ago by
Ram
45k • written 2.4 years ago by
Physalia-courses
★ 2.6k
1
vote
3
replies
2.9k
views
Need help in mapping color to levels in ComplexHeatmap
R
ComplexHeatmap
2.4 years ago by
rishav513
▴ 30
1
vote
2
replies
2.9k
views
Error in Adding 1000Genomes Ancestral Allele info: Using VCF tools fill-aa
vcftools
samtools
faidx
tabix
1000Genomes
updated 2.4 years ago by
barslmn
★ 2.5k • written 8.0 years ago by
shrutishreyajha
▴ 10
1
vote
1
reply
2.4k
views
Understanding learn_graph and ncenter in Monocle3
scRNA-seq
monocle3
seurat
trajectory
updated 2.4 years ago by
Kyle
▴ 10 • written 2.4 years ago by
kkbarratt19
▴ 10
1
vote
3
replies
1.4k
views
Variant calling analysis
vcf
variant-calling
wgs
updated 2.4 years ago by
Medhat
9.8k • written 2.4 years ago by
namck
• 0
0
votes
0
replies
643
views
Comparing gene expression with copy number variation in TCGA
BiomaRt
TCGABiolinks
2.4 years ago by
Will Yam
▴ 30
0
votes
4
replies
7.3k
views
6 follow
rsq Filter in Michigan imputation Server
rsq
michigan
updated 2.2 years ago by
yuanma0427
• 0 • written 6.1 years ago by
Shicheng Guo
★ 9.6k
18
votes
9
replies
5.3k
views
MAPQ filtering for clinical applications
MAPQ
clinical NGS
updated 2.4 years ago by
DKA
▴ 40 • written 8.1 years ago by
Kevin Blighe
89k
3
votes
7
replies
2.5k
views
How to show only highly clustered genes in a heatmap, and the rest will hide
R
ComplexHeatmap
2.4 years ago by
rishav513
▴ 30
0
votes
2
replies
1.7k
views
FoldX DDG calculation: how to allow for (limited) backbone movement?
Protein
FoldX
Stability
Gibbs
DDG
2.4 years ago by
darink
▴ 10
8
votes
5
replies
4.8k
views
how to design a guide RNA
genomics
updated 2.4 years ago by
rfran010
★ 1.7k • written 2.4 years ago by
Bioinfo
▴ 20
0
votes
2
replies
1.8k
views
How do I compare gene expression levels between clusters in single-cell RNA-seq dataset?
transcriptomics
single-cell
expression
Seurat
R
2.4 years ago by
Sergei C
• 0
0
votes
0
replies
1.2k
views
Generating variant read count matrix, total read count matrix and binary/ternary mutaion matrix for SNV from scDNAseq FASTQ files
SNV
mutationMatrix
tumorPhylogeny
scDNAseq
mutaion
22 months ago by
supernovamik
• 0
0
votes
1
reply
787
views
Trimmomatic run error
Trimmomatic
adap
updated 2.4 years ago by
Pierre Lindenbaum
166k • written 2.4 years ago by
eshrakaali_p
• 0
1
vote
5
replies
2.6k
views
kraken on nt library
kraken
nt
2.4 years ago by
Francois Piumi
▴ 70
3
votes
1
reply
966
views
chromosome location to gene name and aa change
variant-annotation
2.4 years ago by
Zi
▴ 20
2
votes
3
replies
1.6k
views
rna long read length distibution
long-read
updated 18 months ago by
Ram
45k • written 2.4 years ago by
shinyjj
▴ 60
0
votes
2
replies
2.2k
views
Add a genome to a kraken library
kraken
2.4 years ago by
Francois Piumi
▴ 70
0
votes
1
reply
1.2k
views
DESeq2 : parameter of Negative Binomial model in a context of gene expression
rnaseq
DESeq2
NB
2.4 years ago by
Picasa
▴ 690
1
vote
2
replies
1.6k
views
Public single cell rna-seq with only one fastq file. How can I handle it?
single-cell
scRNA-seq
2.4 years ago by
기석
• 0
0
votes
1
reply
867
views
Are there any recommended tools for tumor target sequencing data downstream analysis
target
tumor
downstream
compare
plots
2.4 years ago by
alwayshope
▴ 40
0
votes
0
replies
599
views
CRISPR-DAV
knockout
indel
CRISPR
detection
CRISPR-DAV
2.4 years ago by
Sowmya
• 0
0
votes
2
replies
1.3k
views
modelling time series data from different individuals
modeling
2.4 years ago by
Sara
▴ 280
0
votes
0
replies
655
views
Multiple plot are displayed on one plot by matplotlib
Rstudio
python
r
2.4 years ago by
ali.kian.saei
▴ 10
2
votes
2
replies
1.3k
views
What is the node_id in vg giraffe output (gaf or gam)?
giraffe
vg
2.3 years ago by
Hendricks27
▴ 20
3
votes
11
replies
3.4k
views
6 follow
BLAST command line scripting
BASH
updated 2.4 years ago by
Joe
22k • written 2.4 years ago by
Ali
▴ 10
0
votes
1
reply
1.1k
views
Reducing the size of raw sequencing data in fastq format by using a simplified quality score
fastq
compression
updated 2.4 years ago by
ATpoint
89k • written 2.4 years ago by
rls_08
▴ 40
1
vote
3
replies
1.5k
views
how to do an "reverse" oncoplot in maftools
maftools
Rstudio
updated 2.4 years ago by
Ram
45k • written 2.4 years ago by
JULIA HELENA
• 0
0
votes
0
replies
616
views
How to do diferential expression analysis of 2 closely related species
Trinity
EdgeR
Diferential-Expression
updated 2.4 years ago by
Ram
45k • written 2.4 years ago by
Fernando
• 0
1
vote
14
replies
3.5k
views
bbduk command line options for EM-seq (NEB)
bbduk
trim-galore
updated 2.4 years ago by
GenoMax
154k • written 2.4 years ago by
tamu.anand
▴ 30
0
votes
1
reply
918
views
Error in running Abyss assembler for chicken genome assembly
abyss
assembly
genome
fasta
updated 20 months ago by
sainavyav22
• 0 • written 2.4 years ago by
Maliha
▴ 30
0
votes
0
replies
973
views
Principal component analysis using plotPCA of deepTools
plotpca
deeptools
pca
2.4 years ago by
Rajendra KC
▴ 20
2
votes
1
reply
1.1k
views
How to improve signal to noise ratio in sequencing samples?
IGV
background-noise
MACS2
updated 2.4 years ago by
ATpoint
89k • written 2.4 years ago by
Maurice
• 0
1
vote
2
replies
1.4k
views
How to generate BED files with 3D coordinates?
3Dgenome
3D
HiC
washubrowser
2.4 years ago by
jetson
• 0
4
votes
6
replies
1.7k
views
How to pass from DNA to AA fasta
genetics
updated 2.4 years ago by
Buffo
★ 2.4k • written 2.4 years ago by
Anderson Stiward
• 0
0
votes
8
replies
2.0k
views
BAMboozle
BAMboozle
2.4 years ago by
mropri
▴ 170
121,990 results • Page
256 of 2440
Recent Votes
Answer: Nextflow MultiQC runs multiple times due to FASTQC zip name collisions
Answer: Nextflow MultiQC runs multiple times due to FASTQC zip name collisions
Answer: TMM-Normalization
Answer: Tools to simulate Illumina short read sequences and ONT long reads with a refere
Answer: Tools to simulate Illumina short read sequences and ONT long reads with a refere
Answer: Tools to simulate Illumina short read sequences and ONT long reads with a refere
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Comment: Nextflow MultiQC runs multiple times due to FASTQC zip name collisions
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Found the docs: https://www.nextflow.io/docs/latest/process.html#multiple-input-files | Arity | Name pattern | Staged file names | |---|--…
Comment: Dorado in PowerShell on Windows
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Last Call for this event. Apply now, if you like to join.
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hisat2_extract...py scripts make several assumptions about the input GTF files. For example, they require gene_id field to be present for a…
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