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122,014 results • Page 300 of 2441
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4
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4
replies
2.0k
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Do I need to adjust the pvalue if I am only going to test one gene from omics data containing many genes?
pvalue Omics RNAseq
2.7 years ago by cwwong13 ▴ 40
4
votes
9
replies
3.3k
views
PROKKA.gff file is not compatible with featureCounts
featureCounts RNA-seq
2.6 years ago by Pegasus ▴ 130
1
vote
1
reply
1.7k
views
singleR annotation shows overlapping clusters
single cluster cell annotation singleR Seurat
updated 2.7 years ago by ★ 19k • written 2.7 years ago by ▴ 110
4
votes
4
replies
2.4k
views
Metagenome binning of samples with individual assembly.
Binning Metagenomics
updated 2.7 years ago by ★ 30k • written 2.7 years ago by ▴ 10
0
votes
4
replies
1.6k
views
How to create Dockerfile without copying large data input and Build image such that snakemake wokflow run as Entrypoint
Dockerfile Snakemake
2.7 years ago by majeedmj.ict ▴ 20
4
votes
7
replies
10k
views
7 follow
Splicing factor database
Database Splicing
updated 2.7 years ago by • 0 • written 11.0 years ago by ▴ 260
2
votes
2
replies
879
views
does warning has an impact on the markduplication output file?
markduplication picard warning
updated 2.7 years ago by 166k • written 2.7 years ago by ▴ 20
0
votes
1
reply
908
views
Liftover from hg19 to hg38
RNAseq format bed analysis liftover
updated 2.7 years ago by 166k • written 2.7 years ago by • 0
2
votes
6
replies
2.8k
views
What is the difference between `view` and `annotate` in bcftools?
bcftools
updated 2.3 years ago by 45k • written 2.7 years ago by ▴ 70
3
votes
3
replies
1.4k
views
Downloading required resources for VQSR
VQSR WGS sequencing genome WES
updated 2.6 years ago by 45k • written 2.7 years ago by ▴ 60
0
votes
0
replies
682
views
News: Introduction to GWAS course in June
GWAS R
updated 2.6 years ago by 45k • written 2.7 years ago by ★ 2.7k
2
votes
4
replies
1.3k
views
Is genome a bottleneck in aligning sequences?
Slurm HPC WGS sequencing BWA
updated 2.7 years ago by 89k • written 2.7 years ago by • 0
0
votes
1
reply
750
views
missMethyl and Error About Missing Value
missMethyl R Markdown
updated 2.6 years ago by • 0 • written 2.7 years ago by ▴ 10
0
votes
0
replies
543
views
When Running GLIPH2 on bulk data, how do I format the V and J columns if there are multiple instances of either in the data?
immunology Technical
2.7 years ago by nickroseae ▴ 10
0
votes
0
replies
555
views
Trying to calculate methylated C/All C , all output counts are 0
bismark RNA-seq
updated 2.6 years ago by 45k • written 2.7 years ago by • 0
0
votes
2
replies
1.0k
views
Alignment in bioinformatics
Reads RNA Alignment HISAT2
2.7 years ago by Monia • 0
0
votes
3
replies
1.4k
views
how to calcul risk score with a prognostic genes
riskscore multivariate analysis prognostic model
updated 2.4 years ago by • 0 • written 3.0 years ago by ▴ 30
0
votes
5
replies
1.6k
views
How to download all KEGG IDs with their associated vocabulary?
KEGG_ID KEGG Chlamydomonas
2.7 years ago by Jimmy ▴ 30
2
votes
2
replies
951
views
Bioinformatics recursion practical applications
python
updated 2.6 years ago by 45k • written 2.7 years ago by ▴ 10
1
vote
0
replies
830
views
Tool: HaploCart: Human mtDNA Haplogroup Classification Using a Pangenomic Reference Graph
graph human pangenome haplogroup mitochondrion
2.7 years ago by Gabriel R. ★ 2.9k
1
vote
1
reply
665
views
Sequence content trimmer error
trimmer sequence
updated 2.4 years ago by 45k • written 2.7 years ago by • 0
0
votes
1
reply
2.2k
views
fastp json -> multiqc and fastp processed reads ->fastqc -> multiqc show different level of sequence duplication in my RNAseq data
fastp duplication sequence fastqc
updated 2.7 years ago by 154k • written 2.7 years ago by • 0
12
votes
5
replies
6.2k
views
How to use CAFE from Orthofinder Results
expansion orthofinder cafe gene
updated 6 weeks ago by ▴ 190 • written 2.7 years ago by ▴ 30
0
votes
0
replies
502
views
How can I identify genes that are mitochondrial in the UKBB genetic data, or are there any references for this?
UKBB
2.7 years ago by 屹 • 0
1
vote
2
replies
989
views
Shell script for assembling sets of pair-end reads using unicycler
unicycler script shell assemble
2.7 years ago by kyotorashi • 0
5
votes
2
replies
2.4k
views
How do I go from TPM to PCA (rna-seq)?
pca rnaseq tpm
updated 2.7 years ago by 89k • written 2.7 years ago by ▴ 110
0
votes
0
replies
578
views
is there anyway to make gbk file for desired genes only?
gbk NCBI
2.7 years ago by Neel ▴ 20
1
vote
1
reply
4.7k
views
KOBAS2.0 , problems
kobas transcriptome PATHs
updated 2.7 years ago by ▴ 10 • written 9.6 years ago by ▴ 20
2
votes
1
reply
1.2k
views
GATK gCNV contig ploidy priors table
NGS CNV GATK.gCNV Calling Variant
2.6 years ago by adarsh ▴ 60
0
votes
1
reply
792
views
How do I use tximport to annotate using ensemble annotation on GRCh37.75?
tximport ensemble annotation
updated 2.7 years ago by 89k • written 2.7 years ago by ▴ 110
0
votes
0
replies
574
views
More up-regulated genes annotate to known GO/KEGG than down-regulated genes
denovo edgeR limma trinotate trinity
2.7 years ago by bioinfo_cat ▴ 20
0
votes
2
replies
1.8k
views
MiXCR error with the complied cat TCR library
repseqio MiXCR
updated 2.7 years ago by ▴ 120 • written 4.1 years ago by • 0
0
votes
0
replies
589
views
Gene names/ids on annotated protein files
bash Protein GFF annotation
updated 2.7 years ago by 154k • written 2.7 years ago by ▴ 50
2
votes
1
reply
928
views
how to bring in the cells in a gate from openCyto into the CATALYST pipeline (flow cytometry)
CATALYST flow cytometry openCyto ggcyto
2.7 years ago by msn ▴ 130
0
votes
0
replies
503
views
lDDT for nucleic acids
RNA lDDT
updated 2.7 years ago by 154k • written 2.7 years ago by • 0
1
vote
4
replies
3.0k
views
Using salmon on HISAT2 BAM files for transcript quantification
salmon alignment HISAT2
updated 2.7 years ago by 89k • written 2.8 years ago by ▴ 10
9
votes
16
replies
4.4k
views
Can't liftover vcf file from hg19 to hg38
bcftools
updated 2.3 years ago by 45k • written 2.7 years ago by ▴ 20
0
votes
5
replies
1.6k
views
Samtools unmapped reads
samtools
2.7 years ago by DNAngel ▴ 260
0
votes
9
replies
1.9k
views
Sum the values based on the variant names and give the result in stats format
coding
updated 2.7 years ago by 45k • written 2.7 years ago by ▴ 20
51
votes
15
replies
74k
views
12 follow
Sequence Number Count In Fastq.Gz File
counts sequence fastq
updated 2.7 years ago by 45k • written 14.3 years ago by ★ 1.7k
0
votes
0
replies
623
views
ncRNA-mRNA interaction prediction
ncRNAs interspecies interaction
2.7 years ago by blz ▴ 40
0
votes
3
replies
1.3k
views
filterAndTrim : Error in add(bin) : record does not start with '@'
R filterAndTrim DADA2
updated 2.7 years ago by 154k • written 2.7 years ago by ▴ 20
3
votes
2
replies
1.7k
views
Unknown naming convention for genes
naming gene
2.7 years ago by kjs22 ▴ 20
1
vote
5
replies
1.6k
views
What's the absolute easiest way of visualizing stranded RNA-seq data on custom genomes?
gviz RNAseq stranded R
updated 2.7 years ago by 15k • written 2.7 years ago by ★ 1.9k
0
votes
4
replies
1.9k
views
Arlequin - SNP outlier analysis help
SNP Arlequin
2.7 years ago by Roland ▴ 20
0
votes
0
replies
895
views
Job: Principal Scientist, Applied Computational Research @ CITRE, Seville, Sapin
Principal-Scientist Applied-Computational-Research Drug-Discovery
updated 2.7 years ago by 45k • written 2.7 years ago by • 0
0
votes
0
replies
855
views
Job: Senior Scientist – Biomedical Knowledge Discovery and Data Mining @ CITRE (Seville, Spain)
Senior-Scientist
updated 2.7 years ago by 45k • written 2.7 years ago by • 0
0
votes
0
replies
771
views
Job: Senior Scientist, Applied Machine Learning @ CITRE (Seville, Spain)
Machine-Learning
updated 2.7 years ago by 45k • written 2.7 years ago by • 0
0
votes
3
replies
984
views
how to change >header in to new line??
fasta
updated 2.7 years ago by 45k • written 2.7 years ago by ▴ 20
1
vote
1
reply
856
views
Replace header of fasta file according to another file
fasta
updated 2.7 years ago by 45k • written 2.7 years ago by ▴ 20
122,014 results • Page 300 of 2441
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Answer: 1 vs 1 DEG analysis in scrna seq data by ATpoint 89k
The only option you have is to treat every single cell as a replicate. That has the obvious downside that any effect can be a donor-unique …
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An open-source option: [kana](https://www.kanaverse.org/kana/).
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Yes, we plan to make English the primary language of the Brave UI.
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If your bacterial species is a (human) pathogen, you might want to check outbreak analysis papers of that species. In general, you find t…
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ok, missed that ... in any case that should not happen indeed. How did you determine that the files are not equal? I can indeed also see t…
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Do you have a plan to make an English version of the UI?
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This can visualize the parameters of the generated workflow, software, and scripts, and manage the docker process of the script, software, …
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This reminds me strongly on my "masters" courses (doesn't deserve that name tbf). "Here is some poorly-described project with little to no …
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I just wrote that I misunderstood your initial question.
Comment: DESeq2 on metagenome KO counts by Aleksandra ▴ 190
What exactly did I not get?
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If I understand correctly, you see increased signal at TSS sites compared to control (taller peaks in browser). However, 92% of the 450 siS…
Comment: combine VCF from diploid reference/haplotypes for the same sample by cmdcolin ★ 4.3k
this question is a little similar to your previous question (https://www.biostars.org/p/9614638/). just as added info, here is a tool calle…
Comment: hisat2 error-Paired end reads not equal or lack of RAM/disk space? by aj123 ▴ 130
As mentioned above, I just got the raw fastq files from the ftp site listed.
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