Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : all time
all time
today
this week
this month
this year
121,831 results • Page
417 of 2437
Sort: Rank
Rank
Views
Votes
Replies
4
votes
5
replies
5.4k
views
Pandas issue: To write multiple csv in loop
Pandas
Python
R
3.2 years ago by
Nai
▴ 50
0
votes
0
replies
714
views
exomedepth R package in ubuntu 22
exomedepth
22
CNV
depth
exome
ubuntu
3.2 years ago by
akoussounadis
▴ 10
0
votes
0
replies
891
views
Error on rsem-calculate-expression
RSEM
3.2 years ago by
billyconan6a
• 0
3
votes
3
replies
1.1k
views
Help with the reads filtering process
filtering
trim
3.2 years ago by
valentinavan
▴ 50
0
votes
2
replies
607
views
Pooling single-cell controls
pooling
single-cell
scRNA-Seq
3.2 years ago by
OakLeaf
• 0
14
votes
10
replies
11k
views
fgsea after deseq2, criteria for ranking DEGs.
GSEA
updated 3.2 years ago by
ATpoint
89k • written 3.2 years ago by
user230613
▴ 380
0
votes
1
reply
679
views
Same rs ID mapping to different genes
GeneID
SNPID
updated 3.2 years ago by
ATpoint
89k • written 3.2 years ago by
elielsonveloso
• 0
0
votes
1
reply
757
views
Sorting Gene Expression Omnibus GSE file by phenoData
GEO
GSE
R
GEOquery
updated 3.2 years ago by
Basti
★ 2.1k • written 3.2 years ago by
aok1234
• 0
1
vote
3
replies
4.6k
views
Go Tree Trimming
gene-ontology
trimming
written 11.5 years ago by
ewre
▴ 260
0
votes
1
reply
608
views
Compare two columns from two files and print the content of both the files
bash
updated 2.5 years ago by
Ram
45k • written 3.2 years ago by
Utkarsha
• 0
1
vote
2
replies
2.1k
views
Removing duplicate seq_ids in database
seqkit
duplicate
seq_ids
makeblastdb
3.2 years ago by
K
• 0
0
votes
2
replies
867
views
Beedtools intersect unable to open a vcf file
VCF
Bedtools
updated 2.2 years ago by
Ram
45k • written 3.2 years ago by
ManuelDB
▴ 110
1
vote
1
reply
736
views
Interpreting Two-sided Fishers For Directional Regulation of Genes
expression
gene
differential
test
fishers
exact
RNA-seq
regulation
updated 3.2 years ago by
Asaf
10k • written 3.2 years ago by
Anthony
• 0
0
votes
1
reply
1.1k
views
gProfiler: Customising the gostplot
gProfiler
updated 3.2 years ago by
antonioggsousa
3.4k • written 3.2 years ago by
anand.gururajan
• 0
0
votes
1
reply
618
views
How to address "*" as RNAME in SAM file
bam
alignment
sam
fasta
sequence
updated 3.2 years ago by
Pierre Lindenbaum
166k • written 3.2 years ago by
Matej
• 0
1
vote
2
replies
933
views
Mouse SNPs to genes
genes
snp
mouse
3.2 years ago by
sonpat
• 0
3
votes
8
replies
7.6k
views
cutadapt summary statistics after every run
RNA-Seq
adapter trimming
cutadapt
updated 3.2 years ago by
morteza.mahmoudisaber
▴ 80 • written 5.7 years ago by
bnayer26
• 0
1
vote
2
replies
1.3k
views
Crossing Wires with GTF files
featureCounts
STAR
GTF
updated 3.2 years ago by
i.sudbery
22k • written 3.2 years ago by
joseph.landry
▴ 50
20
votes
5
replies
2.9k
views
ncbi-genome-download - bacterial and viral genomes ?
protein
gene
genome
updated 3.2 years ago by
pinn
▴ 210 • written 3.2 years ago by
sunnykevin97
▴ 1000
0
votes
2
replies
1.0k
views
DMD gene/genome/exome sequencing data publicly avalaible
Duchenne
sequencing
DMD
3.2 years ago by
l.willianpacheco
▴ 10
3
votes
4
replies
1.1k
views
Struggling with some data visualization in R
ggplot2
visualization
R
updated 3.2 years ago by
seidel
11k • written 3.2 years ago by
v.berriosfarias
▴ 140
0
votes
0
replies
957
views
Job:
Bioinformatics Position at UPenn
single
transcriptome
R
cell
multiomics
3.2 years ago by
LabCoatNomad
▴ 10
0
votes
4
replies
3.7k
views
ERROR: "Fragment file is not indexed"
atac-seq
cellranger
snatac-seq
3.2 years ago by
bioinformatics.girl
▴ 30
3
votes
3
replies
2.5k
views
Confused about bin completion and contamination
metagenomics
bins
metagenome
updated 3.2 years ago by
Mensur Dlakic
★ 29k • written 3.2 years ago by
arshad1292
▴ 110
4
votes
8
replies
2.3k
views
Trinity genome-guided
Trinity
Rna-seq
genome-guided
updated 3.2 years ago by
Ram
45k • written 3.2 years ago by
al_capone13
• 0
1
vote
5
replies
1.7k
views
Help with Bam Sort
Samtools
updated 2.2 years ago by
Ram
45k • written 3.2 years ago by
joseph.landry
▴ 50
10
votes
6
replies
2.9k
views
Download SNP Annotation
SNP
dbSNP
GWAS
NCBI
3.2 years ago by
fernandogs97
▴ 30
0
votes
0
replies
432
views
peertool to generate covariates file give an error
SNP
covariates
peertool
gene
3.2 years ago by
rheab1230
▴ 150
0
votes
0
replies
1.4k
views
Job:
PhD studentship
hiring
phd
3.2 years ago by
arman.eshaghi
• 0
3
votes
5
replies
2.5k
views
qualimap - bed file error - BED format error, there should be at least 6 fields.
qualimap
updated 3.2 years ago by
Alex Reynolds
36k • written 3.2 years ago by
amy__
▴ 250
6
votes
2
replies
5.3k
views
How to adjust font size of row_split labels in ComplexHeatmap R package
Heatmap
ComplexHeatmap
R
labels
updated 3.2 years ago by
cpad0112
21k • written 3.2 years ago by
mohammedtoufiq91
▴ 270
0
votes
1
reply
1.2k
views
WGCNA outliers
wgcna
rnaseq
updated 3.2 years ago by
ATpoint
89k • written 3.2 years ago by
biology_inform
▴ 60
2
votes
2
replies
1.9k
views
Diffbind with <3 reps?
diffbind
rstudio
atac
galaxy
3.2 years ago by
a_bis
▴ 40
0
votes
2
replies
852
views
Evaluation of gene expression by the "2–∆∆Ct" method.
Fold
3.2 years ago by
eugene
• 0
3
votes
4
replies
1.7k
views
Problem installing R package with Bioconductor dependencies
Bioconductor
R
package
3.2 years ago by
DanK
▴ 10
0
votes
1
reply
860
views
Data Description of Output of .glm.linear file
plink
glm
plink2
linear
updated 3.2 years ago by
4galaxy77
2.9k • written 3.2 years ago by
Raju
• 0
7
votes
6
replies
1.7k
views
Removing bacterial sequences from assembled eukaryotic draft genomes ?
protein
genome
gene
updated 3.2 years ago by
Mensur Dlakic
★ 29k • written 3.2 years ago by
sunnykevin97
▴ 1000
0
votes
0
replies
804
views
How to convert TreeMix newick output graph to dot format?
treemix
GRoSS
admixtools
Newick
dot
3.2 years ago by
eyb
▴ 270
2
votes
10
replies
2.2k
views
Running salmon in alignment mode?
transcriptomics
salmon
metatranscriptomics
rna
rna-seq
3.2 years ago by
pearl2070
▴ 10
4
votes
2
replies
1.4k
views
Error when using edgeR with only two samples
RNA-seq
DGE
sequencing
edgeR
3.2 years ago by
Apex92
▴ 320
0
votes
2
replies
797
views
Splitting human bam file into fixed regions
Bam
updated 3.2 years ago by
Istvan Albert
103k • written 3.2 years ago by
irfanwustl
▴ 90
2
votes
1
reply
1.1k
views
What's the point about single-cell sequencing?
sequencing
updated 3.2 years ago by
rpolicastro
13k • written 3.2 years ago by
Hashirama
▴ 20
1
vote
4
replies
3.8k
views
How can I find DEGs between groups in one cluster of scRNA-Seq Seurat object?
Seurat
scRNA-Seq
3.2 years ago by
Zahra
▴ 110
0
votes
4
replies
1.7k
views
Could not find function "CreateChromatinAssay"
atac-seq
10x
cellranger
snatac-seq
updated 3.2 years ago by
cpad0112
21k • written 3.2 years ago by
bioinformatics.girl
▴ 30
0
votes
0
replies
589
views
News:
Online statistics courses
R
statistics
3.2 years ago by
Physalia-courses
★ 2.6k
3
votes
7
replies
2.2k
views
Find barcodes in fasta file
fasta
biopython
3.2 years ago by
pablo
▴ 350
2
votes
2
replies
1.3k
views
qPCR result for Technical replicates
assay
PCR
qPCR
updated 3.2 years ago by
Mensur Dlakic
★ 29k • written 3.3 years ago by
Maria17
▴ 40
1
vote
3
replies
1.2k
views
Colab
colab-reg
gpu
3.2 years ago by
bala
• 0
2
votes
9
replies
2.9k
views
Using kraken2 to fish out only 16S reads
microbiome
metagenomics
16S
Deep-sequencing
updated 3.2 years ago by
Mensur Dlakic
★ 29k • written 3.2 years ago by
Rezenman
• 0
4
votes
6
replies
2.4k
views
Low mapping rate due to rRNA
RNA-seq
rRNA
STAR
updated 3.2 years ago by
Trivas
★ 1.9k • written 3.3 years ago by
garcesj
▴ 50
121,831 results • Page
417 of 2437
Recent Votes
Answer: Split chromosome into smaller fragments to save memory when build xg and gcsa in
C: DiffBind error when calling dba.count
Answer: CBioPortal: What does Mutation type: Targeted_Region means?
Answer: CBioPortal: What does Mutation type: Targeted_Region means?
Comment: how to start
Comment: how to start
Answer: how to start
Recent Locations •
All
UCLA,
1 minute ago
USA,
1 minute ago
India,
40 minutes ago
United Kingdom,
1 hour ago
London, UK,
2 hours ago
United States,
2 hours ago
United States,
2 hours ago
Recent Awards •
All
Popular Question
to
dce1ee77
• 0
Popular Question
to
Jeremy
▴ 930
Popular Question
to
Pratik
★ 1.1k
Commentator
to
ATpoint
89k
Popular Question
to
firestar
★ 1.7k
Popular Question
to
AMARU
• 0
Supporter
to
Aleksandra
▴ 130
Recent Replies
Comment: Split chromosome into smaller fragments to save memory when build xg and gcsa in
by
李经纬
• 0
Thank you. Even if I build the XG index after some modifications, the building of gcsa failed even on a single chromosome. Even though I h…
Comment: Parabricks : Number of GPUs requested (2) is more than number of GPUs (0) in the
by
Mensur Dlakic
★ 29k
For posterity, here is `nvidia-smi` output for our cluster: ``` +-------------------------------------------------------------------------…
Answer: Parabricks : Number of GPUs requested (2) is more than number of GPUs (0) in the
by
Mensur Dlakic
★ 29k
How often do we get a chance to help @yokofakun after all the help Pierre has provided? I feel like we have to make a serious effort here. …
Comment: DiffBind error when calling dba.count
by
Irene
• 0
I am having the same issue with the same situation, so i do not understand what could be the problem...i do not know if you finally figure …
Comment: Parabricks : Number of GPUs requested (2) is more than number of GPUs (0) in the
by
Pierre Lindenbaum
166k
@genomax I'm using the 'GPU' queue of my cluster (SLURM). The very same config was used with another parabrick subtool and I got not probl…
Comment: Parabricks : Number of GPUs requested (2) is more than number of GPUs (0) in the
by
GenoMax
153k
Are you running this under a job scheduler? Is there a separate partition for the GPU's/are they accessible to the scheduler?
Comment: Learning Bioinformatics doing Projects
by
Anjali
• 0
thank you.
Comment: Statistical test of difference between two conditions and account for the batch
by
ATpoint
89k
Are the batches biological replicates?
Comment: how to start
by
shelkmike
★ 1.7k
If you want to save time at the cost of having a lesser understanding of how bioinformatic programs work, you may study through the BioStar…
Answer: how to start
by
shelkmike
★ 1.7k
I would recommend, in the following order:<br> 1) Go through Bioinformatics Algorithms, either as a video course or as a book, and do all e…
Comment: Perform Hierarchical Clustering in R with ggdendro Visualization
by
Bastien Hervé
6.4k
For what is worth, in a previous project, I have done some tests on different hierarchical clustering methods for single cell RNAseq. I had…
Answer: how to start
by
yura.grabovska
▴ 820
* Get some data - either your own or from a paper / GEO / ArrayExpress / SRA / TCGA / cBioPortal etc etc. * Look at the methods of papers…
Comment: Perform Hierarchical Clustering in R with ggdendro Visualization
by
ATpoint
89k
"ward.D2" -- top of the pops in terms of interpretatble clusters from gene expression data in my hands, the rest is...often crytpic.
Comment: High percentage of intronic/intergenic reads in RNA-seq
by
i.sudbery
22k
I'd expect to see more or less what they see in your reference. Somewhere between half and two thirds of reads mapping to exons. The low fr…
Comment: Perform Hierarchical Clustering in R with ggdendro Visualization
by
Bastien Hervé
6.4k
As the whole presentation relies on a distance matrix and elements aggregation by hierarchical clustering, it would be helpful to better un…
Traffic: 2548 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6