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122,021 results • Page
591 of 2441
Sort: Rank
Rank
Views
Votes
Replies
0
votes
3
replies
1.6k
views
Handle inflated log2FC while using interaction term in DESeq2
RNAseq
DESeq2
R
4.1 years ago by
Shred
★ 1.6k
2
votes
6
replies
2.1k
views
Assembly with repetitive regions
Flye
Assembly
Canu
SPAdes
4.1 years ago by
msrch
• 0
3
votes
4
replies
4.2k
views
How to align and visualize data with .fasta and .gff3 files in IGV?
Visualization
fasta
gff3
Alignment
IGV
4.1 years ago by
Phuc
• 0
4
votes
2
replies
1.4k
views
scRNA-seq data analysis - R
scRNA-seq
R
updated 4.1 years ago by
ATpoint
89k • written 4.1 years ago by
ja4123
▴ 30
1
vote
1
reply
2.3k
views
VEP plugin uses
gene
Ensembl
next-gen-sequencing
VEP
updated 3.3 years ago by
Ram
45k • written 4.1 years ago by
SUMIT
▴ 30
3
votes
5
replies
9.4k
views
6 follow
Dnasp Tutorial For Beginner
updated 4.1 years ago by
cpad0112
21k • written 13.9 years ago by
Tondani
▴ 10
0
votes
3
replies
2.1k
views
I want to change the color of text by file type in PuTTY
PuTTY
updated 4.1 years ago by
GenoMax
154k • written 4.1 years ago by
rhksgudbc
• 0
1
vote
1
reply
1.3k
views
Forum:
What are some of the problems faced by bioinformaticians because the wet lab personell couldn't understand how data analysis was done?
Problems
Bioinformaticians
wetlab
NGS
updated 4.1 years ago by
ponganta
▴ 590 • written 4.1 years ago by
b5c4cf62
▴ 10
5
votes
14
replies
4.4k
views
Bowtie2 hg19 reference for gatk MuTect
gatk
bowtie2
updated 4.1 years ago by
aldhairmedico
▴ 70 • written 6.3 years ago by
varsha619
▴ 90
1
vote
9
replies
2.8k
views
Dante vs Nebula indexcov
dante
nebula
indexcov
4.1 years ago by
McKenna
• 0
2
votes
9
replies
2.8k
views
How get Genetic Positions of SNPs?
snps
genotype
distance
genetic
position
updated 4.1 years ago by
Sam
★ 4.8k • written 4.1 years ago by
Nemo
• 0
3
votes
4
replies
1.8k
views
Pipeline version control system, pipeline storage
pipeline
git
storage
updated 4.1 years ago by
i.sudbery
22k • written 4.1 years ago by
Anastasiya M
• 0
1
vote
4
replies
3.0k
views
Problems with downloading fastq files from sra-toolkit
sra-toolkit
10X-Genomics
NCBI
single-cell
updated 4.1 years ago by
sasa
▴ 10 • written 4.1 years ago by
pratarora
• 0
4
votes
7
replies
3.8k
views
Vcf file sorting
Vcf
4.1 years ago by
Lukas
• 0
2
votes
6
replies
2.7k
views
Rshiny - ggplot - density plot
histogram
Rshiny
ggplot
R
4.1 years ago by
vinishavvenugopal
▴ 30
1
vote
4
replies
1.5k
views
Sum of rows for GSEA analysis
GSEA
leading-edge
R
fGSEA
4.1 years ago by
rodolfo.peacewalker
▴ 390
0
votes
0
replies
627
views
Positional restraint energy is too big
Molecular
Dynamic
simulation
Amber
Equilibration
4.1 years ago by
Ammar Danazumi
▴ 10
0
votes
0
replies
727
views
miRNAseq analysis not shown adapter sequence and huge N's content
nextflex
mirnaseq
adapter
human
kit
4.1 years ago by
andreiareis1987
▴ 40
0
votes
0
replies
955
views
WNN (Seurat v4) vs. totalVI (scvi-tools) for CITE-seq data
10X
single-cell
seurat
scRNAseq
RNAseq
4.1 years ago by
MutationalMeltdown
▴ 200
0
votes
0
replies
900
views
R vegdist does not compute distances for all my sites
vegan
vegdist
R
updated 4.1 years ago by
Ram
45k • written 4.1 years ago by
DNAngel
▴ 260
2
votes
1
reply
1.5k
views
Filter duplicate ID from PLINK file
PLINK
array
SNP
GWAS
updated 4.1 years ago by
chrchang523
11k • written 4.1 years ago by
Sumeet
▴ 10
1
vote
1
reply
1.1k
views
Effect of unequal sample sizes on p-value
statistics
conceptual
updated 4.1 years ago by
German.M.Demidov
★ 3.0k • written 4.1 years ago by
c_u
▴ 530
2
votes
3
replies
2.9k
views
How to compute module completion ratio of KEGG modules from KO identifiers? (command line)
database
updated 4.1 years ago by
Tom
▴ 540 • written 5.5 years ago by
O.rka
▴ 750
0
votes
0
replies
511
views
Compare two gene lists that are generated by two methods
hypergeometric-test
updated 4.1 years ago by
Ram
45k • written 4.1 years ago by
wyj.jackson
▴ 20
0
votes
2
replies
921
views
Gene Expression Threshold
populus-trichocarpa
heatmap
expression
4.1 years ago by
true.tushar
• 0
0
votes
3
replies
1.7k
views
Get gene sequence for oragnism using python
Biopython
python
updated 2.6 years ago by
Ram
45k • written 4.1 years ago by
Ahmed
• 0
1
vote
2
replies
1.2k
views
relationship between DE-genes and DE-trascripts in deseq2
prepde
gene
matrix
transcript
updated 4.1 years ago by
swbarnes2
15k • written 4.1 years ago by
eyonesi
▴ 60
1
vote
3
replies
2.0k
views
Remove whitespaces on fasta files, except on fasta-header
sequence
updated 4.1 years ago by
cpad0112
21k • written 4.1 years ago by
genomes_and_MGEs
▴ 10
0
votes
0
replies
817
views
Tool:
A framework to prioritize miRNA-driven post-transcriptional signals using exonic and intronic regions of RNAseq data
post-transcriptional
miRNA
intron
exon
RNAseq
4.1 years ago by
Emilio Marmol
▴ 180
1
vote
11
replies
3.7k
views
Snakemake-Aligment using BWA-MEM2
memory-issue
Snakemake
updated 4.1 years ago by
Hyper_Odin
▴ 320 • written 4.1 years ago by
priya.bmg
▴ 70
2
votes
5
replies
2.0k
views
should barcode in scRNAseq be deleted when demultiplexing
demultiplexing
scRNAseq
4.1 years ago by
Binghong
▴ 20
4
votes
4
replies
1.6k
views
Any program to check resources used by Bioinfo Tools
bash
4.1 years ago by
NikhilP
▴ 20
0
votes
0
replies
770
views
Consolidate gVCF calling
vcf
gatk
gvcf
genotyping
consolidate
4.1 years ago by
anna
▴ 20
2
votes
20
replies
5.3k
views
liftover using genome browser
vcf
liftover
bed
4.1 years ago by
priyanka
▴ 20
0
votes
0
replies
772
views
regarding coexpression analysis (by pearson method) of genes shortlisted from expression profile of a dataset obtained from GDAC Firehouse database
Coexpression
pearson
updated 2.9 years ago by
Ram
45k • written 4.1 years ago by
jyotsnap
• 0
6
votes
6
replies
2.6k
views
Color label of rainfall plot drawn by KaryoploteR
plot
KaryoploteR
Rainfall
R
updated 4.1 years ago by
Philipp Bayer
8.9k • written 4.1 years ago by
FL512
▴ 20
0
votes
1
reply
964
views
Dataset of different timepoints of a cancers progression in the same patient?
cancer
RNAseq
updated 4.1 years ago by
Thind amarinder
▴ 340 • written 4.1 years ago by
jmgoldstein7
• 0
0
votes
2
replies
1.3k
views
removing adaptor
fastqc
updated 4.1 years ago by
GenoMax
154k • written 4.1 years ago by
prabin.dm
▴ 260
0
votes
0
replies
644
views
Find the copy number of marker genes and the number of them that results in drug resistance?
copy-number
23SrRNA
marker-gene
drug-Resistance
4.1 years ago by
eli_bayat
▴ 100
0
votes
0
replies
866
views
Strategies to learn about a gene of interest from single-cell RNA-seq data
scRNA-seq
RNA-seq
single-cell
4.1 years ago by
randalljellis
▴ 100
0
votes
0
replies
947
views
Job:
Computational Graduate Student
Computer
Chemistry
Physics
Science
4.1 years ago by
BerkeleyLab
▴ 70
0
votes
1
reply
1.8k
views
Job:
Computational Project Scientist
Molecular
Biophys
Integ
Bio
updated 4.1 years ago by
Ram
45k • written 4.1 years ago by
BerkeleyLab
▴ 70
0
votes
0
replies
988
views
Job:
Computational Postdoctoral Scholar
Molecular
Biophys
Integ
Bio
4.1 years ago by
BerkeleyLab
▴ 70
1
vote
1
reply
1.9k
views
Get chromosome names of a bigwig file
bigwig
updated 4.1 years ago by
Ram
45k • written 4.1 years ago by
grey
▴ 40
4
votes
2
replies
1.5k
views
Is it a good idea to plot a volcano plot starting at position x =1
plot
volcano
r
stat
updated 4.1 years ago by
Mensur Dlakic
★ 30k • written 4.1 years ago by
flalom
• 0
0
votes
3
replies
1.7k
views
Adapter trimming with trimmomatic
trimmomatic
RNAseq
updated 4.1 years ago by
GenoMax
154k • written 4.1 years ago by
Mozart
▴ 330
0
votes
1
reply
1.0k
views
htseq-count returns : does not contain a 'gene' attribute
htseq-count
RNA-Seq
4.1 years ago by
ziziqolo
▴ 10
0
votes
2
replies
2.1k
views
Seeking simple HiC mapping and visualization tutorial for small genome
HiC
updated 2.6 years ago by
Ram
45k • written 4.1 years ago by
rsharris
▴ 30
0
votes
0
replies
459
views
scRNAseq, how many genes are unique to each type vs combinatorially expressed?
RNA
scRNAseq
sequencing
single-cell
4.1 years ago by
I-Hao
• 0
3
votes
3
replies
1.3k
views
DEGs with uninsteresed sample files
design
bulkRNAseq
DEG
matrix
updated 4.1 years ago by
swbarnes2
15k • written 4.1 years ago by
jkim
▴ 220
122,021 results • Page
591 of 2441
Recent Votes
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Answer: HIV NL4-3 transcriptome fasta
ORFanage: by-reference protein annotation and comparison for transcriptome assembly
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fra.r.silvestro
▴ 10
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Physalia-courses
★ 2.7k
Scholar
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Istvan Albert
103k
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bioinfo_enthusiast
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tujuchuanli
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CECEL
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Answer: What is the length of the longest ORF appearing in reading frame 2 of any of the
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I suppose that this is a good resolution: frame = 2 protein_seq_frame2 = sequence[frame -1:] protein_seq_frame3 = protein…
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This could be caused by the line endings that differ between macOS and Windows. Generally a utility like `dos2unix` can help fix this. You …
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Generally speaking, we are not here to provide code review service and/or fix code for what appears to be a school assignment. If you have …
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We don't have 6 minutes to watch something without even knowing what it does. I would recommend that you provide a brief explanation of wh…
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Thanks for the reply, I simply recorded the screen and used brave to integrate fastqc analysis. You can click the link below to view. In ge…
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The purpose of normalization is to ensure that identical variants are represented identically. When not normalized, the same variants may …
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Yes, their would potentially be data leakage if you perform the DE before dividing your datasets into folds. Its unclear how much of a prob…
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How have these gene lists been obtained?
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> I used the first read sequence from ERR322446.filtered.A.fq as the seed `ERR322446` appears to be a human sample. Did you convert the …
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> Each individual Snippy run completes successfully and reports multiple variants When you run `snippy-core` there is no reference provid…
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Hi Rob, sorry for the late question. I was wondering though, if I can also quantify transposable elements using oarfish? Should I increas…
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The only option you have is to treat every single cell as a replicate. That has the obvious downside that any effect can be a donor-unique …
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An open-source option: [kana](https://www.kanaverse.org/kana/).
Comment: Brave: Bioinformatics Reactive Analysis and Visualization Engine
by
Edward
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Yes, we plan to make English the primary language of the Brave UI.
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