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122,013 results • Page
595 of 2441
Sort: Rank
Rank
Views
Votes
Replies
0
votes
0
replies
1.3k
views
Error in ReadAffy function
ReadAffy
Microarray
R
4.2 years ago by
Sib
▴ 80
1
vote
6
replies
1.8k
views
from genome position to protein position
protein
snp
genome
bacteria
position
4.2 years ago by
vujex
▴ 10
2
votes
4
replies
1.9k
views
Finding differentially expressed lncRNA
Feelnc
lncRNA
4.1 years ago by
bart
▴ 50
2
votes
1
reply
943
views
Base Recalibration -Second recalibration table
base
GATK
NGS
recalibration
updated 2.9 years ago by
alexcouzens
• 0 • written 4.2 years ago by
priya.bmg
▴ 70
3
votes
4
replies
1.9k
views
Convert a VCF-file in a user specific Format
VCF
4.2 years ago by
dominik.lagler
▴ 30
5
votes
9
replies
4.0k
views
gender determination and chrX CN calls
cnvkit
sequencing
next-gen
cnv
updated 4.1 years ago by
enes
▴ 40 • written 4.6 years ago by
erikt
▴ 30
0
votes
0
replies
594
views
Isaac aligner with unmapped reads in BAM file
BAM
updated 2.6 years ago by
Ram
45k • written 4.2 years ago by
OMG_HG
• 0
0
votes
0
replies
888
views
How to Combine Genotype and Phenotype Data?
ML
PLINK
SNPs
Phenotype
updated 4.2 years ago by
Ram
45k • written 4.2 years ago by
ErickW
• 0
1
vote
0
replies
1.2k
views
genomic inflation factor (lambda)=1
GWAS
stratification
inflation
factor
population
genomic
4.2 years ago by
putty
▴ 40
1
vote
1
reply
1.8k
views
getting paired end datasets from SRA
NCBI
SRA
updated 4.2 years ago by
Kevin Blighe
89k • written 4.2 years ago by
from the mountains
▴ 250
3
votes
1
reply
3.5k
views
Basic logic and use of PERMANOVA for microbiome data
microbiome
statistical test
updated 4.2 years ago by
matteolifilipe
▴ 20 • written 4.8 years ago by
xgeneral57
▴ 10
6
votes
2
replies
2.1k
views
Tutorial:
GSE28955 - Agilent-016436 Human miRNA Microarray 1.0
limma
GPL6955
Microarray
miRNA
Agilent
4.2 years ago by
Kevin Blighe
89k
0
votes
1
reply
1.4k
views
How to extract ancestral sequence for Cow from 46 eutherian mammals EPO Ensembl?
Ensembl
sequences
EPO
Ancestral
updated 4.2 years ago by
minesrebollo
• 0 • written 4.5 years ago by
Claire
• 0
0
votes
1
reply
1.4k
views
how to split paired-end fastq by barcode from smart-seq2
smart-seq2
demultiplexing
barcode
updated 4.2 years ago by
Divon
▴ 240 • written 4.2 years ago by
17318598206
▴ 30
0
votes
2
replies
3.0k
views
MiRBase miRNA analysis with STAR
miRNA
GRCm39
MiRBase
STAR
4.2 years ago by
Nitish Mishra
▴ 30
0
votes
1
reply
1.1k
views
Remove non variable sites from sequence alignment
MSA
alignment
nexus
FASTA
sequence
updated 4.2 years ago by
Mensur Dlakic
★ 30k • written 4.2 years ago by
mglasena
▴ 40
3
votes
6
replies
2.1k
views
Creating biplot PCA from metadata
biplot
ggplot2
4.2 years ago by
Roland
• 0
0
votes
0
replies
787
views
Error creating DESeq2 Data Set from HTSeq-Count
htseq-count
import
deseq2
dataset
4.2 years ago by
williamtmills
▴ 20
1
vote
8
replies
2.4k
views
How to create a label variable from a binary matrix with multiple columns
dataframe
R
updated 4.2 years ago by
Ram
45k • written 4.2 years ago by
biogamer.31
• 0
1
vote
2
replies
2.8k
views
How to fix GTF files by adding specific strings into empty gene_id ""
cellranger
GTF
Annotation
UNIX
4.1 years ago by
sasa
▴ 10
0
votes
0
replies
777
views
SmartSeq vs SmartSeq2
scRNA-Seq
4.2 years ago by
Badran
▴ 80
1
vote
3
replies
1.3k
views
Difference in VCF versions
VCF
updated 4.2 years ago by
Ram
45k • written 4.2 years ago by
Varun
• 0
1
vote
2
replies
1.3k
views
Making sense of genotype calculation equations
modeling
concordance
conpair
4.2 years ago by
from the mountains
▴ 250
19
votes
8
replies
5.0k
views
7 follow
Forum:
Where should a biologist start when learning computational biology & systems biology
data-science
systems-biology
computational-biology
updated 2.6 years ago by
Ram
45k • written 4.2 years ago by
Saber
▴ 60
0
votes
0
replies
827
views
Discriminant gene analysis
selection
genes
discriminant
machine
feature
learning
r
4.2 years ago by
melissachua90
▴ 70
0
votes
7
replies
2.3k
views
STAR vs Novoalign IGV Browser visualization
browser
IGV
novoalign
genome
STAR
updated 4.2 years ago by
benformatics
4.2k • written 4.2 years ago by
chasem
▴ 50
0
votes
0
replies
847
views
Trimming Nextera adapter from scRNA paired reads with different length
scRNA
Adapter
trimming
Trim
Galore
Nextera
4.2 years ago by
almogangel
• 0
1
vote
0
replies
831
views
Find most similar peptide and calculate distance?
align
distance
sequence
peptide
4.2 years ago by
wormball
▴ 10
0
votes
0
replies
867
views
Herald:
The Biostar Herald for Tuesday, August 17, 2021
herald
4.2 years ago by
Biostar
3.6k
3
votes
3
replies
1.4k
views
Whole exome seuqencing capture sequence
Exome
Sequencing
Whole
updated 4.2 years ago by
benformatics
4.2k • written 4.2 years ago by
enho
▴ 60
0
votes
3
replies
2.2k
views
Issue reading fasta file with Biopython
python
4.2 years ago by
Rox
★ 1.5k
0
votes
2
replies
3.0k
views
How to get data from GEO by using getGEO function ?
RNA-Seq
R
updated 4.2 years ago by
yuanyuan
• 0 • written 5.6 years ago by
11818480
• 0
3
votes
1
reply
2.4k
views
Interpretation of .gfa
flye
bandage
assembly
4.2 years ago by
Rox
★ 1.5k
0
votes
0
replies
589
views
Mapping quality and XS score
igv
4.2 years ago by
jennyp0706
▴ 10
0
votes
5
replies
2.4k
views
Trimmomatic 0.39 Permission denied accessing fastq.gz
RNA-seq
trimmomatic
4.2 years ago by
e.wing
• 0
4
votes
6
replies
5.8k
views
Ion Torrent BAM and FASTQ
NGS
TorrentBaseCaller
FASTQ
BAM
IonExporter
updated 4.2 years ago by
5heikki
11k • written 4.2 years ago by
Rajitha
• 0
0
votes
1
reply
983
views
Using protein domains for annotation validation
Interpro
annotation
domain
InterproScan
updated 4.2 years ago by
Jean-Karim Heriche
27k • written 4.2 years ago by
liorglic
★ 1.5k
4
votes
2
replies
1.6k
views
Ubuntu on Windows 10 - using Command line
Commandline
Linux
Git
Ubuntu
4.2 years ago by
WUSCHEL
▴ 860
1
vote
1
reply
950
views
extract entire header from BED file to FASTA
bedtools
getfasta
updated 4.2 years ago by
liorglic
★ 1.5k • written 4.2 years ago by
amitpande74
▴ 20
3
votes
3
replies
1.3k
views
Develop a new RNA Seq pipeline
Rna-seq
pipeline
updated 3.2 years ago by
Chris
▴ 360 • written 4.2 years ago by
Ashish
• 0
0
votes
1
reply
1.1k
views
Extracting variations in the gene regions and from 100 bp of gene boundary from multiple VCF files
VCF
Variations
updated 4.2 years ago by
Tm
★ 1.1k • written 4.2 years ago by
VenGeno
▴ 100
0
votes
0
replies
592
views
Codeml giving different chi2 values when reducing the number of sequences
PAML
CODEML
4.2 years ago by
Amay
▴ 10
0
votes
0
replies
664
views
VcfSampleCompare - empty output with warnings
VcfSampleCompare
empty
warnings
4.2 years ago by
Michal Nevo
▴ 140
0
votes
0
replies
751
views
PCA on pooled and single individuals
PCA
analysis
component
pooled
principal
structure
samples
population
4.2 years ago by
javiergandasegui
• 0
0
votes
0
replies
655
views
KAAS: Limiting The Genes Associated With a Pathway to a Certain Species
KEGG
KAAS
pathway
metabolic
4.2 years ago by
adhamzul
▴ 20
4
votes
5
replies
3.5k
views
6 follow
TopHat error: IOError [errno 2] No such file or directory: '-o'
RNA-Seq
rna-seq
alignment
software error
updated 6.5 years ago by
Kristoffer Vitting-Seerup
★ 4.2k • written 6.5 years ago by
lishen0709
• 0
0
votes
0
replies
678
views
Extract peptide information from proteomics data
proteomics
peptide
4.2 years ago by
Gene_MMP8
▴ 250
0
votes
0
replies
455
views
linking RNA-seq data with GWAS study
ngs
4.2 years ago by
hafiz.talhamalik
▴ 350
11
votes
7
replies
16k
views
How to include/keep only the samples in a list in VCF.gz file?
vcf
samples
bcftools
updated 2.9 years ago by
Pierre Lindenbaum
166k • written 7.3 years ago by
DanielC
▴ 210
0
votes
0
replies
1.0k
views
What is a good Standardized Beta/standardized regression coefficient in a genetics study?
regression
genetics
genomics
updated 2.6 years ago by
Ram
45k • written 4.2 years ago by
jon.klonowski
▴ 210
122,013 results • Page
595 of 2441
Recent Votes
BCFtools consensus sequence
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Comment: Reading AD and other genotype information from the VCF file
Answer: 1 vs 1 DEG analysis in scrna seq data
Comment: installation of package ‘DESeq2’ had non-zero exit status
Answer: Recommendations for 200 SNP markers genotyping
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Answer: 1 vs 1 DEG analysis in scrna seq data
by
ATpoint
89k
The only option you have is to treat every single cell as a replicate. That has the obvious downside that any effect can be a donor-unique …
Answer: GUI commercial software for 10x single cell gene expression analysis
by
firestar
★ 1.7k
An open-source option: [kana](https://www.kanaverse.org/kana/).
Comment: Brave: Bioinformatics Reactive Analysis and Visualization Engine
by
Edward
• 0
Yes, we plan to make English the primary language of the Brave UI.
Comment: Reasonable number of SNPs in a bacterial genome.
by
michael.ante
★ 4.0k
If your bacterial species is a (human) pathogen, you might want to check outbreak analysis papers of that species. In general, you find t…
Comment: hisat2 error-Paired end reads not equal or lack of RAM/disk space?
by
lieven.sterck
16k
ok, missed that ... in any case that should not happen indeed. How did you determine that the files are not equal? I can indeed also see t…
Comment: Brave: Bioinformatics Reactive Analysis and Visualization Engine
by
Ram
45k
Do you have a plan to make an English version of the UI?
Comment: Brave: Bioinformatics Reactive Analysis and Visualization Engine
by
Edward
• 0
This can visualize the parameters of the generated workflow, software, and scripts, and manage the docker process of the script, software, …
Comment: Brave: Bioinformatics Reactive Analysis and Visualization Engine
by
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89k
Can you summarize in one sentence what the use case is? Is this a workflow manager?
Comment: Pseudogene - scarce info
by
ATpoint
89k
This reminds me strongly on my "masters" courses (doesn't deserve that name tbf). "Here is some poorly-described project with little to no …
Answer: scVI vs Harmony, which is better for cell type based clustering in brain tissue?
by
ATpoint
89k
There is no "better" is my experience. It always depends on the dataset. Try both and integrate your biological knowledge to decide which m…
Comment: DESeq2 on metagenome KO counts
by
Aleksandra
▴ 190
I just wrote that I misunderstood your initial question.
Comment: DESeq2 on metagenome KO counts
by
Aleksandra
▴ 190
What exactly did I not get?
Comment: Interpreting genomic features distribution for CUT&RUN peaks
by
rfran010
★ 1.7k
If I understand correctly, you see increased signal at TSS sites compared to control (taller peaks in browser). However, 92% of the 450 siS…
Comment: combine VCF from diploid reference/haplotypes for the same sample
by
cmdcolin
★ 4.3k
this question is a little similar to your previous question (https://www.biostars.org/p/9614638/). just as added info, here is a tool calle…
Comment: hisat2 error-Paired end reads not equal or lack of RAM/disk space?
by
aj123
▴ 130
As mentioned above, I just got the raw fastq files from the ftp site listed.
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