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122,007 results • Page
612 of 2441
Sort: Rank
Rank
Views
Votes
Replies
1
vote
2
replies
1.4k
views
Start with MrBayes
MrBayes
updated 4.2 years ago by
Sej Modha
5.3k • written 4.2 years ago by
Maria
• 0
0
votes
0
replies
769
views
Job:
Postdoc Molecular Mechanisms of Cell State Transitions - Information Management and Information Infrastructure
germany
bioimaging
postdoc
updated 2.6 years ago by
Ram
45k • written 4.2 years ago by
christina.klaere
• 0
0
votes
0
replies
791
views
Tool:
Manticore: a software to extract the intermixed regions of subgenomes in hybrid species
mapping
hybrid
subgenome
genomics
sequencing
4.2 years ago by
Matteo Schiavinato
★ 3.7k
0
votes
0
replies
583
views
E.coli Promoter sequence
Sequence
Promoter
E.coli
RegulonDB
4.2 years ago by
fufor_b
• 0
3
votes
1
reply
2.0k
views
Tool:
all2vcf: a tool to convert non-standard variant outputs (mummer. bcftools isec) to VCF
mummer
isec
variant
bcftools
VCF
updated 3.0 years ago by
ayeshatariq78
• 0 • written 4.2 years ago by
Matteo Schiavinato
★ 3.7k
0
votes
2
replies
1.0k
views
Does PLINK2 have the function of batch processing ?
batch
processing
plink2
updated 4.2 years ago by
Dave Carlson
★ 2.2k • written 4.2 years ago by
Julia_W
• 0
9
votes
10
replies
8.2k
views
8 follow
Which method is the best for using in "dba.count" in Diffbind R package
ChIP-Seq
diffbind
updated 23 months ago by
Rory Stark
★ 2.1k • written 6.0 years ago by
m.sadman.sakib
▴ 120
0
votes
0
replies
858
views
GFF/GTF: how to translate CDS genomic coordinates to protein coordinates
GTF
GFF3
updated 4.2 years ago by
Juke34
9.3k • written 4.2 years ago by
abascalfederico
★ 1.2k
3
votes
5
replies
2.6k
views
Does Last aligner only outputs the mapped reads to a bam file ?
assembly
alignment
sequencing
next-gen
genome
updated 4.2 years ago by
changhaiduan
• 0 • written 7.2 years ago by
pinn
▴ 210
0
votes
0
replies
1.6k
views
Tool:
Handy online tool for genomic analysis and data visualization - Part I
NGS
Sequencing
updated 2.6 years ago by
Ram
45k • written 4.2 years ago by
Novogene
▴ 510
0
votes
1
reply
1.5k
views
determination of alternate splicing events from assembled transcripts
rna-seq
updated 4.2 years ago by
ponganta
▴ 590 • written 7.2 years ago by
blooming.daisy333
▴ 110
1
vote
1
reply
1.1k
views
GATK VQSR for human WGS
WGS
alignment
genome
updated 4.2 years ago by
samuelandjw
▴ 270 • written 4.2 years ago by
quentin54520
▴ 120
0
votes
0
replies
1.2k
views
GATK MarkDuplicates Metrix issues
Markduplicates
Picard
RNASeq
4.2 years ago by
aka
▴ 10
1
vote
2
replies
4.1k
views
bcftools stats output file specification?
bcftools
stats
4.2 years ago by
Jordi
▴ 60
0
votes
1
reply
935
views
Whole genome sequencing.
NGS
updated 4.2 years ago by
MSRS
▴ 590 • written 4.2 years ago by
Puneeth
• 0
3
votes
8
replies
2.1k
views
Can someone suggest any python script or any script so that I can make modification in my excel sheets or text file ?
code
python
updated 4.2 years ago by
ATpoint
89k • written 4.2 years ago by
sahilbioinf0
• 0
0
votes
0
replies
869
views
How do I create a heat map (ASVs) with corresponding taxonomic rank with ggplot2?
microbiome
heatmap
4.2 years ago by
neokao
• 0
1
vote
5
replies
5.6k
views
Error in `$<-.data.frame`(`*tmp*`, "feature", value = XXX) replacement has YYY rows, data has 0
R
updated 4.2 years ago by
Ram
45k • written 4.2 years ago by
cthangav
▴ 110
1
vote
3
replies
1.4k
views
Featurecount mapping is less
Featurecount
STAR
RNAseq
4.2 years ago by
vinishavvenugopal
▴ 30
0
votes
0
replies
943
views
Gini Index Box plot
RNA-Seq
TCR
R
Seurat
10x
4.2 years ago by
roberts
▴ 60
0
votes
0
replies
729
views
linking BRENDA ligands to InChlKey
InChlKey
CHEBI
enzyme
BRENDA
4.2 years ago by
bioguy
▴ 50
0
votes
2
replies
1.8k
views
Gblocks file not opened error
Conserved
MSA
regions
updated 4.2 years ago by
brian.fristensky
▴ 460 • written 4.2 years ago by
sa.youssef
• 0
1
vote
4
replies
2.1k
views
Reading and normalizing raw data on R
GEO
normalization
R
4.2 years ago by
Fate
• 0
1
vote
2
replies
1.0k
views
Gene annotations of HLA-A genes
genes
A11
HLA-A2
annotation
genome
A3
gene
4.2 years ago by
zhang.wen81
• 0
0
votes
0
replies
773
views
HLA typing of SCC152 cell lines
copy
cell
number
lines
SCC152
RNA-seq
E7
typing
HLA
4.2 years ago by
zhang.wen81
• 0
0
votes
0
replies
1.2k
views
HLA haplotypes VCF
HLA
Haplotype
VCF
4.2 years ago by
rubic
▴ 270
2
votes
3
replies
1.2k
views
Are there risks to use a GRCh38 gtf and a hg19 fa in alignment?
RNASeq
updated 4.2 years ago by
swbarnes2
15k • written 4.2 years ago by
ddzhangzz
▴ 90
2
votes
2
replies
2.8k
views
BWA error: [bwa_idx_build] fail to open file 'ref.fa' : No such file or directory
BWA
updated 4.2 years ago by
swbarnes2
15k • written 4.2 years ago by
David
• 0
0
votes
0
replies
1.7k
views
Job:
Looking for Intern, Junior positions in bioinformatics/computational biology
oncology
biostatistics
R
updated 4.2 years ago by
cpad0112
21k • written 4.2 years ago by
Sergio
• 0
0
votes
1
reply
769
views
inexpensive method to detect SNPs in entire bacterial genomes
bacteria
SNPs
RFLP
genome
updated 4.2 years ago by
Mensur Dlakic
★ 30k • written 4.2 years ago by
sapuizait
▴ 10
25
votes
5
replies
9.9k
views
Conda, bioconda, anaconda, are they different?
Conda
anaconda
bioconductor
bioconda
4.2 years ago by
hamid.gaikani
▴ 80
1
vote
2
replies
1.2k
views
Precomputed MSAs for human proteome
proteome
msa
4.2 years ago by
david.f.stein
▴ 10
1
vote
3
replies
2.9k
views
How to perform logistic regression (with option “firth-fallback”) in Plink2
plink
updated 4.2 years ago by
chrchang523
11k • written 4.2 years ago by
MAPK2
▴ 50
2
votes
1
reply
1.6k
views
Understanding the number of intersection in bedtools jaccard
bedtools
comparison
vcf
snps
updated 4.2 years ago by
i.sudbery
22k • written 4.2 years ago by
QLFblaireau
▴ 30
3
votes
3
replies
2.5k
views
homebrew Vs bioconda
homebrew
bioconductor
updated 4.2 years ago by
Juke34
9.3k • written 4.2 years ago by
hamid.gaikani
▴ 80
1
vote
5
replies
1.6k
views
Filter unique values over columns from a dataframe in R
gene
R
updated 4.2 years ago by
cpad0112
21k • written 4.2 years ago by
conor.whelan
▴ 10
14
votes
18
replies
8.9k
views
Python script to calculate properties of amino acids
python
updated 2.8 years ago by
Ram
45k • written 4.2 years ago by
anasjamshed
▴ 140
6
votes
4
replies
2.9k
views
How can read-count from BAM file be greater than than from fastq file?
rna-seq
updated 4.2 years ago by
i.sudbery
22k • written 4.2 years ago by
c_u
▴ 530
2
votes
3
replies
1.3k
views
Generate consensus from a BAM file to each of the variants
bam
coinfection
consensus
ivar
4.2 years ago by
fhsantanna
▴ 620
4
votes
4
replies
2.5k
views
RNA variant calling, aligned with HiSat2
hisat2
gatk
splitncigar
4.2 years ago by
OhHiImNewHere
▴ 10
1
vote
2
replies
1.2k
views
How to pick top 50 the most abundant pathways?
pathways
abundant
4.2 years ago by
arshad1292
▴ 110
1
vote
1
reply
1.1k
views
News:
Online Course - A Practical Introduction to NGS Data Analysis (September 15-17, 2021)
workshop
DNAseq
RNAseq
updated 4.2 years ago by
MSRS
▴ 590 • written 4.2 years ago by
David Langenberger
11k
2
votes
3
replies
1.8k
views
snakemake error: MissingInputException
pipeline
snakemake
updated 4.2 years ago by
Jianyu
▴ 580 • written 4.2 years ago by
tomilova.ekaterina.rp
• 0
0
votes
1
reply
867
views
Adding fakes genotypes columns to a vcf file
bcftools
vcftools
vcf
genotype
updated 4.2 years ago by
sbstevenlee
▴ 480 • written 4.2 years ago by
xerigaj492
• 0
0
votes
0
replies
663
views
metagenemark model file
metagenemark
metagenome
prokaryote
4.2 years ago by
bioinfo_ga
▴ 70
5
votes
6
replies
2.1k
views
Any Tools to calculate specific gene coverage from BAM file?
Coverage
4.2 years ago by
koay
• 0
45
votes
2
replies
39k
views
Tutorial:
Mapping Reads With Bwa And Bowtie
bowtie
bwa
updated 2.6 years ago by
Ram
45k • written 13.5 years ago by
MSU course 2011
▴ 540
0
votes
1
reply
1.0k
views
Association analysis with SNP
association
WGS
GWAS
SNP
WES
updated 4.2 years ago by
Collin
▴ 1000 • written 4.2 years ago by
cwwong13
▴ 40
1
vote
2
replies
1.4k
views
Batch verify hairpin structure
miRNA
4.2 years ago by
153348734
• 0
1
vote
1
reply
1.8k
views
ChEMBL ID to Ensembl ID
ChEMBL
Ensembl
updated 4.2 years ago by
Pratik
★ 1.1k • written 4.2 years ago by
Shicheng Guo
★ 9.6k
122,007 results • Page
612 of 2441
Recent Votes
Comment: Recommendations for 200 SNP markers genotyping
Recommendations for 200 SNP markers genotyping
Answer: Recommendations for 200 SNP markers genotyping
Answer: Recommendations for 200 SNP markers genotyping
Comment: GUI commercial software for 10x single cell gene expression analysis
Comment: GUI commercial software for 10x single cell gene expression analysis
Comment: How to handle TrEMBL proteins without gene annotation in plasma proteomics?
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Answer: DESeq2 on metagenome KO counts
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(I apologise for my previous reply; I wanted to be as detailed as possible) DESeq2 handles KO counts perfectly well. For a time-series des…
Comment: DESeq2 on metagenome KO counts
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▴ 180
I apologise for how that sounded; I wanted to be as detailed as possible.
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A comment on: "*Wonky analysis is possible even with open-source R libraries.*" True - and arguably, the risk of a wonky analysis is actua…
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Found a few more when I asked around. I have no idea how good or bad these are. If anyone has used these or knows more about these, feel fr…
Comment: How to handle TrEMBL proteins without gene annotation in plasma proteomics?
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154k
> I performed a standard proteomics screening workflow What database did you use to search against? Perhaps you are using an old (not so c…
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by
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89k
No, it's unrelated. Doublets in 10x happen if two cells get enclosed into the same GEM droplet. This has nothing to do with how flow cytome…
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Apparently you are working with human proteins? I would strongly recommend looking only at proteins that are part of the human reference pr…
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8.0k
Wow, thats too long. How much RAM does your machine have, it is likely swapping
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by
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★ 2.4k
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by
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▴ 240
Thank you but sorry, your answer sounds very AI-based...
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For basic analysis, discard anything that isn't from Swiss-Prot. Your statistics and pathway analysis should only be based on reliable, ann…
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For a 200-SNP panel at your sample throughput, I would recommend an amplicon-based targeted sequencing approach. The workflow involves des…
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There are *a lot* of factors that can impact the number of identified SNPs. These include things like: - Evolutionary distance from samp…
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by
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▴ 40
The massive difference has been reproducible across the 3 biological replicates and is in line with what we would expect in terms of the bi…
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