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122,007 results • Page
613 of 2441
Sort: Rank
Rank
Views
Votes
Replies
9
votes
10
replies
2.9k
views
How to use Poisson distribution to get meaningful expression counts?
statistics
rna-seq
updated 4.2 years ago by
i.sudbery
22k • written 4.2 years ago by
c_u
▴ 530
3
votes
2
replies
1.2k
views
Add text to fasta header based in a list
fasta
header
R
bash
updated 4.2 years ago by
cpad0112
21k • written 4.2 years ago by
cabraham03
▴ 30
1
vote
2
replies
1.6k
views
snpEff ERROR_CHROMOSOME_NOT_FOUND GRCh37.75 genome
annotaion
vcf
genomics
variant
snpEff
4.2 years ago by
rbioinfo
▴ 40
1
vote
5
replies
1.7k
views
HaplotypeCaller doesn't output the VCF
BAM
VCF
GATK
HaplotypeCaller
updated 4.2 years ago by
guyho
• 0 • written 4.3 years ago by
Flexogore
▴ 10
0
votes
3
replies
2.2k
views
conversion of case_ids to file_ids TCGA data
TCGA
case_ids conversion
updated 4.2 years ago by
adebola.1
• 0 • written 6.4 years ago by
nazaninhoseinkhan
▴ 530
1
vote
0
replies
866
views
Kaplan Meier Plotter and Competing risk model survival analysis
Competing
risk
anaylsis
model
Kaplan-Meier
4.2 years ago by
aronno.geb
▴ 10
0
votes
0
replies
1.2k
views
Stringtie error : discarding overlapping duplicate miRNA feature
miRNA
stringtie
updated 15 months ago by
Ram
45k • written 4.2 years ago by
Hojn
▴ 30
0
votes
0
replies
535
views
Germline calling with differents sample source
WGS
alignment
genome
4.2 years ago by
quentin54520
▴ 120
7
votes
3
replies
2.9k
views
snakemake to merge bams from multiple samples
snakemake
updated 4.2 years ago by
Jianyu
▴ 580 • written 4.2 years ago by
samuel
▴ 260
1
vote
2
replies
1.5k
views
Bioinformatic tool for acinetobacter plasmids
plasmidseeker
plasmidfinder
plasmid
4.2 years ago by
blur
▴ 280
0
votes
2
replies
1.2k
views
From case uuid to specific file uuid
TCGA
GDC
4.2 years ago by
adebola.1
• 0
1
vote
1
reply
1.7k
views
Fastest way to use pysam view in order to get the reads in different regions
pysam_view
samtools
pysam
bam
optimisation
updated 4.2 years ago by
Jianyu
▴ 580 • written 4.2 years ago by
MarVi
▴ 30
0
votes
2
replies
946
views
RNA without replication 2
RNA-Seq
updated 3.3 years ago by
Ram
45k • written 4.2 years ago by
Bioinformatics1
▴ 10
1
vote
8
replies
2.3k
views
RNA without replication
RNA-Seq
updated 3.3 years ago by
Ram
45k • written 4.2 years ago by
Bioinformatics1
▴ 10
5
votes
5
replies
4.0k
views
Adapter trimming
Trimmomatic
Fastqc
Adapter
updated 4.2 years ago by
brian.fristensky
▴ 460 • written 4.2 years ago by
GenesisBio
• 0
2
votes
1
reply
880
views
why is important to identify genetic risk variants?
genetic
risk
variants
updated 4.2 years ago by
Kevin Blighe
89k • written 4.2 years ago by
Sakhaa
▴ 10
0
votes
0
replies
608
views
3D protein modeling and Docking studies
modeling
3D-
Docking
4.2 years ago by
aronno.geb
▴ 10
0
votes
0
replies
530
views
Constraint based modelling, Flux Balance analysis
analysis
Flux
Balance
4.2 years ago by
ShiwangiW
• 0
3
votes
2
replies
4.3k
views
Why ATAC-seq/CUT&RUN need paired-end sequencing?
HiC
sequencing
updated 4.2 years ago by
mjchen.gene
• 0 • written 6.3 years ago by
liyc.stjude
• 0
1
vote
3
replies
1.9k
views
Using BiomaRt returns to get entrez gene ids returns an error. Why is this happening?
BiomaRt
R
4.2 years ago by
peter.berry5
▴ 60
1
vote
6
replies
2.5k
views
mapper.pl gives empty output
miRDeep2
Bowtie
mapper.pl
updated 4.2 years ago by
ponganta
▴ 590 • written 4.2 years ago by
Bane
▴ 30
1
vote
4
replies
2.2k
views
Abnormal fastq lines
fastq-file-error
SRR-flile
mapping-error
updated 4.2 years ago by
GenoMax
154k • written 4.2 years ago by
jaqx008
▴ 110
0
votes
0
replies
749
views
Error : no alignment column
Phylip
python
Vcf
Iqtree
4.2 years ago by
Kagisoralph
• 0
8
votes
6
replies
2.3k
views
Use bioinformatics tool in iphone 7
megax
chimera
Android
modeler
updated 2.8 years ago by
Ram
45k • written 4.2 years ago by
anasjamshed
▴ 140
5
votes
3
replies
4.0k
views
How to loop to use trimmomatic for multiple fastq files?
linux
trimmomatic
updated 4.2 years ago by
brian.fristensky
▴ 460 • written 4.2 years ago by
pavelasquezv
▴ 50
0
votes
2
replies
1.2k
views
NGS QC metrics ( comparison )
QC
metrics
NGS
4.2 years ago by
jovecit478
• 0
2
votes
1
reply
1.5k
views
How do you update plink bim file to remove 'chr' string?
plink
updated 4.2 years ago by
chrchang523
11k • written 4.2 years ago by
MAPK2
▴ 50
1
vote
3
replies
1.6k
views
Troubleshooting Missing_Read_Group and Mismatch_Flag_Mate Errors
Picard
BWA
updated 4.2 years ago by
GenoMax
154k • written 4.2 years ago by
shpak.max
▴ 60
0
votes
0
replies
560
views
Fine Mapping Program (FOCUS) Stalling on Chromosome 6
FOCUS
mapping
fine
updated 4.2 years ago by
Ram
45k • written 4.2 years ago by
MacKenzie
• 0
0
votes
1
reply
1.2k
views
How to conduct a genomic SEM with GxE term and term for G effect on E?
sem
gwsem
gwas
GxE
genomic
updated 4.2 years ago by
Lemire
▴ 940 • written 4.2 years ago by
paulwjeffries
▴ 10
0
votes
0
replies
682
views
Correct way of calculating Titv ratios for QC
QC
titv
WES
ratio
4.2 years ago by
diana.cornejo
• 0
2
votes
5
replies
2.5k
views
RNA sequence analyzing data using R after DESeq2 (illumina)
RNA-Seq
updated 3.3 years ago by
Ram
45k • written 4.2 years ago by
Bioinformatics1
▴ 10
0
votes
3
replies
4.5k
views
How to calculate R2 from GWAS summary statistics?
GWAS
MLM
LMM
chi-square
R2
4.2 years ago by
okiedokie1208
▴ 40
0
votes
3
replies
1.2k
views
Differential expression design considerations
RNA-Seq
Limma
DE
Differential_Expression
4.2 years ago by
bioinf.questions
• 0
2
votes
1
reply
1.2k
views
Multiple BAM files (ccs) input with Lima (PacBio)
Long-read-sequencing
PacBio
updated 18 months ago by
Ram
45k • written 4.2 years ago by
aa9gj
▴ 10
0
votes
0
replies
989
views
RNA-seq raw counts normalization for survival analysis
survival
tcga
RNA-Seq
r
4.2 years ago by
fifty_fifty
▴ 90
0
votes
1
reply
943
views
Statistic Method Question: How to display correlation from pheatmap with other data
RNA-seq
correlation
Bioconductor
pheatmap
updated 4.2 years ago by
dioscorea.bulbifera
▴ 10 • written 4.2 years ago by
Qamarul
• 0
0
votes
2
replies
1.3k
views
alternatives to replication for GWAS
replication
discovery
GWAS
4.2 years ago by
putty
▴ 40
2
votes
0
replies
946
views
Tool:
metaGEM: create your own genome scale metabolic models directly from metagenomes
metagenomics
metagenome-assembled-genome
genome-scale-metabolic-model
metabolism
updated 4.2 years ago by
Ram
45k • written 4.2 years ago by
metagenomez
▴ 20
0
votes
2
replies
1.1k
views
Queries regarding Network analysis of Differentially expressed genes.
Network-analysis
Stringdb
updated 2.6 years ago by
Ram
45k • written 4.2 years ago by
Saransh
• 0
0
votes
2
replies
1.0k
views
transfer parameter to reader group in bwa mem command
bwa
4.2 years ago by
Chenfei Zheng
▴ 60
2
votes
2
replies
1.2k
views
R programming: basics to challenging
R
updated 4.2 years ago by
ATpoint
89k • written 4.2 years ago by
pixie@bioinfo
★ 1.5k
1
vote
0
replies
1.8k
views
Job:
Bioinformatician with software engineering skills at DTU Biosustain
SQL
GitHub
updated 2.6 years ago by
Ram
45k • written 4.2 years ago by
info
▴ 80
0
votes
2
replies
1.4k
views
How can I do hypothesis test for continuous dependent variable and two categorical independent variabables which are related?
variable
categorical
Metagenome
statics
updated 4.2 years ago by
Lemire
▴ 940 • written 4.2 years ago by
BioDH
▴ 10
2
votes
2
replies
1.9k
views
Format GISTIC2 all_data_by_genes.txt and cBioPortal
copy
number
output
format
gistic2
cbioportal
updated 11 weeks ago by
Ram
45k • written 4.2 years ago by
mike.rightmire
▴ 20
0
votes
1
reply
1.3k
views
Highlight unique transcripts in Gviz
gviz
updated 4.2 years ago by
C.
• 0 • written 5.3 years ago by
peris_baba
▴ 20
0
votes
6
replies
5.1k
views
The exon numbers of each transcript,
RNA
exon
4.2 years ago by
haasroni
• 0
0
votes
3
replies
2.6k
views
shows the expression of genes in specific cell types in Heatmap
dittoseq
RNA-seq
Seurat
updated 4.2 years ago by
Wocher33
▴ 10 • written 4.2 years ago by
Maria17
▴ 40
0
votes
1
reply
1.8k
views
Error: samtools sort: failed to read header from "-" ARTIC Pipeline for SAR-COV-2
artic
NGS
nanopore
updated 2.6 years ago by
Ram
45k • written 4.2 years ago by
Pratibha kadam
• 0
0
votes
15
replies
4.7k
views
SAMFormatException: Did not inflate expected amount error
WES
updated 3.9 years ago by
greekkey
▴ 30 • written 4.3 years ago by
smrutimayipanda
▴ 20
122,007 results • Page
613 of 2441
Recent Votes
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Comment: GUI commercial software for 10x single cell gene expression analysis
Comment: How to handle TrEMBL proteins without gene annotation in plasma proteomics?
Comment: How to handle TrEMBL proteins without gene annotation in plasma proteomics?
Answer: How to handle TrEMBL proteins without gene annotation in plasma proteomics?
Comment: GUI commercial software for 10x single cell gene expression analysis
Answer: GUI commercial software for 10x single cell gene expression analysis
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I apologise for how that sounded; I wanted to be as detailed as possible.
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Thank you but sorry, your answer sounds very AI-based...
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For basic analysis, discard anything that isn't from Swiss-Prot. Your statistics and pathway analysis should only be based on reliable, ann…
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For a 200-SNP panel at your sample throughput, I would recommend an amplicon-based targeted sequencing approach. The workflow involves des…
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Your proposed workflow is indeed sound, as applying DESeq2 to KO-counts is perfectly valid; its underlying negative binomial model is metho…
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The massive difference has been reproducible across the 3 biological replicates and is in line with what we would expect in terms of the bi…
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