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Recent Replies
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Hello, you may try deSALT (DOI: 10.1186/s13059-019-1895-9, GitHub: ydLiu-HIT/deSALT) or uLTRA (DOI: 10.1093/bioinformatics/btab540, GitHub:…
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Without knowing the details of the Term-seq method, could the 38 nt shift be accounted for by the difference in the position of the ribosom…
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You could give `mapPacBio.sh` from BBMap suite a try while you wait for other answers. That works for reads up to 6 kb. BBMap has a new hom…
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The average is 1.8kb. I was planning to post it on GitHub, but it seems like the repository has been unattended for the last months, so I d…
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Yes, You can either use it on command line or use the graphical user interface.
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What is the average length of your reads? That error sounds like a bug, so you may want to post that on `STAR` repo as an issue.
I assume …
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I want to perform fastQC on my data.Do you use fastQC software for doing it?
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Sorry for the poor wording of the original post, also should say I really appreciate people taking a moment to look at my post. My main con…
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Thanks again for your carefully considered reply. You asked what I am hoping to learn from a DE analysis.
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Hi ATpoint, thank you very much for the helpful insight! I'm still doing some literature reading on this myself, but have you come across a…
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These are PacBio HiFi reads (total reads 5,237,005), and the total data size is 255 GB.
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