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121,984 results • Page
634 of 2440
Sort: Rank
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Votes
Replies
6
votes
12
replies
5.3k
views
Trim bam file reads to remove all nucleotide over a certain length
bam
trimming
updated 4.3 years ago by
GenoMax
154k • written 4.3 years ago by
Juke34
9.3k
47
votes
22
replies
39k
views
17 follow
Multi-Sample Vcf To Phylogenetic Tree.
vcf
updated 16 months ago by
RT
• 0 • written 12.0 years ago by
William
★ 5.4k
1
vote
2
replies
1.9k
views
bcftools filter
filter
bcftools
4.3 years ago by
Gregor Rot
▴ 550
0
votes
2
replies
1.6k
views
A USER ERROR has occurred: Bad input: the IUPAC sample specified is not present in the provided VCF file
GATK
IUPAC
CONSENSUS
VCF
FastaAlternateReferenceMaker
4.3 years ago by
Vanuhi
• 0
0
votes
0
replies
609
views
Motif search in protein list
interactome
motif
search
batch
4.3 years ago by
florian.roehrig
• 0
3
votes
5
replies
2.6k
views
STAR Genome index could not open genomeFastaFile
RNAseq
genome
alignment
STAR
4.3 years ago by
bs58
▴ 10
14
votes
4
replies
4.2k
views
Exclusion Of Regions In Cnv Analysis
plink
updated 3.1 years ago by
Ram
45k • written 13.3 years ago by
bob.obr13n
▴ 60
2
votes
7
replies
1.7k
views
Count the numfer of reads supporting a pattern from a BAM file
samtools
updated 4.3 years ago by
jkbonfield
★ 1.3k • written 4.3 years ago by
User000
▴ 750
11
votes
2
replies
6.8k
views
OrthoFinder: Diamond or Blast? Which is better?
orthofinder
blast
sensitivity
ortholog
updated 3.5 years ago by
Dunois
★ 2.9k • written 4.3 years ago by
greyman
▴ 190
2
votes
4
replies
2.2k
views
Bray Curtis for functional dissimilarity
dissimilarity
bray
curtis
updated 4.3 years ago by
Kevin Blighe
89k • written 4.3 years ago by
statisticsnovice
• 0
0
votes
0
replies
686
views
how to use circos plot to plot euchromation and heterochromatin
perl
circos
plot
4.3 years ago by
szp770
▴ 10
0
votes
0
replies
617
views
Annotations for ReadDepth
CNVs
NGS
ReadDepth
4.3 years ago by
ICfc97
▴ 20
0
votes
1
reply
2.1k
views
Differential Gene Expression Analysis From TMM normalized counts
RNA-Seq
updated 4.3 years ago by
Gordon Smyth
★ 8.3k • written 6.2 years ago by
boyinepallyki
• 0
9
votes
8
replies
8.3k
views
TMM - Normalized FPKM values for RNASeq data ?
RNA-Seq
next-gen
R
updated 4.3 years ago by
Gordon Smyth
★ 8.3k • written 9.4 years ago by
gangireddy
▴ 160
2
votes
0
replies
1.1k
views
What rate of heterozygosity is considered low or high in a plant genome assembly?
heterozygosity
assembly
genome
plant
4.3 years ago by
resug
▴ 40
1
vote
0
replies
619
views
Full protein sequence or only conserved domains
proteins
phylogenetics
4.3 years ago by
Vasiliy Krestov
▴ 30
3
votes
1
reply
1.6k
views
canonical transcript from vep
ensembl
transcript
appris
canonical
tsl
updated 4.3 years ago by
Emily
24k • written 4.3 years ago by
romain.lannes
▴ 90
0
votes
0
replies
854
views
DE analysis with Ballgown; what are DE genes produced from data containing three groups
DGE
R
Ballgown
updated 4.3 years ago by
ATpoint
89k • written 4.3 years ago by
Annika
• 0
1
vote
1
reply
1.6k
views
What is the correct way of setting the genotype after splitting multi-allelic sites in a VCF file?
genotype
bcftools
vcf
updated 4.3 years ago by
Kevin Blighe
89k • written 4.3 years ago by
terdon
▴ 430
0
votes
0
replies
764
views
Nx3 chromosome intrnaction matrix into NxN
matrix
hic
4.3 years ago by
Oleczkaff
• 0
0
votes
2
replies
1.1k
views
Viral taxonomic classification question
taxonomic-classification
viral-metagenomics
4.3 years ago by
v.berriosfarias
▴ 140
2
votes
3
replies
2.7k
views
Ambiguous SNPs
SNPs
updated 4.3 years ago by
Emily
24k • written 4.3 years ago by
nhaus
▴ 420
0
votes
5
replies
1.5k
views
How to compare pathway significances after treatment?
pathway
significance
comparison
4.3 years ago by
Cancan
• 0
2
votes
2
replies
1.3k
views
How to obtain all PDB IDs containing similar binding sites with a specific ligand
protein
PDB
ligand
site
binding
Binding
4.3 years ago by
antoniaa
▴ 30
0
votes
0
replies
895
views
Convert different types of databases to ANNOVAR custom databases
ANNOVAR
CIViC
DoCM
annotation
VCF
4.3 years ago by
Zahra
▴ 110
4
votes
6
replies
1.7k
views
RNA-seq for beginners
reference
resequencing
transcriptome
gtf
sequence
gff
4.3 years ago by
arko.bmb.du
▴ 20
58
votes
5
replies
30k
views
6 follow
How do you generate TMM normalized counts using EdgeR?
R
RNA-seq
edgeR
updated 18 months ago by
inedraylig
▴ 70 • written 4.3 years ago by
Pratik
★ 1.1k
1
vote
5
replies
1.8k
views
filtering dataframe using multiple columns in R
filter
R
dataframe
updated 4.3 years ago by
Ram
45k • written 4.3 years ago by
andreiareis1987
▴ 40
2
votes
5
replies
4.2k
views
Difference between KO and ko numbers?
pathway
updated 4.3 years ago by
andres.firrincieli
3.9k • written 4.3 years ago by
deep771992chanda
▴ 40
1
vote
1
reply
2.0k
views
How to tell if our ligand-protein docking is good from AutoDock Vina's result
protein-structure
vina
autodock
docking
pdb
updated 4.3 years ago by
Mensur Dlakic
★ 30k • written 4.3 years ago by
gundalav
▴ 380
1
vote
5
replies
2.0k
views
How to convert a STK alignment into CLUSTAL?
Boundaries
structure
RNA
updated 4.3 years ago by
Pratik
★ 1.1k • written 4.3 years ago by
diego1530
▴ 80
1
vote
4
replies
1.5k
views
bgr files: change chromosome annotation
sed
bedgraph
expressions
awk
updated 4.3 years ago by
ATpoint
89k • written 4.3 years ago by
TheCatalyst
• 0
0
votes
0
replies
702
views
Cut&Run Matrix Generation
CUTANDRUN
CUTANA
4.3 years ago by
Mohammed
▴ 10
0
votes
1
reply
778
views
How to handle "no call" on SNP imputation results
GWAS
SNP
genotype
Imputation
updated 4.3 years ago by
Kevin Blighe
89k • written 4.3 years ago by
Babbala
• 0
0
votes
0
replies
678
views
Genome reference fpr variant annotation of deleterious variants?
variants
reference
genome
annotation
deleterious
functional
prediction
4.3 years ago by
ja569116
• 0
8
votes
11
replies
4.1k
views
directionality of RRBS
directional
non-directional
RRBS
updated 4.2 years ago by
Papyrus
★ 3.1k • written 4.3 years ago by
basuanubhav
▴ 140
0
votes
3
replies
1.2k
views
Human Genome
GRCH37
updated 4.3 years ago by
a.alnawfal.1992
▴ 360 • written 4.3 years ago by
akshitiz09
▴ 20
7
votes
14
replies
5.5k
views
GTF file how do I search for duplicates of Gene ID and print them out
GTF
Bash
updated 4.3 years ago by
Pratik
★ 1.1k • written 4.3 years ago by
So
▴ 10
3
votes
2
replies
1.1k
views
Finding a Protein from Pepdites sequence
BLASTP
updated 4.3 years ago by
Mensur Dlakic
★ 30k • written 4.3 years ago by
deanvitn
▴ 10
7
votes
5
replies
2.4k
views
How can I extract protein sequence from gff file?
sequence
bash
gff
updated 4.3 years ago by
drew.b.ferrell
▴ 140 • written 4.3 years ago by
amal.elzemrany
▴ 30
1
vote
6
replies
10k
views
GATK Input files reference and features have incompatible contigs: No overlapping contigs found.
reference
gatk
4.2 years ago by
Jordi
▴ 60
2
votes
2
replies
1.2k
views
Find the transcripts of genomic coordinates
Python
updated 4.3 years ago by
Sukjun Kim
▴ 90 • written 4.3 years ago by
bandeiraajr
• 0
0
votes
5
replies
1.4k
views
Looking for data
epistasis
updated 4.3 years ago by
Kevin Blighe
89k • written 4.3 years ago by
Mollie
▴ 10
0
votes
0
replies
535
views
Uneven numbers of phenotype and genotype
GenEpi
4.3 years ago by
Mollie
▴ 10
2
votes
4
replies
1.6k
views
MagicBLAST only using one thread
MagicBLAST
updated 4.3 years ago by
Arsenal
▴ 160 • written 4.3 years ago by
daewowo
▴ 80
0
votes
5
replies
1.3k
views
Converting plink to GenEpi files
plink
GenEpi
updated 4.3 years ago by
4galaxy77
2.9k • written 4.3 years ago by
Mollie
▴ 10
11
votes
7
replies
15k
views
7 follow
Is there a way to download FASTq files from SRR IDs?
eutility
fastq
sra
updated 4.3 years ago by
Sukjun Kim
▴ 90 • written 8.2 years ago by
Paul
▴ 80
5
votes
7
replies
5.8k
views
fastq-dump error
SRAToolkit
fastq-dump
updated 2.3 years ago by
Ram
45k • written 4.3 years ago by
maedeyousefzade96
• 0
3
votes
4
replies
1.5k
views
bowtie2 unaligned option not writing to file
bowtie2
updated 4.3 years ago by
seidel
11k • written 4.3 years ago by
daewowo
▴ 80
0
votes
1
reply
722
views
interpretation of vcf calls
SNP
updated 4.3 years ago by
Ram
45k • written 4.3 years ago by
evafinegan
• 0
121,984 results • Page
634 of 2440
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