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122,198 results • Page
635 of 2444
Sort: Rank
Rank
Views
Votes
Replies
0
votes
1
reply
930
views
How to interpret terms with “positive” and “negative” specifiers
gene
GO
term
ontology
4.4 years ago by
chriselhadi
• 0
2
votes
1
reply
1.1k
views
Error: unexpected symbol using BiomaRt in R
ensembl
r
biomart
biomaRt
R
updated 4.4 years ago by
Kevin Blighe
★ 90k • written 4.4 years ago by
andreadcass
• 0
4
votes
1
reply
2.9k
views
How to tell if enrichment is good or bad from GSEA plot
genes
gsea
enrichment
updated 4.4 years ago by
Kevin Blighe
★ 90k • written 4.4 years ago by
gundalav
▴ 380
3
votes
2
replies
1.1k
views
whole genome analyses
python
updated 4.4 years ago by
ashishjayamohan
• 0 • written 4.4 years ago by
Rima
▴ 20
3
votes
5
replies
3.2k
views
generate FASTA/MSA from VCF file
VCF
MSA
FASTA
updated 3.9 years ago by
Ritu_K
▴ 40 • written 4.4 years ago by
puddingmeow516
▴ 10
1
vote
1
reply
1.8k
views
Primer matching with sequence using biopython
primers
Biopython
alignment
updated 4.4 years ago by
Dunois
★ 2.9k • written 4.4 years ago by
iqrajaved323
• 0
0
votes
4
replies
2.7k
views
Can't index .bed file with tabix
bed
tabix
leafcutter
updated 4.4 years ago by
cmdcolin
★ 4.4k • written 4.4 years ago by
zjardyn
• 0
1
vote
2
replies
1.4k
views
Fasta file for Whole exome sequencing analysis
WES
Gencode
updated 2.7 years ago by
Ram
45k • written 4.4 years ago by
tomer9w
• 0
0
votes
3
replies
1.4k
views
Snakefile - problem with too many outputs
snakemake
snakefile
updated 4.4 years ago by
liorglic
★ 1.5k • written 4.4 years ago by
ja4123
▴ 30
0
votes
0
replies
909
views
LOESS Normalization Explanation
proteomics
pre-processing
InfernoRDN
normalization
4.4 years ago by
gt
▴ 30
0
votes
5
replies
1.9k
views
about bowtie parameter --fr and --rf
ATAC
reads
paired
bowtie2
updated 4.4 years ago by
ATpoint
90k • written 4.4 years ago by
ch8316f5eyu
▴ 10
0
votes
1
reply
1.1k
views
Combining NES and FDR q-values over gene set clusters (Enrichmentmap) in GSEA
GSEA
4.4 years ago by
lsy9
▴ 20
2
votes
3
replies
1.5k
views
Get upstream and downstream exon's starting site and ending site of an retained introns
RNAseq
updated 4.4 years ago by
ATpoint
90k • written 4.4 years ago by
Kai_Qi
▴ 130
3
votes
3
replies
4.3k
views
GCTA make GRM error contains illegal chr number
plink
GCTA
4.4 years ago by
Star:)
▴ 50
0
votes
0
replies
474
views
Combining 2 sets of samples.
Gwas
updated 4.4 years ago by
ATpoint
90k • written 4.4 years ago by
Lumos
• 0
0
votes
5
replies
1.6k
views
FeatureCounts Number of Reads
RnaSeq
FeatureCounts
updated 4.4 years ago by
ATpoint
90k • written 4.4 years ago by
santos48
▴ 40
7
votes
3
replies
2.1k
views
high duplication events in shotgun metagenomics
MAG
metagenomics
duplication
4.4 years ago by
alexis
▴ 30
3
votes
7
replies
5.4k
views
Plink 1.9 "File read failure" error when merging with --bmerge
plink
gwas
error
updated 4.4 years ago by
okiedokie1208
▴ 40 • written 6.8 years ago by
svendula
▴ 20
0
votes
1
reply
770
views
Dual RNA-seq differential gene expression analysis
deseq2
rnaseq
dual
updated 4.4 years ago by
ATpoint
90k • written 4.4 years ago by
Karla
• 0
0
votes
4
replies
1.8k
views
Compare gene coverage across group o samples
gene
coverage
4.4 years ago by
roalva1
▴ 100
5
votes
13
replies
3.7k
views
Bowtie2 problem when use aligned or unaligned output file for re-alignment
bowtie2
4.4 years ago by
daewowo
▴ 80
0
votes
0
replies
801
views
retrieve all significant motifs from meme suite programs
meme
4.4 years ago by
boczniak767
▴ 880
0
votes
2
replies
1.2k
views
How can each file be commanded separately with multiple files in R??
R
updated 2.4 years ago by
Ram
45k • written 4.4 years ago by
Hyeong Seok
• 0
1
vote
1
reply
2.1k
views
What format should a dataframe be in to use the AddMetaData function in Seurat?
seurat
R
RNA-Seq
rna-seq
scRNA-seq
4.4 years ago by
Pratik
★ 1.1k
9
votes
5
replies
17k
views
How to read a dataframe into Seurat for AddMetaData properly?
seurat
rna-seq
RNA-Seq
R
4.4 years ago by
Pratik
★ 1.1k
0
votes
0
replies
1.4k
views
MGLTOOLS
Docking
Autodock
Macbook
MGLTools
4.4 years ago by
Farnoosh
• 0
0
votes
1
reply
1.0k
views
Does anyone know what BLASTN exact match of 11 means in layman terms?
Blastn
Blast
updated 4.4 years ago by
seidel
11k • written 4.4 years ago by
RoomPoom
• 0
0
votes
0
replies
1.3k
views
How to perform Synteny analysis for a single gene?
alignment
SNP
genome
gene
R
4.4 years ago by
anikcropscience
▴ 270
9
votes
2
replies
9.3k
views
Run STAR on .fastq files I1, R1 and R2
RNA-seq
alignment
STAR
4.4 years ago by
PianoEntropy
▴ 70
8
votes
7
replies
1.9k
views
Co-occurrence of proteins of two families
proteins
BLAST
Co-occurrence
updated 4.4 years ago by
Dunois
★ 2.9k • written 4.4 years ago by
Vladimir Leshuk
▴ 50
2
votes
2
replies
1.3k
views
help for genNullSeqs()
genNullSeqs
4.4 years ago by
koyee_d
▴ 20
0
votes
0
replies
639
views
JContextExplorer
software
JContextExplorer
4.4 years ago by
K.Gee
▴ 40
0
votes
1
reply
1.7k
views
TCGA germline and somatic snvs
TCGA
SNVs
gdc
updated 4.4 years ago by
Zhenyu Zhang
★ 1.3k • written 4.4 years ago by
SUMIT
▴ 30
1
vote
15
replies
8.5k
views
How to Extract Specific Region on Bam file
Nanopore
HG38
Rna-Seq
Genome
updated 4.4 years ago by
Kevin Blighe
★ 90k • written 4.5 years ago by
santos48
▴ 40
12
votes
2
replies
5.7k
views
Add NES value to GSEA plot
R
enrichplot
clusterprofiler
GSEA
updated 4.4 years ago by
Barry Digby
★ 1.4k • written 4.5 years ago by
rykerklie7
▴ 50
2
votes
4
replies
1.8k
views
Viral metagenomics of RNA virus on transcriptomics data workflow
Viral
metagenomics
workflow
4.4 years ago by
bioAddict
• 0
1
vote
0
replies
653
views
Tripal insert menu items
tripal
4.4 years ago by
felipead66
▴ 120
11
votes
10
replies
10k
views
What exactly should and shouldn't go in Combat's model matrix?
batch
effects
expression
gene
combat
updated 4.4 years ago by
Papyrus
★ 3.1k • written 4.5 years ago by
n,n
▴ 390
2
votes
4
replies
1.6k
views
Needs recommendation - Variant Call from RNA seq data of tumor-normal pairs.
variant
call
tumor-normal
RNA-seq
4.4 years ago by
field654
▴ 30
2
votes
3
replies
1.1k
views
export alignment from BAM file
bam
samtools
updated 2.7 years ago by
Ram
45k • written 4.4 years ago by
luca
• 0
0
votes
0
replies
819
views
Select random sequences matched by distance to TSS and width
tss
sequences
random
4.4 years ago by
carinapaola20
• 0
2
votes
1
reply
1.2k
views
Gffread extracts the wrong nucleotides from genome
transcriptomics
harvesting
genome
gff3
gffread
sequence
4.4 years ago by
stephanbitterwolf
▴ 20
11
votes
8
replies
3.7k
views
PHRED scores and sequence errors
sequencing-errors
probability
PHRED
updated 2.5 years ago by
Ram
45k • written 4.4 years ago by
Dunois
★ 2.9k
0
votes
1
reply
2.8k
views
Filter GQ , DP and Allele Balance in VCF
bcftools
balance
allele
alllele
vcf
updated 4.4 years ago by
sbstevenlee
▴ 480 • written 4.4 years ago by
just learning
• 0
1
vote
6
replies
2.3k
views
HeatMap
dittoseq
heatmap
4.4 years ago by
barix
▴ 20
3
votes
2
replies
2.1k
views
Binding matrix created by DiffBind
DiffBind
atac-seq
dba
updated 2.5 years ago by
Ram
45k • written 4.5 years ago by
sh.kazempour94
▴ 20
3
votes
8
replies
2.4k
views
Edit Headers of Fasta file
header
fasta
updated 4.4 years ago by
Ram
45k • written 4.4 years ago by
NewtoBioinfo
• 0
1
vote
1
reply
725
views
Gene network
Gene
network
updated 4.4 years ago by
Chen
• 0 • written 4.4 years ago by
Zineb
▴ 10
0
votes
7
replies
2.9k
views
Trimming SOLiD adapters
SOLiD
adapters
Trimming
updated 4.4 years ago by
h.mon
35k • written 4.4 years ago by
kimmitzka
• 0
2
votes
2
replies
1.3k
views
Available annotation file for the PacBio Iso-seq data
sequencing
updated 4.4 years ago by
GenoMax
154k • written 5.9 years ago by
Sara
▴ 280
122,198 results • Page
635 of 2444
Recent Votes
Answer: Feature Counts vs Salmon quantification
Comment: Feature Counts vs Salmon quantification
Answer: Can i use orthofinder for small protein datasets and not full proteome?
Comment: Comparison of different RNAseq data sets
Comment: ID unifiying across different datasets
Comment: ID unifiying across different datasets
Comment: snpEff: Unsupported structural variant types
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Comment: ID unifiying across different datasets
by
GenoMax
154k
In this case the entry notes that this is likely the product of a pseudogene: https://www.uniprot.org/uniprotkb/Q5VTE0/entry and existence …
Comment: Comparison of different RNAseq data sets
by
DrSmad
▴ 10
Each lab contributes both control and LPS. Example, for cell line A_lab1 did and analysis on control and LPS-6h. Cell line B_lab2 did contr…
Comment: ID unifiying across different datasets
by
zizigolu
★ 4.4k
sorry, why some gene names are often lacking though the Uniprot ID is still valid (using biomart)?
Comment: snpEff: Unsupported structural variant types
by
shpak.max
▴ 70
Unfortunately, while it ran without a problem initially, when I checked the run screen today, I saw the following error message (and unlike…
Comment: ID unifiying across different datasets
by
GenoMax
154k
You can use the [**ID mapping tool**][1] from UniProt site (third ID did not map from the list above): From To P68104 ENSG0000015…
Answer: The geo samples is not having sentrix id and sentrix position. But this informat
by
yura.grabovska
▴ 890
Crosspost from related question: https://www.biostars.org/p/9616466/#9616534 ``` ##Using R, illuminaio from Bioconductor library(…
Answer: Finding Sentrix ID in HM450K arrays
by
yura.grabovska
▴ 890
``` ##Using R, illuminaio from Bioconductor library(illuminaio) temp.idat <- readIDAT(file = "200379120087_R02C02_Grn.idat") tem…
Comment: Can i use orthofinder for small protein datasets and not full proteome?
by
michael.ante
★ 4.0k
Do you want to compare them by sequence or by function? For the later, you can use e.g. InterProScan, KoFamScan.
Answer: Can i use orthofinder for small protein datasets and not full proteome?
by
dthorbur
★ 3.2k
If you're just using the tool for clustering purposes, I think OrthoFinder might be a little clunky and would recommend using something lik…
Comment: ID unifiying across different datasets
by
zizigolu
★ 4.4k
Thank you; The problem is let's say in the protein ID column I see `Q5VTE0;P68104;Q05639` here I am sure I should get which `ENSG` for eac…
Comment: How to improving 2-Nucleotide RNA-seq Mapping Accuracy
by
2411110159
• 0
Since we do not have real data yet, I tried to simulate this using strand-specific RNA bisulfite-seq reads (C to T). Read1 corresponds to t…
Comment: How to Use Biostars, Part-I: Questions, Answers, Comments and Replies
by
2411110159
• 0
Very helpful!
Comment: direct RNA long-reads alignment against reference genome
by
frarodmar17
• 0
Okay, thanks! I removed reads.fa and I used the index created with minimap2 in .mmi format. Is this correct?
Comment: Access to bulk FAST5 datasets
by
matt_arnold_bio
• 0
Just bumping this to see if anyone knows where I can download example **bulk** files (i.e. files containing metadata allowing simulated pla…
Answer: direct RNA long-reads alignment against reference genome
by
GenoMax
154k
> Can I align these reads against a reference genome directly? I Yes you can with the following pre-set as noted in `minimap2` quick guid…
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