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121,983 results • Page
635 of 2440
Sort: Rank
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Votes
Replies
7
votes
12
replies
3.0k
views
7 follow
Why do I lose sequences when converting my bam files into fastq?
fastq
bam
bamToFastq
updated 4.3 years ago by
swbarnes2
15k • written 4.3 years ago by
DNAngel
▴ 260
4
votes
2
replies
2.3k
views
Different peak sites from .xls and .narrowPeak, macs2 output
diffbind
atac-seq
macs2
chip-seq
callpeak
4.3 years ago by
sh.kazempour94
▴ 20
2
votes
7
replies
3.5k
views
6 follow
Load GSEA software results into R
GSEA
R
plot
updated 4.3 years ago by
Ram
45k • written 4.3 years ago by
ryme
▴ 30
0
votes
0
replies
1.4k
views
Job:
HIRING: Senior Software Developer- UC Santa Cruz Genomics Institute
software-developer
bioinformatics-engineer
genomics
updated 4.3 years ago by
Ram
45k • written 4.3 years ago by
genomicshr
▴ 30
0
votes
1
reply
2.4k
views
Biopython Align: making substitution matrix for global and local alignments
global
local
biopython
updated 4.3 years ago by
Joe
22k • written 4.3 years ago by
nyck33
▴ 10
0
votes
0
replies
678
views
Job:
HIRING: Sr Bioinformatician - UC Santa Cruz Genomics Institute
software-engineer
pathogen
genomics
updated 4.3 years ago by
Ram
45k • written 4.3 years ago by
genomicshr
▴ 30
0
votes
2
replies
2.6k
views
Conversion of SNP array data to PLINK format
SNP
plink
updated 4.3 years ago by
Dan
▴ 20 • written 5.1 years ago by
gitanjali.tandon
• 0
0
votes
1
reply
716
views
Strandedness of RNAseq data from SAM alignment flag
SAMflag
Strandanalysis
RNAseq
updated 4.3 years ago by
swbarnes2
15k • written 4.3 years ago by
rs.yousaf
• 0
0
votes
0
replies
859
views
COLOC.abf priors
COLOC
4.3 years ago by
Filago
▴ 110
0
votes
2
replies
1.0k
views
Ideas to represent RNA-seq expression profile (Z-scores) and the significance level at the same time
R
RNAseq
updated 4.3 years ago by
German.M.Demidov
★ 3.0k • written 4.3 years ago by
pixie@bioinfo
★ 1.5k
9
votes
13
replies
3.0k
views
mapped reads (m aligned) is higher for a subset sample?
salmon
fastqc
multiqc
RNA-seq
updated 4.3 years ago by
Kevin Blighe
89k • written 4.3 years ago by
Pratik
★ 1.1k
0
votes
1
reply
1.2k
views
How to find coefficients of all genes for prediction of risk score with some threshold using multivariate cox regression model in TCGA-LIHC dataset ?
cox
risk-score
survival-analysis
TCGA
written 4.3 years ago by
donnieDarko
• 0
0
votes
0
replies
759
views
Analysis of CRISPR screening with very strong positive selection
MAGeCK
CRISPR
4.3 years ago by
di4mond
• 0
0
votes
1
reply
1.7k
views
Build phylogenetic tree with alignment file
nwk
phylogenetic
aln
alignment
updated 4.3 years ago by
Michael
56k • written 4.3 years ago by
Jonathan Yoou
▴ 70
0
votes
0
replies
1.1k
views
Job:
PhD scholarship in bioinformatics in Rostock (Baltic Coast), Germany
aging
nutrition
updated 4.3 years ago by
Ram
45k • written 4.3 years ago by
Daniel Palmer
• 0
0
votes
1
reply
1.2k
views
How do I correctly add a plasmid sequence with multiple genes to a gtf as well as fasta file?
gtf
fasta
plasmid
updated 4.3 years ago by
Arsenal
▴ 160 • written 4.3 years ago by
a.wa
• 0
7
votes
4
replies
2.2k
views
Up to date bulk RNA-seq Quality Control tools?
QC
RNA-seq
4.3 years ago by
Pratik
★ 1.1k
0
votes
4
replies
1.3k
views
AWS EC2 connection with External hard drive (portable hard drive)
EC2
AWS
updated 4.3 years ago by
Ram
45k • written 4.3 years ago by
eunbi9561
• 0
0
votes
1
reply
1.2k
views
samtools mpileup: error CRC32 failure
sequencing
SNP
genome
next-gen
gene
updated 4.3 years ago by
Pierre Lindenbaum
166k • written 4.3 years ago by
lz1903
▴ 10
1
vote
1
reply
808
views
Finding if genes present in a gene list intersect genomic intervals
bed
encode
gene
3.9 years ago by
alexmondaini
▴ 20
0
votes
1
reply
2.1k
views
Packages installation: Permission denied
bioconductor
R
packages
updated 4.3 years ago by
zx8754
12k • written 4.3 years ago by
Zineb
▴ 10
1
vote
2
replies
910
views
Split a sam file by chromosome
CNVs
NGS
PRISM
updated 4.3 years ago by
GenoMax
154k • written 4.3 years ago by
ICfc97
▴ 20
4
votes
6
replies
2.8k
views
Trim bam file reads to the same length
RNA-Seq
genome
sequencing
next-gen
updated 4.3 years ago by
Juke34
9.3k • written 5.7 years ago by
rrapopor
▴ 40
0
votes
0
replies
783
views
Job:
Postdoc position on Modeling Gene Disruptions involved in Speech and Language Impairment in Human Neurons
transcriptomics
single
epigenetics
cell
4.3 years ago by
pancakeplant
▴ 10
1
vote
2
replies
2.6k
views
Salmon quant produced an error
Salmon
Linux
updated 21 months ago by
Muffin Man
▴ 10 • written 4.3 years ago by
Mohamed Samir
▴ 30
2
votes
1
reply
1.1k
views
effects of posttranslational protein modifications database?
post-translational-modification
protein
updated 13 months ago by
Ram
45k • written 4.4 years ago by
Camelia
▴ 30
0
votes
1
reply
1.6k
views
bcftools add AD column
ad
bcftools
vcf
updated 4.3 years ago by
zx8754
12k • written 4.3 years ago by
martina.gallinaro
• 0
1
vote
5
replies
2.5k
views
Trimmomatic: Unknown trimmer error
fastq
trimmomatic
RNA-seq
4.3 years ago by
foxiw
▴ 10
0
votes
0
replies
1.6k
views
Job:
Research Assistant in the Systems Environmental Microbiology Group at DTU Biosustain
engineering
Strain
4.3 years ago by
info
▴ 80
1
vote
1
reply
943
views
CNV in EPIC Illumina DNA methylation
bed
CNV
Conumee
updated 2.5 years ago by
Ram
45k • written 4.3 years ago by
NS
• 0
4
votes
4
replies
2.7k
views
awk, count and print the number of lines following a separator then add value of header to that column
awk
updated 4.3 years ago by
zx8754
12k • written 4.3 years ago by
Tash
▴ 20
1
vote
2
replies
1.7k
views
FastQC report of the metagenomic data
Metagenomics
Microbiome
WholeShotgunMetagenome
FastQC
Data-Analysis
4.3 years ago by
serene.s
• 0
0
votes
1
reply
958
views
copy number variation and aneuploidy
aneuploidy
number
copy
variation
updated 4.3 years ago by
German.M.Demidov
★ 3.0k • written 4.3 years ago by
GG
• 0
0
votes
4
replies
1.7k
views
Getting biological replicates from SRA run NCBI
fastq
AWS
SRA
RNAseq
18 months ago by
Andres
▴ 20
0
votes
1
reply
1.4k
views
Forum:
Opinions on SLAM-Seq for Differential Gene Analysis
DGE
RNA-Seq
htseq
updated 4.3 years ago by
dsull
★ 7.7k • written 4.3 years ago by
dk0319
▴ 70
1
vote
2
replies
1.7k
views
Basic questions about SPAdes, metaSPAdes
metaspades
4.3 years ago by
yingcraft
• 0
0
votes
3
replies
4.6k
views
Questions on ssGSEA
RNA-seq
gsva
ssGSEA
alignment
updated 4.3 years ago by
Brian Gudenas
▴ 90 • written 4.3 years ago by
emi
▴ 80
0
votes
1
reply
719
views
.bam .sam paired or unique aligment
aligment
sam
bam
updated 2.6 years ago by
Ram
45k • written 4.3 years ago by
Roberto Damian
• 0
6
votes
3
replies
1.5k
views
Tool for Protein Alignment/Superimposition
protein
superimposition
alignment
4.3 years ago by
antoniaa
▴ 30
1
vote
3
replies
1.3k
views
Cannot great a gene by gene matrix in Rstudio
gene
matrix
updated 2.9 years ago by
Ram
45k • written 4.3 years ago by
Bioman
• 0
6
votes
10
replies
2.3k
views
what does very low estimates but a significant P value mean.
coefficients
pvalue
regression
updated 4.3 years ago by
Papyrus
★ 3.1k • written 4.3 years ago by
ritz
▴ 10
1
vote
1
reply
1.4k
views
How can I compare the similarities of two transcriptomes?
transcriptome
similarity
rnaseq
updated 4.3 years ago by
Pratik
★ 1.1k • written 4.3 years ago by
avelarbio46
▴ 30
4
votes
6
replies
8.4k
views
calculate ti/tv ratio in WGS data
sequencing
ti/tv ratio
updated 4.3 years ago by
davidc
• 0 • written 7.4 years ago by
chengyi31000
▴ 10
0
votes
1
reply
869
views
what is the length of sliding window in trimming options how to get it
fastq
fasta
SRA
updated 2.6 years ago by
Ram
45k • written 4.3 years ago by
FadyNabil
▴ 20
1
vote
1
reply
2.6k
views
RNA-seq gene list - HOMER Gene based analysis
RNA-Seq
homer
updated 4.3 years ago by
bkleiboeker
▴ 370 • written 8.2 years ago by
G.Car
▴ 20
3
votes
4
replies
1.9k
views
Duplicate ID error with update-name flag
Chromosome
SNP
position
Plink
unix
rsid
updated 4.3 years ago by
zx8754
12k • written 4.3 years ago by
geno89
▴ 20
0
votes
1
reply
1.2k
views
Generating multiple species consensus alignments for tree topology tests
bcftools
alignment
fasta
iqtree
vcf
updated 4.3 years ago by
Arsenal
▴ 160 • written 4.3 years ago by
mglasena
▴ 40
1
vote
8
replies
2.1k
views
How to map rsIDs to KEGG variant Ids
dbsnp
kegg
rsid
4.3 years ago by
david.f.stein
▴ 10
0
votes
1
reply
1.0k
views
blastn cut off values
blast
updated 4.3 years ago by
Arsenal
▴ 160 • written 4.3 years ago by
Wilber0x
▴ 50
2
votes
1
reply
5.5k
views
vcftools and SnpSift give different values for Ts/Tv ratio
variant
SNP
vcf
transversion
transition
updated 3.9 years ago by
Ram
45k • written 10.7 years ago by
ethan.kaufman
▴ 380
121,983 results • Page
635 of 2440
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