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122,198 results • Page 636 of 2444
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Job: Coral Bioinformatics Postdoc at Hawaii Institute of Marine Biology
Climate_Change Coral Selective_Breeding
updated 4.4 years ago by 45k • written 4.4 years ago by ▴ 10
12
votes
3
replies
3.9k
views
Choosing the right pathways among gene set enrichment analysis results
GSEA
updated 4.4 years ago by 22k • written 4.4 years ago by ▴ 30
0
votes
0
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1.5k
views
Issues with BRAKER2 (v.2.1.6)--not producing "genemark_hintsfile.gff.prot.tmp"
annotation
updated 4.4 years ago by 45k • written 4.4 years ago by • 0
1
vote
10
replies
3.4k
views
Problem with this error: EXITING because of INPUT ERROR: the file format of the genomeFastaFile
RNA-seq alignment STAR
updated 4.4 years ago by 45k • written 4.4 years ago by ▴ 10
1
vote
8
replies
2.8k
views
IPA Core Analysis
RNA-Seq
4.4 years ago by Francois Piumi ▴ 70
15
votes
8
replies
9.2k
views
6 follow
GATK BaseRecalibrator known-sites vcf file
gnomad baserecalibrator gatk
updated 2.3 years ago by ▴ 110 • written 4.4 years ago by ▴ 60
6
votes
8
replies
11k
views
How to create a signature matrix based on a given single cell RNA-seq data
Cibersort DWLS MAST signature-matrix single-cell-RNAseq
updated 4.4 years ago by ★ 19k • written 4.4 years ago by ▴ 20
0
votes
0
replies
857
views
News: Online training - Phylogenomics
Phylogenomics
4.4 years ago by Physalia-courses ★ 2.7k
3
votes
1
reply
2.9k
views
Illumina paired end fastq sequence identifiers and index primers
fastq primers identifiers Illumina
updated 4.4 years ago by 154k • written 4.4 years ago by ▴ 20
4
votes
13
replies
3.4k
views
bcftools mpileup sample labels, seg fault
bcftools mpileup
4.4 years ago by Gregor Rot ▴ 550
0
votes
0
replies
817
views
Calculating Distance Matrix
Absence Matrix Presence Gene Distance
updated 4.4 years ago by 35k • written 4.4 years ago by • 0
0
votes
0
replies
1.0k
views
Appropriate tool to deconvolute complex Sanger chromatograms in order to retrieve specific DNA barcodes
sequencing NGS sanger deconvolution clontracer clonality
4.4 years ago by l.beumers • 0
7
votes
5
replies
2.6k
views
Is there a way to extract alignment score from STAR aligner bam files?
rnaseq
4.4 years ago by simplitia ▴ 130
8
votes
3
replies
1.8k
views
3D protein structure prediction
3D-protein-structure
updated 4.4 years ago by ▴ 390 • written 4.4 years ago by ▴ 20
9
votes
4
replies
1.8k
views
Locating a single cell data set
scRNA-seq
updated 4.4 years ago by 7.6k • written 4.4 years ago by ★ 4.4k
0
votes
0
replies
1.5k
views
Tutorial: Event & tutorial: open software tools and AI for improving bioimaging (SLURM, containerisation)
containerisation bioimaging SLURM health
4.4 years ago by Erin Haskell ▴ 470
0
votes
0
replies
1.2k
views
Programmatically adding hydrogen and remove water to multiple PDB files
docking pdb python structure
4.4 years ago by gundalav ▴ 380
0
votes
0
replies
767
views
PC loading plot
SNP PCA plink
updated 4.4 years ago by 90k • written 4.4 years ago by ▴ 10
1
vote
0
replies
636
views
DESeq2: One or more designs for contrasts of interest
DESeq2 design contrasts
4.4 years ago by Mirin1357 ▴ 10
1
vote
0
replies
1.9k
views
Tutorial: Slurm and parallelization
slurm
4.4 years ago by Juke34 9.3k
4
votes
7
replies
2.6k
views
Mask a SNP before imputation
genotype bcftools impute2 mask VCF
4.2 years ago by raalsuwaidi ▴ 110
1
vote
4
replies
3.7k
views
Problem with Deseq2
galaxy Deseq2 sequencing RNA-seq
updated 4.4 years ago by ★ 1.3k • written 4.4 years ago by ▴ 60
2
votes
7
replies
4.4k
views
Differential Gene expression between low survival and high survival samples from RNAseq
rna-seq R DEG Survival
updated 4.4 years ago by • 0 • written 7.7 years ago by ▴ 70
1
vote
4
replies
3.3k
views
Install R package fgsea: Error in download.file
bioconductor R package fgsea
updated 4.4 years ago by 90k • written 4.5 years ago by ▴ 250
0
votes
1
reply
841
views
Use part of the name of the input file in the Snakemake
snakemake
updated 4.4 years ago by 21k • written 4.4 years ago by ▴ 100
0
votes
0
replies
898
views
Job: Postgraduate Scholarship in Bioinformatics and Liver Cancer Genomics
NGS Cancer_genomics scRNA-seq Single-cell_sequencing Liquid_biopsy
4.4 years ago by waihungh ▴ 20
0
votes
1
reply
728
views
Chimpanzee genome for APE113 and APE114
Chimpanzee APE113
updated 4.4 years ago by 16k • written 4.4 years ago by • 0
0
votes
3
replies
1.8k
views
Using Linear Regression on Genotype and Expression data
Regression SNP Machine Learning Genotype
updated 4.4 years ago by ▴ 110 • written 4.5 years ago by ▴ 30
2
votes
3
replies
1.7k
views
what is the corelation between Elastic net method and GAIA method?
genes prediction
updated 4.4 years ago by ★ 90k • written 4.4 years ago by ▴ 260
1
vote
2
replies
2.0k
views
Getting peak (bed narrowPeak) from signals (Wig)
data ChIP-seq analysis
4.4 years ago by arsala521 ▴ 60
0
votes
1
reply
1.0k
views
Supernova 10X Genomics - estimation of gap length
gap_length_estimation 10X_Genomics genome_assembly Supernova_assembler
4.4 years ago by MH85 ▴ 20
0
votes
0
replies
805
views
Error: SLAC of HyPhy tool Galaxy.org
hyphy galaxy slac
4.4 years ago by frk • 0
0
votes
0
replies
809
views
Minimum size of input genes list and number of samples for fgsea
gsea fgsea
4.4 years ago by confused but trying • 0
0
votes
4
replies
1.4k
views
PRIDE ENSEMBL
ensembl peptides pride
4.4 years ago by desptsp • 0
0
votes
5
replies
1.5k
views
Data visualisation, miRNA and mRNA network with pair data
mirna R network mrna
updated 4.4 years ago by 11k • written 4.4 years ago by • 0
4
votes
2
replies
2.4k
views
You can't just liftover from one build to another using only coordinates correct?
liftover
updated 4.4 years ago by ▴ 10 • written 4.9 years ago by ▴ 900
0
votes
0
replies
1.7k
views
Job: Product Manager for Online Bioinformatics Resources
product-manager
updated 4.4 years ago by 45k • written 4.4 years ago by ▴ 90
2
votes
1
reply
878
views
Gradient Descent for gene degradation
linearRegression gradientdescent R degradation scRNA
updated 4.4 years ago by 36k • written 4.4 years ago by ▴ 20
3
votes
10
replies
2.6k
views
how to delete a file 3 months after downloading it in python
python pandas
updated 3.5 years ago by 90k • written 4.4 years ago by ▴ 20
1
vote
1
reply
830
views
Control-FREEC significance
Control-FREEC KolmogorovSmirnov CNVs significance Wilcoxon
updated 4.4 years ago by ★ 3.0k • written 4.4 years ago by ▴ 40
2
votes
2
replies
1.5k
views
What is the general philosophy of softwares for searching mutations ?
software mutations bacteria genome archaea
4.4 years ago by Student ▴ 30
4
votes
3
replies
1.8k
views
Interpretation of reads
interpretation scRNA-seq RNA-seq count-matrix amplification
updated 4.4 years ago by ★ 7.8k • written 4.4 years ago by ▴ 20
0
votes
1
reply
1.3k
views
Duplicate ID in plink
GWAS plink
updated 4.4 years ago by 2.9k • written 4.4 years ago by ▴ 50
0
votes
3
replies
3.0k
views
Velocyto: Not found cell and umi barcode in entry of the bam file
velocyto scRNA-seq UMI RNA
4.4 years ago by bs58 ▴ 10
0
votes
0
replies
1.8k
views
What is Lfq intensity?
Proteomic
4.4 years ago by Lital • 0
1
vote
2
replies
2.7k
views
LOW BUSCO Score for De novo genome assembly
illumina genome assembly reads rna-seq
updated 4.4 years ago by ▴ 640 • written 4.4 years ago by ▴ 160
0
votes
2
replies
2.7k
views
hg38 coordinates for centromeric, subtelomeric and telomeric regions
hg38
4.4 years ago by masaver ▴ 20
0
votes
2
replies
1.2k
views
Where I can download o/e scores in gnomad files?
gnomad pLI oe
4.4 years ago by stb1132 • 0
0
votes
0
replies
907
views
Job: Data stewardship Community Manager
stewardship Data data management
4.4 years ago by Erin Haskell ▴ 470
0
votes
0
replies
854
views
Job: Data Stewardship - Trainer and course developer (two positions)
stewardship data training Data management
4.4 years ago by Erin Haskell ▴ 470
122,198 results • Page 636 of 2444
Recent Votes
Answer: Can i use orthofinder for small protein datasets and not full proteome?
Comment: Comparison of different RNAseq data sets
Comment: ID unifiying across different datasets
Comment: ID unifiying across different datasets
Comment: snpEff: Unsupported structural variant types
Answer: snpEff: Unsupported structural variant types
Answer: Can i use orthofinder for small protein datasets and not full proteome?
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Comment: ID unifiying across different datasets by GenoMax 154k
In this case the entry notes that this is likely the product of a pseudogene: https://www.uniprot.org/uniprotkb/Q5VTE0/entry and existence …
Comment: Comparison of different RNAseq data sets by DrSmad ▴ 10
Each lab contributes both control and LPS. Example, for cell line A_lab1 did and analysis on control and LPS-6h. Cell line B_lab2 did contr…
Comment: ID unifiying across different datasets by zizigolu ★ 4.4k
sorry, why some gene names are often lacking though the Uniprot ID is still valid (using biomart)?
Comment: snpEff: Unsupported structural variant types by shpak.max ▴ 70
Unfortunately, while it ran without a problem initially, when I checked the run screen today, I saw the following error message (and unlike…
Comment: ID unifiying across different datasets by GenoMax 154k
You can use the [**ID mapping tool**][1] from UniProt site (third ID did not map from the list above): From To P68104 ENSG0000015…
Answer: The geo samples is not having sentrix id and sentrix position. But this informat by yura.grabovska ▴ 890
Crosspost from related question: https://www.biostars.org/p/9616466/#9616534 ``` ##Using R, illuminaio from Bioconductor library(…
Answer: Finding Sentrix ID in HM450K arrays by yura.grabovska ▴ 890
``` ##Using R, illuminaio from Bioconductor library(illuminaio) temp.idat <- readIDAT(file = "200379120087_R02C02_Grn.idat") tem…
Comment: Can i use orthofinder for small protein datasets and not full proteome? by michael.ante ★ 4.0k
Do you want to compare them by sequence or by function? For the later, you can use e.g. InterProScan, KoFamScan.
Answer: Can i use orthofinder for small protein datasets and not full proteome? by dthorbur ★ 3.2k
If you're just using the tool for clustering purposes, I think OrthoFinder might be a little clunky and would recommend using something lik…
Comment: ID unifiying across different datasets by zizigolu ★ 4.4k
Thank you; The problem is let's say in the protein ID column I see `Q5VTE0;P68104;Q05639` here I am sure I should get which `ENSG` for eac…
Comment: How to improving 2-Nucleotide RNA-seq Mapping Accuracy by 2411110159 • 0
Since we do not have real data yet, I tried to simulate this using strand-specific RNA bisulfite-seq reads (C to T). Read1 corresponds to t…
Comment: How to Use Biostars, Part-I: Questions, Answers, Comments and Replies by 2411110159 • 0
Very helpful!
Comment: direct RNA long-reads alignment against reference genome by frarodmar17 • 0
Okay, thanks! I removed reads.fa and I used the index created with minimap2 in .mmi format. Is this correct?
Comment: Access to bulk FAST5 datasets by matt_arnold_bio • 0
Just bumping this to see if anyone knows where I can download example **bulk** files (i.e. files containing metadata allowing simulated pla…
Answer: direct RNA long-reads alignment against reference genome by GenoMax 154k
> Can I align these reads against a reference genome directly? I Yes you can with the following pre-set as noted in `minimap2` quick guid…
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