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121,981 results • Page 637 of 2440
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3
votes
5
replies
1.6k
views
Identifying introns
RNA-Seq
updated 4.3 years ago by 45k • written 4.3 years ago by ▴ 70
0
votes
0
replies
446
views
Binding site mutation
RDRP NSP12
4.3 years ago by Mohamed Elsherbieny • 0
0
votes
1
reply
1.3k
views
GDC Client 500 Server Error
TCGA GDC error GDC-client server
updated 4.3 years ago by 89k • written 4.3 years ago by ▴ 10
0
votes
4
replies
1.9k
views
Make doesn't work for Allpaths LG
allpaths error make lg
4.3 years ago by cybercat • 0
6
votes
6
replies
8.6k
views
6 follow
ClusterProfiler-cnetplot output to Cytoscape?
pathway clusterprofiler
updated 4.2 years ago by • 0 • written 9.0 years ago by ▴ 10
0
votes
0
replies
750
views
Different no of 'unknown/class u' transcripts in merged.gtf and final.gtf files
Cufflinks StringTie GffCompare RNA-Seq
4.3 years ago by SKY ▴ 60
0
votes
1
reply
9.2k
views
Difference between "Original tree" and "Bootstrap consensus tree" in Mega X software for phylogeny
Mega Phylogeny
updated 4.3 years ago by • 0 • written 4.9 years ago by ★ 1.4k
3
votes
3
replies
3.2k
views
How to connect HLA alleles with rsID?
rsid
updated 4.3 years ago by • 0 • written 4.5 years ago by ▴ 380
4
votes
5
replies
2.9k
views
Command to parse mummer coords file
mummer nucmer
updated 4.3 years ago by ▴ 20 • written 5.9 years ago by ▴ 80
0
votes
7
replies
3.2k
views
Malformed BED entry at line 5. Start Coordinate detected that is < 0. Exiting.
unibind BED
updated 4.3 years ago by 21k • written 4.3 years ago by • 0
5
votes
7
replies
4.8k
views
Converting LogCPM to raw counts for DESEQ2
rna-seq
updated 20 months ago by ★ 8.3k • written 4.3 years ago by ▴ 70
0
votes
0
replies
567
views
Realign previous alignments
mafft alignment
4.3 years ago by QLFblaireau ▴ 30
1
vote
8
replies
2.0k
views
Unexpected blastx results
blast blastx
3.9 years ago by langziv ▴ 70
1
vote
1
reply
1.5k
views
Filtering out relevant Gene-fusions
Gene fusion filtering
updated 4.3 years ago by 5.9k • written 4.3 years ago by ▴ 30
0
votes
0
replies
1.2k
views
Hi-C merged files
Hi-C .hic
4.3 years ago by Oleczkaff • 0
1
vote
15
replies
5.5k
views
bcftools filter by protein prediction
bcftools
updated 4.3 years ago by ▴ 480 • written 4.3 years ago by ▴ 30
19
votes
6
replies
18k
views
6 follow
How to trim Nanopore reads. Please suggest a tool.
Nanopore MinIONQC ONT
updated 4.3 years ago by 48k • written 5.7 years ago by ▴ 80
0
votes
1
reply
736
views
Screening for high-impact mutations from WES-based variant calling and annotation
Variant screening
updated 4.3 years ago by 166k • written 4.3 years ago by ▴ 30
3
votes
6
replies
2.4k
views
genome assembly - size of gaps
PBJelly assembly_genome linked_reads gaps
updated 4.3 years ago by 16k • written 4.3 years ago by ▴ 20
0
votes
7
replies
2.1k
views
Counting reads with feature counts.
Genomics
4.3 years ago by aranyak111 • 0
1
vote
4
replies
1.4k
views
common coordinates from 10 files
coordinates common
4.3 years ago by K ▴ 10
0
votes
2
replies
1.7k
views
readFilesCommand not working
readFilesCommand rnaseq STAR
4.3 years ago by vinishavvenugopal ▴ 30
0
votes
1
reply
853
views
How to calculate Oncotype score and Mammaprint score from an RNAseq
Manmaprint Oncotype
updated 4.3 years ago by 45k • written 4.3 years ago by • 0
1
vote
4
replies
2.9k
views
Gene expression RNASeq
DESEQ2 RNAseq
updated 4.3 years ago by ★ 3.1k • written 4.3 years ago by ▴ 30
3
votes
7
replies
2.5k
views
Clarification regarding VCF fields (file format)
mutation VCF SNPs format
updated 4.3 years ago by ▴ 160 • written 4.3 years ago by 7.6k
4
votes
3
replies
2.3k
views
Job: Senior Bioinformatics Scientist
Senior-Scientist Geltor
updated 4.3 years ago by 45k • written 4.3 years ago by ▴ 10
0
votes
4
replies
3.6k
views
Convert MSTRG gene IDs to real one?
Gene MSTRG Stringtie
updated 4.3 years ago by 15k • written 4.3 years ago by • 0
2
votes
2
replies
1.1k
views
Does spades/metaspades normally having missing nodes?
metaspades spades
4.3 years ago by DNAngel ▴ 260
2
votes
9
replies
3.7k
views
RNAseq: units (TPM +0.001).
TPM ARNseq
updated 3.2 years ago by ★ 1.2k • written 4.3 years ago by • 0
0
votes
5
replies
4.0k
views
retrieve_pdb_file from Bio.PDB.PDBList creates .ent files, not .pdb
biopython bio.pdb pyrosetta PDBList rmsd
updated 4.3 years ago by ★ 30k • written 4.3 years ago by • 0
5
votes
0
replies
1.0k
views
Herald: The Biostar Herald for Tuesday, June 08, 2021
herald
updated 4.3 years ago by 103k • written 4.3 years ago by 3.6k
8
votes
8
replies
2.6k
views
Find genes overlapping intervals in R and keep the original Intervals
bedtools annotations R genes
updated 4.3 years ago by 45k • written 4.3 years ago by ▴ 40
1
vote
5
replies
2.5k
views
allele frequency from different read depths
allele depth frequency vcf read
updated 4.3 years ago by ▴ 430 • written 4.3 years ago by ▴ 90
0
votes
2
replies
1.2k
views
Building a phylogenetic tree from different ortholog groups
COGs phylogenetics msa
4.3 years ago by timothy.kirkwood ▴ 140
0
votes
6
replies
1.8k
views
Query regarding Differentially Expressed Genes Network analysis.
Network Analysis STRING
updated 4.3 years ago by 45k • written 4.3 years ago by • 0
0
votes
0
replies
1.0k
views
Read trimming in BS-Seq
Methylation BS-Seq Bismark WGBS
4.3 years ago by Arindam Ghosh ▴ 550
0
votes
0
replies
933
views
Lastz output interpretation - only entries from positive strand
genome pairwise alignment lastz
4.3 years ago by manaswwm ▴ 570
0
votes
5
replies
2.1k
views
segfault in ADMIXTURE
software error
updated 4.3 years ago by ▴ 820 • written 4.6 years ago by • 0
0
votes
0
replies
642
views
GPSPROT image/network download with script
GPSPROT
4.3 years ago by Shicheng Guo ★ 9.6k
2
votes
4
replies
1.9k
views
Merge replicate fastq files of the same sample together?
fastq RNA-seq
4.3 years ago by foxiw ▴ 10
0
votes
3
replies
1.3k
views
Can you predict the size of a BAM file based on the fasta?
storage mapping bam
updated 4.3 years ago by 89k • written 4.3 years ago by ▴ 130
0
votes
0
replies
1.2k
views
Calculate distances from multi fasta alignment considering ambiguous bases as different
distances msa python unix
4.3 years ago by Gon ▴ 10
4
votes
3
replies
3.1k
views
How to create a subset from a Nanopore fast5 file?
nanopore fast5 ont
4.3 years ago by shelkmike ★ 1.8k
0
votes
0
replies
973
views
extract transcripts with particular class code in Cuff/GffCompare
GffCompare Class CuffCompare code RNA-Seq
4.3 years ago by SKY ▴ 60
5
votes
3
replies
3.7k
views
Purpose of bamCoverage RPKM normalization method
rpkm bamCoverage
updated 4.3 years ago by 89k • written 4.3 years ago by ▴ 390
7
votes
3
replies
5.6k
views
error bowtie2-align exited with value 134
fastq bowtie2
updated 4.3 years ago by 89k • written 4.3 years ago by ★ 1.3k
1
vote
1
reply
957
views
problem with contrastive principal component analysis (cPCA)
scPCA cPCA
updated 4.3 years ago by 89k • written 4.3 years ago by ▴ 260
0
votes
0
replies
763
views
Map BED12 file exon coordinates between species using UCSC liftOver
software problem liftOver
4.3 years ago by celebiration8 ▴ 10
0
votes
2
replies
1.0k
views
RNA-Microarray-Data-Analysis
Microarray Expression
updated 4.3 years ago by ▴ 880 • written 4.3 years ago by ▴ 40
0
votes
3
replies
1.2k
views
adding gene symbol to bed file
gene-symbol bed
updated 2.5 years ago by 45k • written 4.3 years ago by ▴ 40
121,981 results • Page 637 of 2440
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Is this an appropriate command for estimating contaminatin in a germline WGS sample using GATK?
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Answer: When to merge RNA-seq files with multiple sequencing lanes
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Should be noted that the gtf/gff and genomic.fna files for HIV only contain CDS annotations of the 9 ORFs and not the full transcripts. Onl…
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