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122,198 results • Page 638 of 2444
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640
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When to use Pharmacophore and QSAR, in which conditions.
design Drug
4.4 years ago by Sachidanand • 0
38
votes
8
replies
56k
views
11 follow
Adding Read Groups To Bam Files
bam gatk samtools bwa
updated 4.4 years ago by 12k • written 13.4 years ago by 12k
1
vote
8
replies
2.1k
views
Seqff.r script is giving error while running
R
4.4 years ago by smrutimayipanda ▴ 20
1
vote
1
reply
3.8k
views
Interpret Clustal Omega Distance/Percent Identity Output for Multiple Proteins
Omega Clustal similarity sequence
updated 4.4 years ago by ★ 30k • written 4.5 years ago by ▴ 50
0
votes
0
replies
638
views
Detecting genetic mutation with raw data
mutation Krt1 genetic hyperkeratosis krt10
4.4 years ago by Amanda • 0
4
votes
5
replies
1.6k
views
Are there any statistical method is suitable to solve
z-test
updated 3.0 years ago by 45k • written 4.4 years ago by ▴ 120
2
votes
4
replies
45k
views
python 3.8 'No module named pip'
rna-seq
updated 4.5 years ago by ▴ 10 • written 5.4 years ago by • 0
0
votes
1
reply
982
views
Downloading bacterial reference genome
reference genome
updated 4.5 years ago by 8.7k • written 4.5 years ago by • 0
0
votes
1
reply
988
views
Where to get the human mitochondiral reference genome?
GTF human genome mitochondiral
updated 4.4 years ago by 154k • written 4.5 years ago by ▴ 80
2
votes
4
replies
1.4k
views
Advantages of split by chromosome?
cnv split gatk
updated 4.4 years ago by 166k • written 4.5 years ago by ▴ 20
5
votes
4
replies
3.5k
views
distance matrix as input in R clustering functions ?
k-medioids-genetic-distances-mash R Clustering
updated 4.4 years ago by 27k • written 4.5 years ago by ▴ 140
0
votes
0
replies
628
views
missing calls for a vcf file
SNP
4.5 years ago by evafinegan • 0
5
votes
7
replies
3.1k
views
How to find the functions of Reactome pathways?
Pathways reactome pathways DAVID
updated 4.5 years ago by ▴ 590 • written 7.5 years ago by ▴ 260
0
votes
0
replies
779
views
ANOVA testing
R ANOVA p-values
4.5 years ago by ehruan ▴ 10
1
vote
1
reply
1.6k
views
Plink error: Variant names are limited to 16000 characters.
plink imputation
updated 4.4 years ago by 12k • written 4.5 years ago by ▴ 10
1
vote
5
replies
3.1k
views
Job: Computational Biologist position at the University of Alabama at Birmingham
UAB Transcriptomics Computational
updated 4.4 years ago by 45k • written 4.6 years ago by ▴ 20
0
votes
3
replies
2.6k
views
Job: Statistical Bioinformatics Laboratory Head, WEHI, Melbourne, Australia
Australia
updated 2.5 years ago by 45k • written 4.6 years ago by ★ 8.6k
4
votes
9
replies
2.8k
views
randomly sampling long read data for genome assembly
pacbio assembly genome
4.4 years ago by jleehan ▴ 120
3
votes
8
replies
4.2k
views
Correlation plot
Correlation R corrplot
updated 4.4 years ago by ▴ 160 • written 4.5 years ago by ▴ 180
3
votes
5
replies
1.3k
views
6 follow
What genes are mutated in Lukemia?
Lukemia
updated 4.5 years ago by 11k • written 4.5 years ago by • 0
2
votes
4
replies
4.6k
views
TCGA Sample barcode
Tumor Barcode Normal TCGA
updated 4.5 years ago by 6.1k • written 4.5 years ago by ▴ 60
0
votes
1
reply
768
views
combine metagenomic assemblies using cat?
Assembly
updated 4.5 years ago by 3.9k • written 4.5 years ago by ▴ 60
0
votes
5
replies
1.3k
views
Find sequence/variants from ancient-DNA genomes
DNA ancient
updated 4.5 years ago by 2.9k • written 4.5 years ago by • 0
4
votes
12
replies
2.9k
views
Multifactor Design For RNA-seq Analysis
Rna-seq batch correction DESeq2 multifactor
4.4 years ago by David Martínez ▴ 10
2
votes
2
replies
1.2k
views
Best hit from BLAST for a particular genomic region
genomic blast region best hit evalue
updated 4.5 years ago by 36k • written 4.5 years ago by ▴ 20
3
votes
4
replies
2.2k
views
Proportion of RNAseq reads mapping to rRNA, tRNA, mRNA, and intergenic or antisense regions of the genome?
GTF featureCounts NGS GFF
updated 4.5 years ago by 22k • written 4.5 years ago by ▴ 80
12
votes
9
replies
8.0k
views
Good annotation databases for a VCF file (somatic variants)
VCF ANNOVAR somatic databases annotation
updated 4.4 years ago by ▴ 130 • written 4.5 years ago by ▴ 110
8
votes
9
replies
2.5k
views
superimpose
discovery ds visualizer
4.5 years ago by Alex ▴ 20
0
votes
2
replies
1.1k
views
X-transposed region on chromosome Y
chromosome-X CNV
updated 2.9 years ago by 45k • written 4.5 years ago by • 0
0
votes
0
replies
683
views
How to run PWM scan with hundreds of PWM at the same time?
PWMScan ATAC-seq PWMtools
4.5 years ago by juanpjlozano • 0
0
votes
7
replies
2.1k
views
How to increase the number of matched sequences in blastn
mismatch blastn
updated 4.4 years ago by ★ 2.9k • written 4.5 years ago by • 0
1
vote
6
replies
2.2k
views
Unable to update Rstudio
updateR
updated 4.5 years ago by 90k • written 4.5 years ago by • 0
0
votes
0
replies
1.7k
views
HOMER annotatepeaks.pl
ChIP-Seq HOMER sequencing next-gen
4.5 years ago by jjp55 ▴ 20
3
votes
4
replies
2.7k
views
6 follow
Segmentation fault in bcftools while changing the sample names
vcftools bcftools
updated 4.5 years ago by 154k • written 4.7 years ago by ▴ 340
3
votes
6
replies
2.0k
views
Convert sam file with no header to fastq
fastq sam gatk
updated 4.5 years ago by 90k • written 4.5 years ago by ▴ 80
2
votes
3
replies
1.3k
views
Splice site impact
sites Splice
updated 4.5 years ago by 24k • written 4.5 years ago by • 0
0
votes
3
replies
1.4k
views
mapping with bfast killed when created index
bfast mapping index
updated 4.5 years ago by 13k • written 4.5 years ago by ★ 1.3k
0
votes
1
reply
1.2k
views
How to view large PPI network in STRING database?
PPI large network STRING
updated 4.5 years ago by 27k • written 4.5 years ago by ▴ 80
6
votes
12
replies
5.5k
views
Trim bam file reads to remove all nucleotide over a certain length
bam trimming
updated 4.5 years ago by 154k • written 4.5 years ago by 9.3k
47
votes
22
replies
39k
views
17 follow
Multi-Sample Vcf To Phylogenetic Tree.
vcf
updated 18 months ago by • 0 • written 12.1 years ago by ★ 5.4k
1
vote
2
replies
1.9k
views
bcftools filter
filter bcftools
4.5 years ago by Gregor Rot ▴ 550
0
votes
2
replies
1.7k
views
A USER ERROR has occurred: Bad input: the IUPAC sample specified is not present in the provided VCF file
GATK IUPAC CONSENSUS VCF FastaAlternateReferenceMaker
4.5 years ago by Vanuhi • 0
0
votes
0
replies
649
views
Motif search in protein list
interactome motif search batch
4.5 years ago by florian.roehrig • 0
3
votes
5
replies
2.7k
views
STAR Genome index could not open genomeFastaFile
RNAseq genome alignment STAR
4.4 years ago by bs58 ▴ 10
14
votes
4
replies
4.3k
views
Exclusion Of Regions In Cnv Analysis
plink
updated 3.2 years ago by 45k • written 13.4 years ago by ▴ 60
2
votes
7
replies
1.9k
views
Count the numfer of reads supporting a pattern from a BAM file
samtools
updated 4.5 years ago by ★ 1.3k • written 4.5 years ago by ▴ 750
11
votes
2
replies
7.2k
views
OrthoFinder: Diamond or Blast? Which is better?
orthofinder blast sensitivity ortholog
updated 3.7 years ago by ★ 2.9k • written 4.5 years ago by ▴ 190
2
votes
4
replies
2.3k
views
Bray Curtis for functional dissimilarity
dissimilarity bray curtis
updated 4.5 years ago by ★ 90k • written 4.5 years ago by • 0
0
votes
0
replies
733
views
how to use circos plot to plot euchromation and heterochromatin
perl circos plot
4.5 years ago by szp770 ▴ 10
0
votes
0
replies
657
views
Annotations for ReadDepth
CNVs NGS ReadDepth
4.5 years ago by ICfc97 ▴ 20
122,198 results • Page 638 of 2444
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Answer: Can i use orthofinder for small protein datasets and not full proteome?
Comment: Comparison of different RNAseq data sets
Comment: ID unifiying across different datasets
Comment: ID unifiying across different datasets
Comment: snpEff: Unsupported structural variant types
Answer: snpEff: Unsupported structural variant types
Answer: Can i use orthofinder for small protein datasets and not full proteome?
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Comment: ID unifiying across different datasets by GenoMax 154k
In this case the entry notes that this is likely the product of a pseudogene: https://www.uniprot.org/uniprotkb/Q5VTE0/entry and existence …
Comment: Comparison of different RNAseq data sets by DrSmad ▴ 10
Each lab contributes both control and LPS. Example, for cell line A_lab1 did and analysis on control and LPS-6h. Cell line B_lab2 did contr…
Comment: ID unifiying across different datasets by zizigolu ★ 4.4k
sorry, why some gene names are often lacking though the Uniprot ID is still valid (using biomart)?
Comment: snpEff: Unsupported structural variant types by shpak.max ▴ 70
Unfortunately, while it ran without a problem initially, when I checked the run screen today, I saw the following error message (and unlike…
Comment: ID unifiying across different datasets by GenoMax 154k
You can use the [**ID mapping tool**][1] from UniProt site (third ID did not map from the list above): From To P68104 ENSG0000015…
Answer: The geo samples is not having sentrix id and sentrix position. But this informat by yura.grabovska ▴ 890
Crosspost from related question: https://www.biostars.org/p/9616466/#9616534 ``` ##Using R, illuminaio from Bioconductor library(…
Answer: Finding Sentrix ID in HM450K arrays by yura.grabovska ▴ 890
``` ##Using R, illuminaio from Bioconductor library(illuminaio) temp.idat <- readIDAT(file = "200379120087_R02C02_Grn.idat") tem…
Comment: Can i use orthofinder for small protein datasets and not full proteome? by michael.ante ★ 4.0k
Do you want to compare them by sequence or by function? For the later, you can use e.g. InterProScan, KoFamScan.
Answer: Can i use orthofinder for small protein datasets and not full proteome? by dthorbur ★ 3.2k
If you're just using the tool for clustering purposes, I think OrthoFinder might be a little clunky and would recommend using something lik…
Comment: ID unifiying across different datasets by zizigolu ★ 4.4k
Thank you; The problem is let's say in the protein ID column I see `Q5VTE0;P68104;Q05639` here I am sure I should get which `ENSG` for eac…
Comment: How to improving 2-Nucleotide RNA-seq Mapping Accuracy by 2411110159 • 0
Since we do not have real data yet, I tried to simulate this using strand-specific RNA bisulfite-seq reads (C to T). Read1 corresponds to t…
Comment: How to Use Biostars, Part-I: Questions, Answers, Comments and Replies by 2411110159 • 0
Very helpful!
Comment: direct RNA long-reads alignment against reference genome by frarodmar17 • 0
Okay, thanks! I removed reads.fa and I used the index created with minimap2 in .mmi format. Is this correct?
Comment: Access to bulk FAST5 datasets by matt_arnold_bio • 0
Just bumping this to see if anyone knows where I can download example **bulk** files (i.e. files containing metadata allowing simulated pla…
Answer: direct RNA long-reads alignment against reference genome by GenoMax 154k
> Can I align these reads against a reference genome directly? I Yes you can with the following pre-set as noted in `minimap2` quick guid…
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