Limit : all time
all time today this week this month this year
121,907 results • Page 638 of 2439
Sort: Rank
Rank Views Votes Replies
0
votes
0
replies
892
views
How to change various SNP identifiers into rsID in Plink.
Chromosome SNP position Plink rsid
4.3 years ago by geno89 ▴ 20
1
vote
1
reply
927
views
Normalize RiboTag samples to input before differential expression with DESeq2
RiboTag DESeq2 RNA-Seq Differential Expression Analysis
updated 3.6 years ago by • 0 • written 4.3 years ago by ▴ 10
0
votes
3
replies
1.9k
views
Unable to extract country name from genbank file
Genbank data extraction
updated 4.3 years ago by ★ 3.9k • written 4.3 years ago by • 0
0
votes
2
replies
1.2k
views
Extraction of specific sequences from a FASTA file
Genomics
4.3 years ago by aranyak111 • 0
9
votes
7
replies
12k
views
6 follow
Forum: When applying to a PhD program in Harvard or MIT, how many publications are recommended?
GradSchool Grad Harvard School Application
updated 4.1 years ago by 45k • written 4.3 years ago by • 0
0
votes
0
replies
554
views
How can I upload pan-genome database data to Neo4j?
pantools pan-genome Neo4J
4.3 years ago by vyacheslavshumbar • 0
0
votes
4
replies
1.4k
views
How to download the final reads of SRA data from NCBI using fastq-dumb
fastq fasta SRA
updated 2.5 years ago by 45k • written 4.3 years ago by ▴ 20
1
vote
3
replies
3.1k
views
Download and install StringTie
StringTie RNA-Seq
updated 4.3 years ago by 153k • written 4.3 years ago by ▴ 60
0
votes
0
replies
595
views
Gene ontology analysis on viral proteins
gene go ontology
4.3 years ago by Chvatil ▴ 140
0
votes
0
replies
443
views
Can anyone suggest me how to perform recombination analysis using RDP4 software
RDP4
4.3 years ago by tilakvallabhaneni • 0
0
votes
1
reply
1.1k
views
Extract data from GTF file
gtf java
updated 4.2 years ago by 45k • written 4.3 years ago by • 0
3
votes
4
replies
1.4k
views
Pair-End Sequencing Algorithm Confusion (Illumina)
Sequencing
updated 4.3 years ago by 15k • written 4.3 years ago by ▴ 110
0
votes
1
reply
921
views
How does Control freec compute for the X and Y chromosomes
CNC freec Control variation Copy
updated 4.3 years ago by 89k • written 4.3 years ago by • 0
3
votes
2
replies
1.5k
views
Is the number of spots in SRA equal to the number of reads
fastq fasta SRA
updated 2.5 years ago by 45k • written 4.3 years ago by ▴ 20
0
votes
3
replies
1.2k
views
Can you lose unmapped reads in BAM file?
unmapped reads BAM
updated 4.3 years ago by ▴ 160 • written 4.3 years ago by • 0
2
votes
2
replies
1.3k
views
Example of simple repository using htslib API to read in .bcf
htslib
4.3 years ago by 4galaxy77 2.9k
0
votes
3
replies
5.5k
views
Can someone suggest the tool to Calculate Tumor Mutation Burden from VCF file
VCF tumor-mutational-burden R TMB
updated 2.3 years ago by 45k • written 6.9 years ago by • 0
10
votes
6
replies
5.2k
views
Limma: Extracting results when the global option of the decideTests is used
R limma
updated 3.1 years ago by ★ 1.3k • written 4.5 years ago by ▴ 130
2
votes
5
replies
1.7k
views
MERLIN: skipped due to megabytes problem
software error SNP snp
updated 4.2 years ago by ▴ 10 • written 4.7 years ago by • 0
1
vote
4
replies
2.2k
views
problem with plotheatmap colors
colors deeptools plotheatmap
updated 4.3 years ago by 45k • written 4.3 years ago by • 0
0
votes
3
replies
1.1k
views
Very low number of micro RNA reads
Genomics
updated 4.3 years ago by 23k • written 4.3 years ago by • 0
0
votes
3
replies
1.3k
views
CD45R isoforms in RNA-seq
RNAseq
4.3 years ago by dioscorea.bulbifera ▴ 10
4
votes
2
replies
1.2k
views
How to measure the similarity of operons from two species?
operon similarity bacteria
updated 4.3 years ago by ▴ 30 • written 5.4 years ago by ▴ 180
0
votes
2
replies
1.2k
views
Subset gff with non-unique seqid
gff
4.3 years ago by hazirliver ▴ 10
4
votes
6
replies
2.6k
views
python importing featureCounts to automate multiple files
featureCounts python
updated 4.3 years ago by 45k • written 4.3 years ago by • 0
0
votes
1
reply
833
views
classification or metadata for metabolites
annotations
updated 4.3 years ago by ▴ 160 • written 4.3 years ago by ▴ 90
12
votes
6
replies
3.1k
views
Which is better: PacBio or Illumina for de novo transcriptome?
transcriptome PacBio Illumina
updated 4.3 years ago by 9.0k • written 4.3 years ago by ▴ 40
0
votes
1
reply
1.2k
views
what is the best tool to remove PCR duplicates from miRNA seq without UMI?
mirna-seq sequencing
updated 2.3 years ago by 45k • written 4.3 years ago by ▴ 320
0
votes
2
replies
1.2k
views
topGO : compare 2 distinct groups
topGO
3.3 years ago by lagartija ▴ 160
2
votes
2
replies
4.6k
views
dyld : Library not loaded: Reason: image not found
python dyld R
updated 2.5 years ago by 45k • written 4.3 years ago by ▴ 20
1
vote
3
replies
1.7k
views
How to remove repeated sequence region in Interproscan .gff3 with many ORFs?
format region interproscan gff3 gtf
updated 4.2 years ago by 9.3k • written 4.3 years ago by • 0
0
votes
0
replies
792
views
How can I make multiple taxID queries using qblast and store multiple blast handles using NCBIXML?
NCBIXML qblast python biopython
updated 2.5 years ago by 45k • written 4.3 years ago by • 0
0
votes
1
reply
796
views
Tools for SNPs and Indels (RNA seq)
SNPs Oxford RNA-seq Nanopore INDELS
updated 4.3 years ago by • 0 • written 4.3 years ago by ▴ 30
0
votes
0
replies
830
views
Job: Postdoc Fellow @ New York: Long Reads, Alternative Splicing and Human Diseases
assembly sequencing RNA-Seq
4.3 years ago by fanggang ▴ 120
118
votes
66
replies
53k
views
20 follow
Tutorial: [Deprecated] Fast download of FASTQ files from the European Nucleotide Archive (ENA)
aspera fastq-dump Fastq ENA
updated 2.5 years ago by 45k • written 7.2 years ago by 89k
0
votes
2
replies
1.4k
views
CNVkit result interpretation
results cnv interpretation
updated 4.3 years ago by ▴ 840 • written 4.3 years ago by ▴ 40
2
votes
6
replies
2.2k
views
Downloading bacterial genomes: correspondence between ftp ncbi identifiers and the "nucleotide" database
python ncbi biopython
updated 4.3 years ago by ★ 3.9k • written 4.3 years ago by ▴ 20
6
votes
6
replies
6.6k
views
Problem with featureCounts using a GTF generated by me
gtf annotation rnaseq
updated 4.3 years ago by 9.3k • written 4.3 years ago by ▴ 20
0
votes
1
reply
2.0k
views
MACS2 error in fragment size estimation from paired-end STAR-aligned RNA-seq data
ChIP-Seq software alignment RNA-Seq error
updated 4.3 years ago by 89k • written 5.2 years ago by • 0
0
votes
1
reply
1.1k
views
Is there a pipeline for analyzing the chromatin states and describe the process of formation?
chromHMM
updated 4.2 years ago by 45k • written 4.3 years ago by • 0
2
votes
1
reply
935
views
jellyfish
HELPPPPPPPPPPP
updated 4.3 years ago by 153k • written 4.3 years ago by • 0
4
votes
5
replies
1.6k
views
List index out of range
python varscan cnvtogenes
4.3 years ago by Samiah ▴ 10
1
vote
4
replies
1.7k
views
unmapped reads BAM TCGA
unmapped BAM read TCGA
updated 4.3 years ago by 153k • written 4.3 years ago by • 0
1
vote
2
replies
1.4k
views
How to choose k-mer for the genome size estimation?
Assembly genome
updated 4.3 years ago by • 0 • written 4.7 years ago by • 0
0
votes
2
replies
1.2k
views
How to calculate PSSM for large batch of proteins?
PSIBLAST BLAST PSSM MACHINELEARNING
4.3 years ago by aakashy01 • 0
1
vote
4
replies
5.0k
views
How to know if the sample from SRA is trimmed or un-trimmed
FASTQC NGS SRA FASTQ NCBI
updated 4.3 years ago by 89k • written 4.3 years ago by ▴ 20
0
votes
0
replies
712
views
About Structural variation genotypes
variants Structural-variants variant-calling genotypes
updated 23 months ago by 45k • written 4.3 years ago by ▴ 720
6
votes
3
replies
7.8k
views
How to set up bcftools plugins?
BCFTOOLS
updated 4.3 years ago by 89k • written 4.3 years ago by ▴ 110
12
votes
8
replies
22k
views
Genome assembly N50
Assembly assembly tools N50
updated 4.3 years ago by 15k • written 7.3 years ago by ▴ 280
3
votes
1
reply
1.3k
views
Fisher exact test in R package
Fisher-test
updated 17 months ago by 45k • written 4.3 years ago by ▴ 10
121,907 results • Page 638 of 2439
Recent Votes
Answer: Tried building a compact sequence format with 4-bit storage
Tried building a compact sequence format with 4-bit storage
Shift in RNA 3' position, Term-Seq vs RNASeq
Comment: STARlong for pacbio Isoseq reads
Comment: Automatically annotating a feature using a genbank file
Answer: Is this PCA plot correct??
Answer: Is this PCA plot correct??
Recent Locations • All
Hong Kong, just now
United States, 4 minutes ago
United Kingdom, 20 minutes ago
Indonesia, 29 minutes ago
Frankrike, 33 minutes ago
France/Nantes/Institut du Thorax - INSERM UMR1087, 49 minutes ago
Machhagan, 50 minutes ago
Recent Awards • All
Popular Question to npb27 ▴ 10
Popular Question to Apprentice ▴ 190
Popular Question to pranavdatar01 • 0
Popular Question to Matteo Ungaro ▴ 130
Popular Question to mbramble • 0
Popular Question to okiedokie1208 ▴ 40
Popular Question to Mariano • 0
Recent Replies
Comment: Is total miRNA in EV constant? Implications for library size normalization. by Gordon Smyth ★ 8.3k
RNA-seq is very good at relative analyes. It would be straightforward to determine which miRNAs are relatively more abundant, compared to o…
Comment: Tried building a compact sequence format with 4-bit storage by Pranava ▴ 10
Woah!!! Thank you very much, Matthias. I honestly didn't even know some of those existed and I will definitely go through them and try to u…
Answer: Tried building a compact sequence format with 4-bit storage by Matthias Zepper 5.1k
Hello Pranava, Thanks for sharing your repository. Devising a new file format is an interesting undertaking and certainly a task with many…
Answer: Gene Ontology Enrichment with LOC gene IDs in Common Carp (Cyprinus carpio) by GenoMax 153k
`LOC` gene ID's are often assigned to uncharacterized genes and you may not get useful information from databases for them, thus they will …
Comment: Whole Genome Sequencing IG regions by GenoMax 153k
> are the calls I am seeing reliable or should I take them with something of a pinch of salt? Not sure what calls you are referring to but…
Comment: RNA-SEQ where only a subset of genes is of interest by piffelpaff • 0
Sorry to revive this ancient thread but I'm currently discussing the same question with some people in my lab and would love to somebody po…
Answer: STARlong for pacbio Isoseq reads by YuZJ • 0
Hello, you may try deSALT (DOI: 10.1186/s13059-019-1895-9, GitHub: ydLiu-HIT/deSALT) or uLTRA (DOI: 10.1093/bioinformatics/btab540, GitHub:…
Comment: Shift in RNA 3' position, Term-Seq vs RNASeq by acvill ▴ 350
Without knowing the details of the Term-seq method, could the 38 nt shift be accounted for by the difference in the position of the ribosom…
Comment: STARlong for pacbio Isoseq reads by Buffo ★ 2.4k
Thanks, I'll give it a try.
Comment: STARlong for pacbio Isoseq reads by GenoMax 153k
You could give `mapPacBio.sh` from BBMap suite a try while you wait for other answers. That works for reads up to 6 kb. BBMap has a new hom…
Comment: STARlong for pacbio Isoseq reads by Buffo ★ 2.4k
The average is 1.8kb. I was planning to post it on GitHub, but it seems like the repository has been unattended for the last months, so I d…
Comment: Getting just fastqc.zip file? by GenoMax 153k
Yes, You can either use it on command line or use the graphical user interface.
Comment: STARlong for pacbio Isoseq reads by GenoMax 153k
What is the average length of your reads? That error sounds like a bug, so you may want to post that on `STAR` repo as an issue. I assume …
Comment: Getting just fastqc.zip file? by pourhangleila95 • 0
I want to perform fastQC on my data.Do you use fastQC software for doing it?
Comment: Whole Genome Sequencing IG regions by 719 • 0
Sorry for the poor wording of the original post, also should say I really appreciate people taking a moment to look at my post. My main con…
Traffic: 4647 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6