Limit : all time
all time today this week this month this year
121,984 results • Page 645 of 2440
Sort: Rank
Rank Views Votes Replies
0
votes
3
replies
1.2k
views
The name of the generated consensus sequence
consensus sequence
updated 4.4 years ago by ★ 1.8k • written 4.4 years ago by ▴ 10
1
vote
0
replies
1.0k
views
Tool: Super easy to use free paper retrieval artifact: PyPubMed
python pubmed software
updated 2.3 years ago by 45k • written 4.4 years ago by ▴ 510
7
votes
13
replies
2.8k
views
Only one gene is upregulated?
DESeq2 gene low R
updated 4.4 years ago by 9.0k • written 4.4 years ago by ▴ 20
0
votes
2
replies
1.1k
views
Identical KEGG pathways enriched by up- and down-regulated genes
Kegg sequencing RNA-Seq next-gen
4.4 years ago by ashwing.kofficial ▴ 10
6
votes
9
replies
3.6k
views
troubleshooting benchmarking small variants: hap.py and rtg
benchmarking
updated 3.9 years ago by 23k • written 4.4 years ago by ▴ 130
3
votes
6
replies
2.7k
views
Trimming overrepresented sequence possible with Trimmomatic?
rnaseq ngs overexpression trimmomatic gsnap
4.2 years ago by ella • 0
16
votes
12
replies
6.5k
views
Reproduce Genome in a Bottle analysis from NA12878 fastq?
genome in a bottle NA12878
updated 10 months ago by ▴ 220 • written 5.0 years ago by ▴ 100
0
votes
1
reply
785
views
Simple question about deleted genes in TCGA CNV level 3 data
log CNV R
updated 4.4 years ago by ★ 3.0k • written 4.4 years ago by ▴ 30
0
votes
3
replies
3.5k
views
Pymol freezes when opened and closed with python
pymol
updated 4.4 years ago by • 0 • written 4.9 years ago by • 0
0
votes
1
reply
763
views
About TCGA CNV data processing
log CNV R
updated 4.4 years ago by 89k • written 4.4 years ago by ▴ 30
3
votes
10
replies
2.3k
views
making of count matrix
scRNA Mutational seq data
4.3 years ago by princy149 • 0
2
votes
1
reply
919
views
From which genome assembly do these coordinates come?
Genome
updated 4.4 years ago by 9.0k • written 4.4 years ago by ★ 2.1k
1
vote
1
reply
791
views
Finding equivalence between annotations from different species
Genome RNAseq Stringtie Annotation
updated 4.4 years ago by ▴ 30 • written 4.4 years ago by • 0
1
vote
0
replies
877
views
Comparison of Bisulfite sequencing results with Methylkit and edgeR
edgeR sequencing Bisulfite methylkit
4.4 years ago by iraia.munoa ▴ 130
1
vote
0
replies
2.5k
views
SPAdes running finished abnormally, err code: -6
SPAdes_Running_finish_Abnormally
4.4 years ago by ELIAS GEORGE ▴ 10
6
votes
6
replies
11k
views
Seurat to Dataframe with ONLY counts, cells, and cluster labels?
R RNA-Seq Seurat
4.4 years ago by Kind Katydid ▴ 30
0
votes
0
replies
683
views
The accession number of generated consensus sequence and reference sequence
generation consensus sequence
4.4 years ago by mngpn • 0
7
votes
7
replies
9.5k
views
How to fix missing values error message after SCTransform (Seurat)?
Seurat R SCTransform
4.4 years ago by Pratik ★ 1.1k
0
votes
0
replies
1.1k
views
gPLINK error
error gPLINK PLINK
4.4 years ago by Anel • 0
0
votes
0
replies
723
views
PHG - RunHapConsensusPipelinePlugin - "0 taxa used to build distance matrix" Error
rtassel PHG tassel rPHG
4.4 years ago by Orionzhou ▴ 10
3
votes
1
reply
1.7k
views
What is the x-axis in ridgeplot produced by enrichplot package?
ridgeplot enrichplot clusterProfiler gsea
updated 4.4 years ago by ★ 19k • written 4.4 years ago by • 0
0
votes
0
replies
815
views
tree in newick format for
gene newick MCScanX
4.4 years ago by Ric ▴ 440
0
votes
1
reply
1.0k
views
Prediction of protein sub-cellular localisation
Protein Proteome Localisation Prediction
updated 4.4 years ago by ★ 4.0k • written 4.4 years ago by ▴ 10
1
vote
3
replies
1.3k
views
[DESeq2] Can I setup a formula that includes a common time zero and also a two-factor analysis?
DESeq2 two-way two-factor fitness
updated 4.4 years ago by 9.0k • written 4.4 years ago by ▴ 40
0
votes
2
replies
2.8k
views
" Exon/exon junction cannot be found for submitted PCR template. "--how to bypass, or work with?
exon gene primer splicing intron
4.4 years ago by lsizemor • 0
4
votes
5
replies
3.1k
views
Most of the top marker genes identified by FindConservativeMarkers (seurat) have negative logFC.
findconservativemarkers single seurat marker cell
updated 4.4 years ago by ★ 19k • written 4.4 years ago by ▴ 300
5
votes
3
replies
4.4k
views
KEGG NOT RUN with new Bioconductor version 3.13 and 4.1 R version
R 4.1
4.4 years ago by Victoria ▴ 10
2
votes
5
replies
1.6k
views
Ballgown Package of R for the Differential Expressed Genes (DEGs)
programming
updated 4.4 years ago by 89k • written 4.4 years ago by • 0
1
vote
1
reply
935
views
Error in plotMA while using limma package
limma
updated 4.4 years ago by 21k • written 4.4 years ago by • 0
0
votes
0
replies
538
views
Choosing the appropriate covariates for quantitative gwas model
GWAS
4.4 years ago by b.quoc • 0
13
votes
6
replies
1.6k
views
6 follow
Is training data used exclusively in machine learning
learning machine
updated 4.4 years ago by 89k • written 4.4 years ago by ▴ 410
1
vote
2
replies
1.2k
views
CHIPseeker error- cannot annotate peaks
CHIP-seeker annotation
4.4 years ago by rb56 ▴ 30
0
votes
3
replies
1.4k
views
Job: Bioinformatics Curator Positions with Computercraft @ NCBI
biology ncbi curator
updated 4.3 years ago by 45k • written 4.4 years ago by ▴ 90
1
vote
10
replies
2.9k
views
Extract NCBI's refseq assembly accession number from nuccore IDs
sequence
updated 4.3 years ago by 45k • written 4.4 years ago by ▴ 10
0
votes
0
replies
872
views
errors in polishing after clustering using isoseq3
ZMWs isoseq3 polish
4.4 years ago by wzw0029 • 0
1
vote
2
replies
760
views
Cytoscape - knowing and exporting layouts
Cytoscape
4.4 years ago by lagartija ▴ 160
0
votes
1
reply
731
views
How to extract a particular aligned sequence from an MSA?
Clustal Fasta MSA
updated 4.4 years ago by 154k • written 4.4 years ago by • 0
63
votes
17
replies
41k
views
16 follow
Scientific Names In Blast Output And Databases
blast blast+
updated 2.8 years ago by 45k • written 12.2 years ago by ★ 2.1k
0
votes
0
replies
645
views
Illumina Omni2.5 genotyping get actual genotypes.
genotyping omni illumina
4.4 years ago by nhaus ▴ 420
0
votes
0
replies
699
views
DNAcopy object
segmentation segment DNAcopy cna
4.4 years ago by GG • 0
1
vote
9
replies
4.8k
views
7 follow
de-novo whole genome assembly and annotation
Assembly
updated 4.4 years ago by ▴ 50 • written 8.8 years ago by • 0
3
votes
11
replies
2.7k
views
Simple genome annotation using transcripts data
annotation fasta gff
updated 4.4 years ago by ▴ 50 • written 5.3 years ago by ★ 1.5k
2
votes
7
replies
4.0k
views
Using RNA seq for genome annotation
maker annotation
updated 4.4 years ago by 103k • written 8.4 years ago by ▴ 690
1
vote
3
replies
1.6k
views
Genome annotation: small dataset of genomes
genome gene alignment
updated 4.4 years ago by ▴ 50 • written 6.9 years ago by • 0
2
votes
5
replies
12k
views
Software for Genome Annotation
gene
updated 4.4 years ago by ▴ 50 • written 7.3 years ago by ▴ 10
0
votes
3
replies
2.8k
views
Genome annotation using transcriptome data
genome annotation transcriptome
updated 4.4 years ago by ▴ 50 • written 7.1 years ago by ▴ 10
2
votes
6
replies
2.7k
views
How to do Genome Annotation?
GenomeAnnotation
updated 4.4 years ago by ▴ 50 • written 8.6 years ago by ▴ 60
6
votes
6
replies
2.2k
views
de novo annotation of plants genome
annotation genome plants
updated 4.3 years ago by ▴ 320 • written 5.6 years ago by ▴ 350
9
votes
6
replies
5.4k
views
Best Genome Assembler and Genome Annotation tools and pipelines
annotation assembly genome birds
updated 2.3 years ago by 45k • written 6.2 years ago by ▴ 10
0
votes
3
replies
2.6k
views
Annotation for denovo genomic data
genome gene
updated 4.4 years ago by ▴ 50 • written 8.0 years ago by • 0
121,984 results • Page 645 of 2440
Recent Votes
Answer: Nextflow MultiQC runs multiple times due to FASTQC zip name collisions
Comment: Quantification using salmon in alignment-based mode after minimap2 run
Answer: Quantification using salmon in alignment-based mode after minimap2 run
Comment: Quantification using salmon in alignment-based mode after minimap2 run
Answer: Corresponding BAM files
Answer: Tools To Calculate Average Coverage For A Bam File?
A: Bioinformatic Cartoon
Recent Locations • All
London, United Kingdom, just now
Spain, 4 minutes ago
Munich, 6 minutes ago
United Kingdom, 12 minutes ago
India, 15 minutes ago
France, 15 minutes ago
United Kingdom, 26 minutes ago
Recent Awards • All
Popular Question to eebloom ▴ 110
Popular Question to 1769mkc ★ 1.3k
Popular Question to andres.firrincieli 3.9k
Popular Question to biotrekker ▴ 110
Popular Question to Ibrahim Tanyalcin ★ 1.2k
Scholar to DdogBoss ▴ 30
Popular Question to Info-rggs ▴ 20
Recent Replies
Answer: ::Last Call:: In-Person Workshop - NGS Epigenomics Data Analysis (November 3-5 i by ecSeq Bioinformatics ▴ 20
Last Call for this event. Apply now, if you like to join.
Comment: Difficulty running FoldX in linux by Mensur Dlakic ★ 30k
The program is definitely working. It doesn't matter that it didn't produce `TER` and `END` lines at the end. Those are optional in PDB fil…
Answer: Best set of tools / workflows for predicting the biosynthesis pathways of comple by ehaag ▴ 100
I tried [searching for tools in the NIAID Data Ecosystem][1] and found something that may be relevant. [PathPred][2] is an enzyme catalyzed…
Answer: Tools to simulate Illumina short read sequences and ONT long reads with a refere by ehaag ▴ 100
I did a quick [search for tools in the NIAID Data Ecosystem][1] and found a few that map Illumina short reads onto a reference genome, incl…
Answer: Corresponding BAM files by GenoMax 154k
You can get BAM files for 10x single-cell data and they can be found under the `Data Access` tab of the SRA record under the `Original Form…
Comment: GTF file for HIV strain pNL4-3 by Ales ▴ 50
All of the genome assemblies are from the LANL compendiu, match accession with GENBANK (>2,000 complete genome assemblies from the 2021 LAN…
Comment: Hisat2 splice sites extract blank files by Ales ▴ 50
hisat2_extract...py scripts make several assumptions about the input GTF files. For example, they require gene_id field to be present for a…
Comment: GTF file for HIV strain pNL4-3 by GenoMax 154k
> This project started from my personal need to improve spliced alignment Are there plans to submit these annotations to NCBI/EBI? Are yo…
Comment: Hisat2 splice sites extract blank files by Ales ▴ 50
Interestingly, HIV/SIV specifically does have quite an elaborate splicing system which regulates translation. However, only one of the spli…
Answer: Analyzing CRISPR and RNAi genome wide screens by Meisam ▴ 250
I'm late to the party but in case someone has the same question: one practical approach is using **rank-based** methods to meta-analyse you…
Answer: meta data analysis for clustering by Meisam ▴ 250
I'm late to the party but one practical approach is using **rank-based** methods to meta-analyse your screens, which basically bypass the n…
Comment: convert genome file to transcriptome file by Ales ▴ 50
Should be noted that the gtf/gff and genomic.fna files for HIV only contain CDS annotations of the 9 ORFs and not the full transcripts. Onl…
Comment: GTF file for HIV strain pNL4-3 by Ales ▴ 50
just wanted to follow up that to address this specific issue we just released HIV transcriptome annotations of alternative splicing featuri…
Answer: GTF file for HIV strain pNL4-3 by Ales ▴ 50
For anyone stumbling on this. We have recently completed reference-grade annotation for several thousand HIV-1 genomes including the HXB2 (…
Comment: Dorado in PowerShell on Windows by sbissi102 ▴ 10
Yes, I found all the barcodes, but could working on WSL affect the basecalling results?
Traffic: 3614 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6