Limit : all time
all time today this week this month this year
122,199 results • Page 645 of 2444
Sort: Rank
Rank Views Votes Replies
0
votes
0
replies
852
views
How can I make multiple taxID queries using qblast and store multiple blast handles using NCBIXML?
NCBIXML qblast python biopython
updated 2.7 years ago by 45k • written 4.5 years ago by • 0
0
votes
1
reply
869
views
Tools for SNPs and Indels (RNA seq)
SNPs Oxford RNA-seq Nanopore INDELS
updated 4.5 years ago by • 0 • written 4.5 years ago by ▴ 30
0
votes
0
replies
876
views
Job: Postdoc Fellow @ New York: Long Reads, Alternative Splicing and Human Diseases
assembly sequencing RNA-Seq
4.5 years ago by fanggang ▴ 120
118
votes
66
replies
54k
views
20 follow
Tutorial: [Deprecated] Fast download of FASTQ files from the European Nucleotide Archive (ENA)
aspera fastq-dump Fastq ENA
updated 2.7 years ago by 45k • written 7.4 years ago by 90k
0
votes
2
replies
1.5k
views
CNVkit result interpretation
results cnv interpretation
updated 4.5 years ago by ▴ 840 • written 4.5 years ago by ▴ 40
2
votes
6
replies
2.3k
views
Downloading bacterial genomes: correspondence between ftp ncbi identifiers and the "nucleotide" database
python ncbi biopython
updated 4.5 years ago by ★ 3.9k • written 4.5 years ago by ▴ 20
6
votes
6
replies
6.9k
views
Problem with featureCounts using a GTF generated by me
gtf annotation rnaseq
updated 4.4 years ago by 9.3k • written 4.5 years ago by ▴ 20
0
votes
1
reply
2.2k
views
MACS2 error in fragment size estimation from paired-end STAR-aligned RNA-seq data
ChIP-Seq software alignment RNA-Seq error
updated 4.5 years ago by 90k • written 5.4 years ago by • 0
0
votes
1
reply
1.2k
views
Is there a pipeline for analyzing the chromatin states and describe the process of formation?
chromHMM
updated 4.4 years ago by 45k • written 4.5 years ago by • 0
2
votes
1
reply
983
views
jellyfish
HELPPPPPPPPPPP
updated 4.5 years ago by 154k • written 4.5 years ago by • 0
4
votes
5
replies
1.8k
views
List index out of range
python varscan cnvtogenes
4.5 years ago by Samiah ▴ 10
1
vote
4
replies
1.9k
views
unmapped reads BAM TCGA
unmapped BAM read TCGA
updated 4.5 years ago by 154k • written 4.5 years ago by • 0
1
vote
2
replies
1.5k
views
How to choose k-mer for the genome size estimation?
Assembly genome
updated 4.5 years ago by • 0 • written 4.9 years ago by • 0
0
votes
2
replies
1.3k
views
How to calculate PSSM for large batch of proteins?
PSIBLAST BLAST PSSM MACHINELEARNING
4.5 years ago by aakashy01 • 0
1
vote
4
replies
5.2k
views
How to know if the sample from SRA is trimmed or un-trimmed
FASTQC NGS SRA FASTQ NCBI
updated 4.5 years ago by 90k • written 4.5 years ago by ▴ 20
0
votes
0
replies
783
views
About Structural variation genotypes
variants Structural-variants variant-calling genotypes
updated 2.1 years ago by 45k • written 4.5 years ago by ▴ 730
6
votes
3
replies
8.3k
views
How to set up bcftools plugins?
BCFTOOLS
updated 4.5 years ago by 90k • written 4.5 years ago by ▴ 110
12
votes
8
replies
23k
views
Genome assembly N50
Assembly assembly tools N50
updated 4.5 years ago by 16k • written 7.5 years ago by ▴ 280
3
votes
1
reply
1.4k
views
Fisher exact test in R package
Fisher-test
updated 20 months ago by 45k • written 4.5 years ago by ▴ 10
4
votes
0
replies
1.6k
views
Tutorial: Long Read Genome Assembly Video Series
long-read genome-assembly
4.5 years ago by pbpanigrahi ▴ 430
0
votes
1
reply
954
views
Query regarding WGCNA module formation
WGCNA R RNA-seq
updated 4.5 years ago by 3.9k • written 4.5 years ago by ▴ 30
0
votes
1
reply
1.2k
views
Detection of biallelic mutation (inactivation)
somatic biallelic mutation
updated 4.5 years ago by ▴ 160 • written 4.5 years ago by ▴ 750
15
votes
10
replies
23k
views
7 follow
How to convert bulk UniProt Id to GO terms/Ids?
Uniprot RNA-Seq Assembly
updated 4.5 years ago by ★ 1.1k • written 8.8 years ago by ▴ 50
1
vote
0
replies
1.3k
views
Colocalization window size
COLOC eqtl R gwas
updated 4.5 years ago by 12k • written 4.5 years ago by ▴ 110
8
votes
25
replies
5.0k
views
construction of a database
sql noSQL neo4j database
updated 2.7 years ago by 45k • written 4.5 years ago by ▴ 20
2
votes
3
replies
13k
views
Using Seurat function `FindMarkers` to find differentially expressed genes between normal group and treatment group within one specific cell type clu…
Seurat FindMarkers scRNA
updated 4.5 years ago by 90k • written 4.5 years ago by ▴ 60
4
votes
6
replies
14k
views
Looking for differential gene expression between treatment, within a specific cluster (seurat)
seurat
updated 18 months ago by ★ 19k • written 6.2 years ago by ▴ 250
2
votes
4
replies
1.4k
views
What is the meaning of the name MUMmer ?
Mummerplot Dna Alignment Mummer Sequence
4.5 years ago by Student ▴ 30
0
votes
0
replies
780
views
GWAS catalog results as input for Prsice2
Polygenic SNPs scoring risk GWAS Genotype
4.5 years ago by davidenoma ▴ 50
0
votes
3
replies
1.8k
views
Sequence Read Archive (SRA) submission ERROR
submission rnaseq sra
updated 4.1 years ago by • 0 • written 4.5 years ago by ▴ 40
2
votes
1
reply
941
views
Color protein multiple sequence alignement per secondary structures
multiple secondary sequence alignment structures color
4.5 years ago by ttubiana ▴ 30
0
votes
4
replies
1.4k
views
different padj from DESeq2 when using different contrast input format
DESeq2 RNA-Seq
4.5 years ago by cwwong13 ▴ 40
2
votes
4
replies
1.4k
views
whole tissue and RNA-seq: can I still study specific cell types?
WGCNA rnaseq
4.5 years ago by demoraesdiogo2017 ▴ 120
0
votes
2
replies
2.0k
views
Converting U to T in my miRNA sequences
RNA-Seq
updated 4.5 years ago by 166k • written 4.5 years ago by • 0
1
vote
1
reply
1.9k
views
Job: Bioinformatics Solution Architect @ Elucidata, Cambridge MA (USA)
Cambridge Boston
updated 4.4 years ago by 45k • written 4.5 years ago by • 0
0
votes
1
reply
1.3k
views
SICER2 (or EPIC) genomes
Genome EPIC ChIP-seq SICER Sequencing
updated 4.5 years ago by 90k • written 4.5 years ago by ▴ 20
1
vote
3
replies
1.6k
views
circular R plot
r
updated 4.5 years ago by 45k • written 4.5 years ago by • 0
0
votes
1
reply
1.2k
views
How can i handle the multimapped reads?
assembly sequencing alignment
updated 4.5 years ago by • 0 • written 4.8 years ago by ▴ 130
2
votes
4
replies
1.1k
views
Finding length of multiple fastq.gz files
zcat Fastq
updated 4.5 years ago by 21k • written 4.5 years ago by ▴ 30
5
votes
2
replies
1.8k
views
How to compare cell-type ratios in sc-RNA seq data?
sc-RNA single-cell cell-type
4.5 years ago by sc-ruzafa ▴ 20
2
votes
1
reply
1000
views
Package/script for random DNA generation with a pattern!
DNA regex methylation
updated 4.5 years ago by ★ 2.9k • written 4.5 years ago by ★ 1.6k
7
votes
7
replies
14k
views
7 follow
ViennaRNA error: ImportError: No module named _RNA
python viennrna
updated 3.5 years ago by • 0 • written 11.5 years ago by • 0
1
vote
2
replies
1.1k
views
Cytoscape JSON file format and STYLE storage
Cytoscape Styles JSON
updated 2.7 years ago by 45k • written 4.5 years ago by ▴ 60
0
votes
0
replies
877
views
Read group: ID, PU definition and multi-lane (same sample)
multilane group_read RG
4.5 years ago by emma.a ▴ 130
1
vote
1
reply
3.1k
views
ValueError: attempt to get argmax of an empty sequence
mtag python2
updated 4.5 years ago by ★ 2.9k • written 4.5 years ago by ▴ 20
1
vote
0
replies
1.1k
views
calculate LCA with MEGAN UE command line mode for multiple bast files
LCA line MEGAN6 command
4.5 years ago by Mathilde Borg Dahl ▴ 10
2
votes
2
replies
4.1k
views
Reference Genome dna, rm or sm??
unmaksed Reference masked genome
4.5 years ago by SKY ▴ 60
0
votes
0
replies
808
views
Job: PhD position: Computational Epigenetics in cancer cell reprogramming
organization chromatin 3D analyses data image proecessing HiCHIP integrative OligoSTORM
4.5 years ago by alessio.zippo • 0
0
votes
5
replies
1.4k
views
How can I drop the MAPQ info of my sam/bam file?
bam
updated 4.5 years ago by 9.0k • written 4.5 years ago by ▴ 90
0
votes
0
replies
904
views
Job: Senior Bioinformatician (Proteomics, Immunocore, UK)
proteomics UK immunocore
updated 4.4 years ago by 45k • written 4.5 years ago by • 0
122,199 results • Page 645 of 2444
Recent Votes
Answer: Midpoint rooting IQTREE newick file moves node support around
Answer: Subsetting before QC in Spatial Transcriptomics
Answer: Feature Counts vs Salmon quantification
Comment: Feature Counts vs Salmon quantification
Answer: Can i use orthofinder for small protein datasets and not full proteome?
Comment: Comparison of different RNAseq data sets
Comment: ID unifiying across different datasets
Recent Locations • All
Norway, 1 minute ago
Italy, 3 minutes ago
United Kingdom, 7 minutes ago
Netherlands, 10 minutes ago
Norway, 10 minutes ago
Italy, 14 minutes ago
United Kingdom, 24 minutes ago
Recent Awards • All
Teacher to ATpoint 90k
Popular Question to san96 ▴ 190
Popular Question to RD ▴ 30
Popular Question to Wilber0x ▴ 70
Popular Question to DrSmad ▴ 10
Popular Question to Rubemsilva32 • 0
Popular Question to curious ▴ 900
Recent Replies
Comment: low quality data or file name swapping -- cellranger arc errors when processing by Arup Ghosh 3.5k
You can check the read lengths of each file to determine which one is the R1 and which is the R2. Also, check the 10x protocol version they…
Comment: Subsetting before QC in Spatial Transcriptomics by Kent ▴ 30
Hi Kevin, Thanks for the detailed explanation. Due to the characteristics of the datasets, we initially used very lenient quality control…
Comment: Midpoint rooting IQTREE newick file moves node support around by Luca Arbore ▴ 10
Thank you very much Kevin, it worked!
Comment: ID unifiying across different datasets by GenoMax 154k
In this case the entry notes that this is likely the product of a pseudogene: https://www.uniprot.org/uniprotkb/Q5VTE0/entry and existence …
Comment: Comparison of different RNAseq data sets by DrSmad ▴ 10
Each lab contributes both control and LPS. Example, for cell line A_lab1 did and analysis on control and LPS-6h. Cell line B_lab2 did contr…
Comment: ID unifiying across different datasets by zizigolu ★ 4.4k
sorry, why some gene names are often lacking though the Uniprot ID is still valid (using biomart)?
Comment: snpEff: Unsupported structural variant types by shpak.max ▴ 70
Unfortunately, while it ran without a problem initially, when I checked the run screen today, I saw the following error message (and unlike…
Comment: ID unifiying across different datasets by GenoMax 154k
You can use the [**ID mapping tool**][1] from UniProt site (third ID did not map from the list above): From To P68104 ENSG0000015…
Answer: The geo samples is not having sentrix id and sentrix position. But this informat by yura.grabovska ▴ 890
Crosspost from related question: https://www.biostars.org/p/9616466/#9616534 ``` ##Using R, illuminaio from Bioconductor library(…
Answer: Finding Sentrix ID in HM450K arrays by yura.grabovska ▴ 890
``` ##Using R, illuminaio from Bioconductor library(illuminaio) temp.idat <- readIDAT(file = "200379120087_R02C02_Grn.idat") tem…
Comment: Can i use orthofinder for small protein datasets and not full proteome? by michael.ante ★ 4.0k
Do you want to compare them by sequence or by function? For the later, you can use e.g. InterProScan, KoFamScan.
Answer: Can i use orthofinder for small protein datasets and not full proteome? by dthorbur ★ 3.2k
If you're just using the tool for clustering purposes, I think OrthoFinder might be a little clunky and would recommend using something lik…
Comment: ID unifiying across different datasets by zizigolu ★ 4.4k
Thank you; The problem is let's say in the protein ID column I see `Q5VTE0;P68104;Q05639` here I am sure I should get which `ENSG` for eac…
Comment: How to improving 2-Nucleotide RNA-seq Mapping Accuracy by 2411110159 • 0
Since we do not have real data yet, I tried to simulate this using strand-specific RNA bisulfite-seq reads (C to T). Read1 corresponds to t…
Comment: How to Use Biostars, Part-I: Questions, Answers, Comments and Replies by 2411110159 • 0
Very helpful!
Traffic: 3720 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6