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Effect of SNPs position on gene expression/structure
structure gene SNPs expression
4.4 years ago by abdin-marwa ▴ 10
2
votes
5
replies
5.8k
views
Unable to access ensembl biomart archives via R
R ensembl biomart
updated 4.4 years ago by ▴ 10 • written 6.2 years ago by • 0
3
votes
6
replies
3.3k
views
StringTie FPKM output to DESeq2 input
Cufflinks DESeq2 RNA-Seq StringTie
updated 3.1 years ago by ▴ 60 • written 4.4 years ago by ▴ 60
1
vote
0
replies
882
views
How can I use a vcf file in trackViewer? Issues with TabixFile - coercing S4 class to a vector
vcf R VariantAnnotation trackViewer
4.4 years ago by cristinadias.gen ▴ 10
0
votes
4
replies
1.4k
views
What does a bp column in gene level data mean?
gene exac gnomad database genetics
4.4 years ago by DN99 ▴ 20
4
votes
5
replies
2.8k
views
How to analyse TCGA CNV data with GAIA R package
CNV TCGA GAIA R
updated 4.4 years ago by 89k • written 4.4 years ago by • 0
0
votes
6
replies
3.8k
views
How convert fasta into Iso-seq bam？
Iso-seq subreads
updated 3.9 years ago by • 0 • written 4.4 years ago by • 0
2
votes
2
replies
2.5k
views
read count for RNA sequencing via nanopore
long-reads RNA-seq gene-expression read-count
updated 18 months ago by 45k • written 4.4 years ago by • 0
3
votes
5
replies
5.6k
views
How to distinguish orthologs from paralogs?
ortholog evolution paralog homolog
updated 4.3 years ago by ▴ 50 • written 4.4 years ago by ▴ 20
0
votes
0
replies
606
views
Pictogram of artificial miRNA
artificial miRNA Pictogram of
4.4 years ago by Rasha • 0
2
votes
6
replies
5.6k
views
Seurat object create
Seurat RStudio
updated 4.4 years ago by ★ 1.7k • written 4.4 years ago by • 0
0
votes
2
replies
1.3k
views
Can't get accession number using Entrez.
python search entrez
4.4 years ago by charlieclark1ee ▴ 20
0
votes
3
replies
1.2k
views
top 25 species from all sample datasets
Metagenomics Data-Analysis WholeShotgunMetagenome Microbiome
updated 4.4 years ago by ★ 1.7k • written 4.4 years ago by • 0
1
vote
4
replies
1.9k
views
the plot of drug-gene expression correlation
correlation drug-gene expression
4.4 years ago by Binghong ▴ 20
1
vote
5
replies
5.3k
views
Failed to link 10x file in Rstudio
Seurat RStudio
updated 4.4 years ago by ★ 19k • written 4.4 years ago by • 0
1
vote
2
replies
1.1k
views
call peaks of single-end mapping bam files
ChIP-Seq alignment error software genome
4.4 years ago by szp770 ▴ 10
0
votes
2
replies
10k
views
Low Fraction Reads in Cells (Cellranger Count Pipeline)
snRNA-seq 10X cellranger
updated 4.4 years ago by ▴ 110 • written 4.4 years ago by ▴ 10
0
votes
0
replies
917
views
How to update rsid given chromosome number, chr position, a1 and a2
SNP ID
4.4 years ago by paria ▴ 110
0
votes
6
replies
2.2k
views
error on extracting a snp from vcf file using bcftools
snp
updated 4.4 years ago by 9.8k • written 4.4 years ago by • 0
1
vote
0
replies
824
views
Does the GAF gene ontologies file only contain terms that are leaf nodes?
gene GO ontology
4.4 years ago by n,n ▴ 390
0
votes
0
replies
1.1k
views
export data from indicspecies
multipatt R
updated 4.4 years ago by 154k • written 4.4 years ago by • 0
2
votes
2
replies
1.2k
views
Model selection for phylogenetic analysis
phylogenetics prottest3 model
4.4 years ago by Vasiliy Krestov ▴ 30
2
votes
2
replies
1.3k
views
guppy and Radeon graphic cards
guppy
updated 4.4 years ago by 154k • written 4.4 years ago by 3.9k
0
votes
6
replies
4.1k
views
Downloading all runs using fastq-dump
fastq-dump SRAtoolkit
updated 4.3 years ago by ▴ 90 • written 4.4 years ago by ▴ 140
2
votes
5
replies
1.5k
views
Trying to run an ANOVA or Kruskall Wallis but struggling
Simpsons R ANOVA kruskall wallis Index
updated 4.4 years ago by 89k • written 4.4 years ago by • 0
2
votes
3
replies
1.6k
views
No output produced from searching against known motif database in CentriMo
centrimo motif meme tomtom TFBS
updated 4.4 years ago by ★ 1.7k • written 4.4 years ago by ▴ 190
0
votes
10
replies
5.2k
views
6 follow
How to use seqff.r script (estimating fetal fraction)
ngs fetal_fraction seqff
updated 3.3 years ago by • 0 • written 5.2 years ago by ▴ 20
2
votes
2
replies
1.7k
views
WGCNA module network interpretation
network WGCNA
4.4 years ago by demoraesdiogo2017 ▴ 120
1
vote
1
reply
740
views
Create Image using gg plot in R
R ggplot
updated 4.4 years ago by 45k • written 4.4 years ago by ▴ 140
0
votes
3
replies
1.1k
views
Biopython blastn speed versus web query
blast biopython
updated 4.4 years ago by 16k • written 4.4 years ago by • 0
1
vote
4
replies
4.7k
views
GTEx eQTL data
eQTL GTEx gene
updated 4.4 years ago by ★ 9.6k • written 5.5 years ago by ▴ 20
0
votes
2
replies
1.4k
views
eQTL Catalogue Browser: limitation
Catalogue eQTL
4.4 years ago by Shicheng Guo ★ 9.6k
0
votes
5
replies
2.3k
views
Bcftools consensus sample
sample Bcftools consensus
updated 4.4 years ago by 166k • written 4.4 years ago by ▴ 10
3
votes
9
replies
2.7k
views
hisat2
NGS hisat2
updated 4.3 years ago by 45k • written 4.4 years ago by • 0
0
votes
0
replies
874
views
Scaling HOMER tag directories
ChIP-seq Next HOMER Generation Sequencing
4.4 years ago by jjp55 ▴ 20
1
vote
1
reply
1.2k
views
calculating allele frequencies in a vcf
frequency vcf allele
updated 4.4 years ago by 89k • written 4.4 years ago by ▴ 60
0
votes
0
replies
613
views
Looking for a table of gene expression from Encode RNA-seq experiments
encode
4.4 years ago by changxu.fan ▴ 80
0
votes
1
reply
921
views
How can I convert embl files to gff3?
Formart
updated 4.4 years ago by ★ 1.7k • written 4.4 years ago by • 0
0
votes
0
replies
671
views
Different haplogrouping in graphical and text haplogrep results
graphviz lineage mtDNA haplogrep
4.4 years ago by irieljoerin ▴ 40
4
votes
10
replies
11k
views
6 follow
GATK HaolotypeCaller takes too much time for variant calling
HaplotypeCaller GATK
updated 18 months ago by 45k • written 7.9 years ago by ▴ 930
1
vote
0
replies
847
views
How to filter the germline INDELS?
INDELS GATK VCF
4.4 years ago by DareDevil ★ 4.4k
0
votes
0
replies
1.7k
views
Job: Multiple data scientist positions in computational biomedicine
learning biomedicine EHR machine
4.4 years ago by pandey.gaurav ▴ 200
1
vote
2
replies
4.3k
views
Cuffdiff for differential gene expression
fpkm Cuffdiff
updated 3.1 years ago by 45k • written 10.0 years ago by • 0
1
vote
3
replies
1.3k
views
Cuffdiff for DEGs
DEGs Cuffdiff
updated 4.4 years ago by 45k • written 4.4 years ago by • 0
0
votes
0
replies
1.0k
views
Job: PhD Opportunity
exome-analysis gene-expression splice
updated 4.3 years ago by 45k • written 4.4 years ago by ▴ 60
0
votes
0
replies
921
views
Job: Postdoctoral Associate , Baylor College of Medicine, Human Genome Sequencing Center, Houston, United States
TGS NGS
updated 4.3 years ago by 45k • written 4.4 years ago by 9.8k
4
votes
3
replies
2.6k
views
Coverage data for TCGA BAM files
exome number tcga copy dna whole coverage
4.4 years ago by enho ▴ 60
0
votes
0
replies
1.0k
views
convert genome assembly to vcf file (Variant Call Format)
assembly vcf genome
4.4 years ago by cabraham03 ▴ 30
0
votes
0
replies
898
views
Extracting Promoter Sequence from reverse Strand using NCBI Entrez and Eukaryotic Promoter Database?
Database design Promoter strand gene sequence Eukarytoic methylation Primer reverse
4.4 years ago by Lys • 0
2
votes
2
replies
1.7k
views
How to confirm, using Seurat, whether a variation in the cell numbers between scRNA-seq experiment groups is because of the different treatments?
Seurat UMI histogram scRNA-seq
4.4 years ago by Attaya • 0
121,984 results • Page 644 of 2440
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The program is definitely working. It doesn't matter that it didn't produce `TER` and `END` lines at the end. Those are optional in PDB fil…
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I tried [searching for tools in the NIAID Data Ecosystem][1] and found something that may be relevant. [PathPred][2] is an enzyme catalyzed…
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> This project started from my personal need to improve spliced alignment Are there plans to submit these annotations to NCBI/EBI? Are yo…
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Should be noted that the gtf/gff and genomic.fna files for HIV only contain CDS annotations of the 9 ORFs and not the full transcripts. Onl…
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Yes, I found all the barcodes, but could working on WSL affect the basecalling results?
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Since I was running in stub-run mode, the solution was to make unique names for the FASTQC process like this: touch ${sample}_${rea…
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