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122,199 results • Page 643 of 2444
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2
votes
7
replies
6.5k
views
6 follow
How to remove samples with no genotypes from vcf
VCF
updated 3.1 years ago by ▴ 50 • written 4.5 years ago by ▴ 510
0
votes
6
replies
3.6k
views
EdgeR compare multiple groups in a 1 vs other comparison?
Expression R EdgeR Differential
4.5 years ago by shanasabri ▴ 40
3
votes
8
replies
5.4k
views
how to batch download SARS-CoV-2 sequences data from NCBI?
sequence sequencing
updated 4.5 years ago by 154k • written 5.0 years ago by ▴ 40
2
votes
3
replies
4.0k
views
Extremely low bootstrap values for phylogenetic tree
bootstrap phylogenetic tree
updated 4.5 years ago by 56k • written 4.5 years ago by ▴ 20
0
votes
0
replies
951
views
Job: PhD position: bioinformatics analysis of omics data in frontotemporal dementia
genetics phd
updated 2.5 years ago by 45k • written 4.5 years ago by 48k
0
votes
0
replies
898
views
Job: JOB: Data Ontologist - Remote
data-ontologist
updated 3.0 years ago by 45k • written 4.5 years ago by • 0
0
votes
0
replies
865
views
Job: JOB: Bioinformatician - Remote
bioinformatics-scientist
updated 3.0 years ago by 45k • written 4.5 years ago by • 0
0
votes
0
replies
789
views
Tool: Unicorn Papers - Top ‱ cited papers from PUBMED
citation paper research PUBMED bibliometrics
4.5 years ago by Lukasz Kozlowski • 0
1
vote
7
replies
2.8k
views
ENA: Same ERR for multiple samples
ENA
updated 4.5 years ago by 154k • written 4.5 years ago by ▴ 130
2
votes
5
replies
2.1k
views
filtering vcfs by at least lof variants
lof
4.5 years ago by storm1907 ▴ 30
2
votes
12
replies
5.1k
views
prefetch in linux
RNA coding data non SRR
updated 4.5 years ago by 90k • written 4.5 years ago by • 0
0
votes
0
replies
909
views
News: Online Training - DNA Methylation
DNAmethylation epigenetics
updated 4.4 years ago by 45k • written 4.5 years ago by ★ 2.7k
0
votes
8
replies
2.0k
views
Convert "chrom:position" to gene name
gene R
updated 4.5 years ago by 45k • written 4.5 years ago by ▴ 30
0
votes
0
replies
1.5k
views
Have a question about run jellyfish in many directories with different number of zipped fasta files
bash
4.5 years ago by schlogl ▴ 180
0
votes
0
replies
800
views
CNV detection from populational allele frequency data
CNV genetics populational
4.5 years ago by Eugene A ▴ 190
0
votes
0
replies
694
views
Using R package to implement Bayesian phase I/II dose-finding design for three outcomes
clinic biostatistics trial dose-finding Bayesian
4.5 years ago by Ran • 0
2
votes
5
replies
4.0k
views
plink2 reorder alleles by fasta reference
PLINK2
updated 4.5 years ago by 11k • written 4.5 years ago by ▴ 110
0
votes
7
replies
3.7k
views
Diffbind:dba.plotProfile error: each range must have an end that is greater or equal to its start minus one
Diffbind Bioconductor R
updated 4.4 years ago by 45k • written 4.5 years ago by • 0
1
vote
2
replies
1.1k
views
aligning reads against shorter region
alingment Bowtie2
4.5 years ago by Juke34 9.3k
0
votes
8
replies
3.1k
views
Logfold change (Limma Package) in methylation association studies
limma logfoldchange
updated 17 months ago by ★ 3.1k • written 4.5 years ago by ▴ 10
0
votes
0
replies
1.3k
views
How to run coverage2cytosine
Bismark coverage2cytosine DNA-methylation
4.5 years ago by linelr ▴ 40
0
votes
0
replies
1.4k
views
Error in (1 - h) * qs[i] : non numeric argument to binary operator
Rstudio
updated 4.5 years ago by 45k • written 4.5 years ago by • 0
1
vote
1
reply
975
views
Job: BIG DATA MANAGER AND BACK-END DEVELOPER (M/W)
DATA
updated 4.5 years ago by 45k • written 4.5 years ago by • 0
0
votes
0
replies
764
views
How to generate a file where we get the list of common Genes expressed in each combination in a venn diagram
venndiagram R DEG
4.5 years ago by aka ▴ 10
2
votes
3
replies
1.4k
views
What is the minimum read lenght to filter in modern samples?
minimum lenght DNA modern read
updated 4.5 years ago by 154k • written 4.5 years ago by • 0
0
votes
3
replies
1.4k
views
Identifying samples from COSMIC/cBioportal etc with only a specific driver mutation
cancer genomics
updated 4.4 years ago by 45k • written 4.5 years ago by • 0
0
votes
3
replies
1.7k
views
How to rename the fasta header in a multifasta file
fasta seqkit
updated 4.5 years ago by 21k • written 4.5 years ago by ▴ 80
0
votes
0
replies
996
views
Job: Junior Chemical Engineer with Techno-Economic Assessment Skills at DTU Biosustain
AspenPlus chemical engineering SuperPro biosustain DTU
4.5 years ago by info ▴ 90
0
votes
1
reply
1.1k
views
genome build for --extract bed1 file in PLINK
build bed plink genome
updated 4.5 years ago by 11k • written 4.5 years ago by • 0
0
votes
0
replies
721
views
Would someone know why unappropriate "genomeSAindexNbases" value causes Segmentation Fault?
Indexing STAR
4.5 years ago by maxdlf12 • 0
1
vote
3
replies
2.4k
views
Custom genome installation in SigProfileMatrixGenerator
genome custom SigProfilerMatrixGenerator
2.6 years ago by Ian 6.1k
1
vote
5
replies
1.5k
views
construction of a database of bacterial genomic and protein sequences
sql database mysql
updated 4.5 years ago by 45k • written 4.5 years ago by ▴ 20
1
vote
3
replies
2.0k
views
organism source of isolation and country source
sequence genome
updated 4.5 years ago by • 0 • written 9.6 years ago by • 0
3
votes
3
replies
3.0k
views
Remove prefix chrom:position before rsIDs
plink regex bim snp
updated 4.5 years ago by 9.0k • written 8.7 years ago by ▴ 30
10
votes
10
replies
4.2k
views
6 follow
How do I make a ComplexHeatmap from this dataframe?
scaling scale heatmap
4.5 years ago by Pratik ★ 1.1k
0
votes
3
replies
2.2k
views
Corrupted dbsnp-vcf?
BCFTOOLS VCF Imputation
4.5 years ago by Filago ▴ 110
0
votes
0
replies
2.1k
views
Class code selection ; GffCompare ; Novel transcript
codes GffCompare Class RNA-Seq StringTie
4.5 years ago by SKY ▴ 60
5
votes
2
replies
1.7k
views
Bedtools intersect, order of input bed files result in different outputs?
bedtools
updated 4.5 years ago by 12k • written 4.5 years ago by ▴ 110
1
vote
4
replies
1.6k
views
Incorrect Gene coordinates in GBFF File
Gene Coordinate GBFF
4.5 years ago by amar.kant20422 • 0
0
votes
1
reply
1.0k
views
Tool to find first stop-codon in a given ORF
python codon ORF stop R
updated 4.5 years ago by 16k • written 4.5 years ago by • 0
1
vote
6
replies
6.3k
views
syntax error near unexpected token `('
script shell
updated 4.5 years ago by 45k • written 4.5 years ago by • 0
1
vote
1
reply
1.4k
views
extract only 5' information of BAM file
BAM
updated 4.5 years ago by 9.0k • written 4.5 years ago by ▴ 10
2
votes
2
replies
1.2k
views
Bacterial metatranscriptomics with DESEQ2?
metatranscriptomics RNA-SEQ
4.5 years ago by shail.nair05 ▴ 20
43
votes
19
replies
15k
views
9 follow
Basic Bam File Annotation
bedtools bam htseq annotation rseqc
4.5 years ago by Jeremy Leipzig 23k
0
votes
0
replies
1.1k
views
high resolution deconvolution problem
cibersort deconvolution rna-seq
4.5 years ago by demoraesdiogo2017 ▴ 120
2
votes
2
replies
1.5k
views
Can I carrying out a WGCNA analysis with multiple traits?
WGCNA
4.5 years ago by Lalaland ▴ 40
4
votes
10
replies
3.5k
views
Sorting of a bam file takes toooo long time
linux bam
updated 2.7 years ago by 45k • written 4.5 years ago by ▴ 30
1
vote
2
replies
1.2k
views
BLASTP local vs website
blastp
4.5 years ago by timothy.kirkwood ▴ 140
0
votes
0
replies
1.7k
views
How to plot rarefaction curves in R using Vegan?
gene richness rarefaction R
4.5 years ago by anikcropscience ▴ 270
0
votes
1
reply
1.6k
views
Can BOLT-LMM_v2.3.2 handle BGEN v3 format data released by UK biobank?
UK Biobank BGEN BOLT-LMM gene genotype
updated 4.5 years ago by • 0 • written 6.3 years ago by ▴ 10
122,199 results • Page 643 of 2444
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Answer: Midpoint rooting IQTREE newick file moves node support around
Answer: Subsetting before QC in Spatial Transcriptomics
Answer: Feature Counts vs Salmon quantification
Comment: Feature Counts vs Salmon quantification
Answer: Can i use orthofinder for small protein datasets and not full proteome?
Comment: Comparison of different RNAseq data sets
Comment: ID unifiying across different datasets
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Comment: Subsetting before QC in Spatial Transcriptomics by Kent ▴ 30
Hi Kevin, Thanks for the detailed explanation. Due to the characteristics of the datasets, we initially used very lenient quality control…
Comment: Midpoint rooting IQTREE newick file moves node support around by Luca Arbore ▴ 10
Thank you very much Kevin, it worked!
Comment: ID unifiying across different datasets by GenoMax 154k
In this case the entry notes that this is likely the product of a pseudogene: https://www.uniprot.org/uniprotkb/Q5VTE0/entry and existence …
Comment: Comparison of different RNAseq data sets by DrSmad ▴ 10
Each lab contributes both control and LPS. Example, for cell line A_lab1 did and analysis on control and LPS-6h. Cell line B_lab2 did contr…
Comment: ID unifiying across different datasets by zizigolu ★ 4.4k
sorry, why some gene names are often lacking though the Uniprot ID is still valid (using biomart)?
Comment: snpEff: Unsupported structural variant types by shpak.max ▴ 70
Unfortunately, while it ran without a problem initially, when I checked the run screen today, I saw the following error message (and unlike…
Comment: ID unifiying across different datasets by GenoMax 154k
You can use the [**ID mapping tool**][1] from UniProt site (third ID did not map from the list above): From To P68104 ENSG0000015…
Answer: The geo samples is not having sentrix id and sentrix position. But this informat by yura.grabovska ▴ 890
Crosspost from related question: https://www.biostars.org/p/9616466/#9616534 ``` ##Using R, illuminaio from Bioconductor library(…
Answer: Finding Sentrix ID in HM450K arrays by yura.grabovska ▴ 890
``` ##Using R, illuminaio from Bioconductor library(illuminaio) temp.idat <- readIDAT(file = "200379120087_R02C02_Grn.idat") tem…
Comment: Can i use orthofinder for small protein datasets and not full proteome? by michael.ante ★ 4.0k
Do you want to compare them by sequence or by function? For the later, you can use e.g. InterProScan, KoFamScan.
Answer: Can i use orthofinder for small protein datasets and not full proteome? by dthorbur ★ 3.2k
If you're just using the tool for clustering purposes, I think OrthoFinder might be a little clunky and would recommend using something lik…
Comment: ID unifiying across different datasets by zizigolu ★ 4.4k
Thank you; The problem is let's say in the protein ID column I see `Q5VTE0;P68104;Q05639` here I am sure I should get which `ENSG` for eac…
Comment: How to improving 2-Nucleotide RNA-seq Mapping Accuracy by 2411110159 • 0
Since we do not have real data yet, I tried to simulate this using strand-specific RNA bisulfite-seq reads (C to T). Read1 corresponds to t…
Comment: How to Use Biostars, Part-I: Questions, Answers, Comments and Replies by 2411110159 • 0
Very helpful!
Comment: direct RNA long-reads alignment against reference genome by frarodmar17 • 0
Okay, thanks! I removed reads.fa and I used the index created with minimap2 in .mmi format. Is this correct?
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