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I believe you are right. My mistake! I am confusing NES with upregulation/downregulation, I think. It is a little confusing.
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try log2FoldChange * -10logpvalue and if possible can you cross check it with the library in the link I sent earlier. How can you tell that…
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I used featureCounts to get gene-level counts from RNA-seq BAMs, then ran DESeq2 to get log2FoldChanges and adjusted p-values. Then I took …
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no, walk me through your process and let's check how did you end up with different regulation. For visualization, you can check some ideas …
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Ca you elaborate the steps that you did for your analysis. For all just to make sense or to establish the context of your analysis, make su…
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What are your thoughts of first Mapping my target reads at say 95% or higher first, then doing host removal of the remaining reads, and the…
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