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1,000 results • Page 4 of 20
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6
votes
7
replies
1.1k
views
Forum: Generic avatars, not gravatars?
technical avatar
2.1 years ago by Michael 54k
5
votes
0
replies
2.9k
views
Forum: Correct method of Merging/Integrating multiple single cell dataset using Seurat
seurat scrnaseq
2.1 years ago by rohitsatyam102 ▴ 850
0
votes
0
replies
539
views
Forum: Phylogenomics in the presence of gene flow
hybridisation introgression gene-flow Phylogenomics
2.1 years ago by jeronimocid93 • 0
2
votes
2
replies
1.0k
views
Forum: Bioinformatician Jobs: Remote Flexible is possible?
remote-jobs bioinformatician
updated 22 months ago by 43k • written 2.1 years ago by ▴ 20
15
votes
11
replies
4.7k
views
9 follow
Forum: Methodological problems are extremely common for enrichment analysis - beware the pitfalls before you publish
GSEA DAVID enrichment-analysis -geneontology
updated 11 months ago by 43k • written 2.1 years ago by ★ 1.9k
0
votes
0
replies
478
views
Forum: CIRCexplorer2 - Getting Count Matrix
CIRCexplorer2 counts circRNA
2.1 years ago by akamonto • 0
3
votes
5
replies
1.0k
views
Forum: 1000 genomes data?
DNA 1000genomes variation
updated 2.1 years ago by 43k • written 2.1 years ago by ▴ 520
0
votes
0
replies
529
views
Forum: What kind of analysis automation or pipeline is most needed in genomic data analysis right now?
dna genome analysis programming statistics
updated 2.2 years ago by 82k • written 2.2 years ago by • 0
29
votes
10
replies
6.5k
views
10 follow
Forum: Interesting/useful/beautiful bio sequence viz tools
viz python visualisation
updated 14 months ago by 43k • written 6.1 years ago by 21k
3
votes
6
replies
2.2k
views
Forum: A Css For Small Screen Devices?
meta
updated 14 months ago by 43k • written 12.0 years ago by ★ 3.6k
12
votes
6
replies
2.9k
views
Forum: M.S. Bioinformatics and Computational Biology: Will I be able to find a job after graduation? I'm worried...
career Masters Graduation
updated 22 months ago by 43k • written 2.2 years ago by ▴ 20
0
votes
3
replies
932
views
Forum: Project Topics on bioinformatic
Data-analysis Coding Molecular-biology
updated 11 months ago by 43k • written 2.2 years ago by • 0
0
votes
4
replies
1.2k
views
Forum: Declining multithreading Diamond performance on decent dual AMD Epyc 7643 server
diamond performance EPYC 7643 multithreading AMD poor
updated 2.2 years ago by 142k • written 2.2 years ago by ▴ 10
3
votes
1
reply
925
views
Forum: How to download multiple .gz files from Ensembl Protists database
wget protist ensembl
updated 11 weeks ago by ★ 1.7k • written 2.2 years ago by ▴ 850
3
votes
4
replies
2.5k
views
Forum: Bioinformatics Research Topics/Areas that Everyone should take a look / Current Trends
research-area postgraduates
updated 15 months ago by 43k • written 2.2 years ago by ▴ 10
1
vote
0
replies
558
views
Forum: Continue exploring Bioinformatics and improving Bioinformatics Skills
postgraduate bioinformatics-skills
updated 15 months ago by 43k • written 2.2 years ago by ▴ 10
0
votes
1
reply
769
views
Forum: ensemble VEP server is down
VEP ensemble
updated 2.2 years ago by 82k • written 2.2 years ago by • 0
15
votes
10
replies
2.0k
views
7 follow
Forum: Tips and tricks to improve data visualization in bioinformatics
visualization ggplot2 plot
updated 2.2 years ago by ★ 27k • written 2.2 years ago by ★ 2.9k
3
votes
8
replies
1.6k
views
Forum: What are the pain points of using Genomics on the cloud today?
datasharing pipelines workspaces cloud genomics
updated 2.3 years ago by 22k • written 2.3 years ago by ▴ 520
0
votes
0
replies
557
views
Forum: UniProt survey about programmatic access
documentation api survey uniprot
updated 2.3 years ago by 161k • written 2.3 years ago by ★ 2.4k
4
votes
9
replies
3.0k
views
Forum: 100% variance explained on one PC in DESeq2 PCA?
RNA-Seq DESeq2
2.3 years ago by melatoninixo ▴ 10
17
votes
14
replies
3.3k
views
Forum: Asking for feedback on a Python library for computing alignments
alignment Python
updated 11 months ago by ▴ 220 • written 2.3 years ago by ▴ 60
0
votes
1
reply
642
views
Forum: Statistical methods Books Recommendation
Books Recommendation
updated 2.3 years ago by 82k • written 2.3 years ago by ▴ 110
0
votes
0
replies
472
views
Forum: Is there any limitation for number of samples in AUC analysis ?
curves ROC
2.3 years ago by sabaghianamir70 ▴ 70
6
votes
5
replies
4.0k
views
6 follow
Forum: How is the job outlook in 2020 ?
career outlook
updated 22 months ago by 43k • written 5.9 years ago by • 0
6
votes
5
replies
1.2k
views
6 follow
Forum: Usability of depiction of individual reads in genome browser visualization
visualization browser genome
updated 2.3 years ago by 100k • written 2.3 years ago by ▴ 600
4
votes
7
replies
1.8k
views
Forum: Data Base management system for data lake: Cassandra vs MongoDB vs Apache HBase
HBase Cassandra MongoDB Data-Lake
updated 2.3 years ago by ★ 3.2k • written 2.3 years ago by ▴ 120
9
votes
8
replies
5.2k
views
9 follow
Forum: insert figure and code in the post of Biostars?
meta biostars
updated 14 months ago by 43k • written 8.9 years ago by ★ 2.2k
7
votes
2
replies
1.6k
views
Forum: What are the most influential Bioinformatics/Computational Biology papers/methods/discoveries of 2021?
snp papers survey
updated 15 months ago by 43k • written 2.3 years ago by ★ 1.4k
0
votes
1
reply
773
views
Forum: What are the most important papers/methods in Genomics/Bioinformatics of 2021?
publications
updated 10 months ago by 43k • written 2.3 years ago by ★ 2.5k
24
votes
11
replies
4.2k
views
7 follow
Forum: In 2022 is Perl and Ruby programming languages still useful for bioinformatics?
ruby perl
updated 2.4 years ago by 8.6k • written 2.4 years ago by • 0
0
votes
4
replies
868
views
Forum: Terms (like atlas, map, and archive) on database description
database
2.4 years ago by bioinformaticsBoy ▴ 10
2
votes
2
replies
797
views
Forum: How much are companies willing to pay for microbiome data?
NGS metagenomics microbiome
2.4 years ago by maa4618 • 0
19
votes
1
reply
4.5k
views
Forum: Best programming language for bioinformatics - R Language
programming R
updated 14 months ago by 82k • written 3.2 years ago by ▴ 420
6
votes
7
replies
1.4k
views
Forum: How to change my email address
meta biostars
updated 2.4 years ago by • 0 • written 3.2 years ago by ▴ 50
9
votes
11
replies
3.4k
views
6 follow
Forum: 2021: state and usage of compressed file standards better than BAM and FASTQ
bam compression fastq
updated 22 months ago by ▴ 120 • written 3.0 years ago by ★ 5.3k
10
votes
3
replies
4.6k
views
Forum: Trimming tools - your experience please?
trimming
updated 2.4 years ago by 19k • written 2.4 years ago by ▴ 20
8
votes
9
replies
1.8k
views
Forum: Most useful public genomic/genetic databases/tools/applications
public-data genomics Genetics open-access
updated 15 months ago by 43k • written 2.4 years ago by ▴ 520
74
votes
14
replies
30k
views
12 follow
Forum: Bioinformatics Consulting Thoughts
consulting
updated 22 months ago by 43k • written 13.9 years ago by 4.5k
6
votes
3
replies
1.2k
views
Forum: Computational Biology Conference
biology computational science research conference
updated 2.5 years ago by 47k • written 2.5 years ago by ▴ 790
0
votes
1
reply
735
views
Forum: UK supercomputer Cambridge-1 vs SDSC vs TACC
SDSC TACC HPC Cambridge-1
updated 2.5 years ago by 142k • written 2.5 years ago by ★ 9.4k
0
votes
1
reply
722
views
Forum: Official/centralized/designated genetic/biological knowledge graph?
knowledge graph
updated 2.5 years ago by 8.7k • written 2.5 years ago by • 0
0
votes
0
replies
543
views
Forum: Targeted sequencing and phylogenetics
SC sequencing exome gene_panel
updated 15 months ago by 43k • written 2.5 years ago by • 0
2
votes
7
replies
3.1k
views
Forum: M1 Pro/Max and future
Max M1 M2 Pro Mac
updated 2.5 years ago by 142k • written 2.5 years ago by ▴ 20
21
votes
8
replies
7.5k
views
Forum: Is there ever a good reason to use a log transformation instead of Box-Cox?
data skew transformation power
updated 2.5 years ago by 100k • written 2.5 years ago by ★ 27k
6
votes
2
replies
789
views
Forum: Biology undergraduate looking for mentor
computational-biology Biology mentor Toronto
updated 2.5 years ago by 43k • written 2.5 years ago by • 0
1
vote
7
replies
1.4k
views
Forum: Does it matter where I get my PhD? I am currently a masters student.
advice PhD Masters
2.5 years ago by nickroseae ▴ 10
16
votes
7
replies
2.0k
views
Forum: Will a user #100000 get Tesla Model 3?
milestone
updated 2.5 years ago by 100k • written 2.6 years ago by ★ 27k
2
votes
8
replies
1.9k
views
Forum: Non biology & computer professional interested in bioinformatics
computer-science machine-learning
updated 14 months ago by 43k • written 2.6 years ago by • 0
0
votes
0
replies
642
views
Forum: PhD Bioinformatics Remote positions
PhD
updated 22 months ago by 43k • written 2.6 years ago by ▴ 30
1,000 results • Page 4 of 20
Recent Votes
Answer: Searching for gene in multiple genomes
Comment: RNA velocity for smart-seq2 dataset
Answer: RNA velocity for smart-seq2 dataset
Answer: RNA velocity for smart-seq2 dataset
Comment: Help with choosing a model species for Augustus for a de novo assembled genome.
A: After read mapping, count exons or genes?
After read mapping, count exons or genes?
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Recent Replies
Comment: creating batch colum for batch correction by Expert ▴ 10
Thank you for your response. These samples were collected from the same patient at different time points(day 0, 8 and 18) and these are ind…
Comment: creating batch colum for batch correction by ATpoint 82k
Not sure I follow. Can you first of all describe which comparisons you want to make, pretending there was no batch effect at all. Write dow…
Comment: Pindel Segmentation Fault Error by Ruqaiya • 0
This the tool still problematic?
Comment: Segmentation error while using a tool by Ruqaiya • 0
Thank you for the advice, i'll keep that in mind.
Comment: Segmentation error while using a tool by Ruqaiya • 0
I am trying to reproduce some bioinformatics data from a research paper-[this paper][1] as i was asked to work on an MRSA bioinfo project, …
Answer: Segmentation error while using a tool by Mensur Dlakic ★ 27k
Most likely you didn't do anything wrong. Going by your previous post that you have only 8 GB of RAM, the most likely reason is the lack of…
Comment: Segmentation error while using a tool by Thanujay S • 0
Hey @Ruqaiya! Can you please give more details on why smalt is opted here? According to what I can see, the tool has become obsolete! Why …
Comment: Extracting mutation status from MAF files - TCGA by Thanujay S • 0
Hey! Can you explain the question further? What have you tried?
Comment: Downloading older version of a tool by Ruqaiya • 0
I tried the 2nd option only. I got the files of older version from the author but that version isn't working on my WSL, it's showing Segmen…
Comment: filtering before dada2 by GenoMax 142k
> I encountered a significant decrease in the percentage of merged reads. You can check with `bbmerge.sh` from BBMap suite to see how many…
Comment: HCL database download by GenoMax 142k
Isn't the download link available above the plot: http://bis.zju.edu.cn/HCL/data/DGE/Adult-Transverse-Colon1_dge.txt.gz
Comment: fastq screen aligner no specified. by GenoMax 142k
You need to change this configuration file to point it to the location where the aligner executable can be found. So as an example followi…
Answer: Design matrix Differential expression analysis by Gordon Smyth ★ 7.1k
The expression levels do not change but the way that you have parametrized the expression levels does change. The two design matrices give…
Comment: The GDC Legacy Archive is retiring soon. by lcordeiro ▴ 40
Hi Zhenyu, do you happen to know how I can download metadata for some of the legacy files? I downloaded several IDATs from the legacy data …
Answer: Force PLINK2 to neglect chrX as the sex chromosome by chrchang523 10k
(cross-posted from https://groups.google.com/g/plink2-users/c/Qphx_6BpPII ) You need to use --chr-set, not --allow-extra-chr, to specify…
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