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460 results • Page 3 of 10
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36
votes
34
replies
2.8k
views
9 follow
Forum: New to bioinformatics.....
gene
updated 11 months ago by 43k • written 6.1 years ago by • 0
3
votes
4
replies
2.8k
views
Forum: hands on resources for high school students with advanced CS skills
informatics education high-school
updated 11 months ago by 43k • written 5.7 years ago by 4.2k
1
vote
13
replies
2.8k
views
Forum: Bioinformatics computer upgrade help
computer
updated 10 months ago by 43k • written 3.8 years ago by ▴ 50
2
votes
3
replies
2.8k
views
Forum: What is the most popular programming language used in bioinformatics?
programming-languages
updated 11 months ago by 43k • written 6.9 years ago by ▴ 70
7
votes
6
replies
2.8k
views
7 follow
Forum: Should I specialise in bioinformatics?
career
updated 11 months ago by 43k • written 5.5 years ago by ▴ 10
8
votes
4
replies
2.7k
views
Forum: SNP calling in 2018
variant gatk SNP
updated 11 months ago by 43k • written 6.2 years ago by ▴ 640
31
votes
41
replies
2.7k
views
12 follow
Forum: Question regarding journal publications
publications journals
updated 10 months ago by 43k • written 4.2 years ago by ▴ 40
34
votes
8
replies
2.7k
views
9 follow
Forum: Bioinformatician, a jack of all trades, but in the eye of the CV-beholder a master of none? How can your CV reflect the diverse skills that you have …
cv industry career
updated 10 months ago by 43k • written 4.5 years ago by ▴ 300
29
votes
18
replies
2.7k
views
12 follow
Forum: what are the big questions in bioinformatics field nowadays
genome
updated 10 months ago by 43k • written 4.2 years ago by ▴ 20
12
votes
5
replies
2.6k
views
Forum: We Need Your Input! Help Get Information For The Informatics Community And Get A Free Gift Card!
algorithm ngs
updated 10 months ago by 43k • written 10.9 years ago by ▴ 30
2
votes
2
replies
2.6k
views
Forum: What are the challenges faced in bioinformatics research
sequencing alignment
updated 11 months ago by 43k • written 6.9 years ago by ▴ 10
15
votes
24
replies
2.6k
views
7 follow
Forum: Airport.bio: First class ticket to any biological database in the world
RNA-Seq ChIP-Seq SNP
updated 11 months ago by 43k • written 6.0 years ago by ▴ 350
0
votes
4
replies
2.6k
views
Forum: Quantum Computing in Genomics
genome next-gen RNA-Seq
updated 11 months ago by 43k • written 6.2 years ago by ▴ 350
3
votes
4
replies
2.6k
views
Forum: How long does it take to build a pipeline?
next-gen self-learning
updated 11 months ago by 43k • written 6.6 years ago by ▴ 220
3
votes
27
replies
2.5k
views
7 follow
Forum: What server do you use?
HPC AWS
updated 11 months ago by 43k • written 5.8 years ago by ★ 1.9k
2
votes
3
replies
2.5k
views
Forum: R books with Quantitative Genetics examples?
R
updated 11 months ago by 43k • written 6.2 years ago by • 0
14
votes
6
replies
2.5k
views
6 follow
Forum: Bioinformatics experience in programming
python R
updated 11 months ago by 43k • written 5.7 years ago by ▴ 20
43
votes
37
replies
2.5k
views
7 follow
Forum: Checking the quality and reliability in bioinformatics
reproducibility
updated 11 months ago by 43k • written 6.6 years ago by ★ 4.3k
21
votes
11
replies
2.5k
views
6 follow
Forum: Rust bioinformatics projects ideas
projects scRNA-seq RNA-seq Rust
updated 5 months ago by 22k • written 13 months ago by ▴ 150
18
votes
12
replies
2.5k
views
6 follow
Forum: why GATK makes things more complicated ?
genomics
updated 11 months ago by 43k • written 5.2 years ago by ▴ 280
6
votes
6
replies
2.5k
views
Forum: Trouble finding job with MS in Bioinformatics
next-gen
updated 11 months ago by 43k • written 5.9 years ago by ▴ 10
6
votes
4
replies
2.5k
views
Forum: Ru/Read Until in Nanopore sequencers
Oxford-Nanopore alignment sequencing
updated 10 months ago by 43k • written 4.2 years ago by ★ 1.7k
8
votes
6
replies
2.4k
views
Forum: How do you organize sequence data (FASTQs)?
RNA-Seq sequencing
updated 11 months ago by 43k • written 6.0 years ago by ▴ 280
11
votes
9
replies
2.4k
views
7 follow
Forum: Feature Selection and Dimensionality Reduction in 10X scRNA-seq data
software-error pca scRNA-seq
updated 11 months ago by 43k • written 4.3 years ago by 82k
12
votes
14
replies
2.4k
views
8 follow
Forum: Recovering bam files after unknown deletion in the storage
photorec bam sequencing
written 4.9 years ago by ▴ 70
8
votes
15
replies
2.4k
views
7 follow
Forum: How to identify your analytic data is true?
RNA-Seq ChIP-Seq next-gen-sequencing
updated 11 months ago by 43k • written 6.7 years ago by ▴ 80
3
votes
1
reply
2.4k
views
Forum: Pipeline suggestions for GO & pathway analysis for species without reference genome
next-gen RNA-Seq de-novo
updated 11 months ago by 43k • written 6.9 years ago by ▴ 960
18
votes
11
replies
2.4k
views
8 follow
Forum: Create a File format to store Variant
hgvs json variant
updated 11 months ago by 43k • written 5.8 years ago by ★ 2.4k
5
votes
5
replies
2.4k
views
Forum: BCL files as deliverables from a sequencing center
core-facility service-provider
updated 11 months ago by 43k • written 4.9 years ago by 5.2k
9
votes
14
replies
2.4k
views
Forum: MS Bioinformatics Project
assembly sequencing alignment R SNP
updated 11 months ago by 43k • written 6.1 years ago by ▴ 10
7
votes
8
replies
2.4k
views
Forum: Virus Genome Length and GC Content of SARS-COV-2 causing COVID-19
sequence genome
updated 10 months ago by 43k • written 4.1 years ago by ▴ 30
15
votes
10
replies
2.3k
views
6 follow
Forum: help identifying bioinformatics operations tools
database next-gen operations genomics
updated 11 months ago by 43k • written 5.4 years ago by ▴ 80
11
votes
9
replies
2.3k
views
Forum: Survey: help define Gencode and NCBI primary transcripts
refseq ensembl gencode ncbi transcript
updated 11 months ago by 43k • written 6.1 years ago by 23k
34
votes
5
replies
2.3k
views
Forum: what we should reply when we are asked do you have any question?
career interview
updated 11 months ago by 43k • written 6.9 years ago by ★ 4.3k
6
votes
5
replies
2.3k
views
Forum: Maintaning internal or private installation of Biostar or a similar Q&A site
Biostars
6 months ago by tshtatland ▴ 190
6
votes
1
reply
2.3k
views
Forum: How to become employable in Bioinformatics, starting with degree and experience in CS/Software Engineering?
computer-scientist software-engineer
updated 11 months ago by 43k • written 5.7 years ago by • 0
28
votes
15
replies
2.2k
views
12 follow
Forum: Should bioinformaticians learn the scientific names of plants and animals?
sequence
updated 11 months ago by 43k • written 5.8 years ago by ▴ 10
30
votes
16
replies
2.2k
views
9 follow
Forum: Which programming langauge shall I start as a beginner in Bioinformatics
programming-language single-cell
updated 10 months ago by 43k • written 4.0 years ago by • 0
0
votes
1
reply
2.2k
views
Forum: How's the bioinformatics engineering path? How to become a bioinformatics engineer?
machine-learning Bioinformatics-engineer
updated 10 months ago by 43k • written 4.0 years ago by ▴ 60
4
votes
2
replies
2.2k
views
Forum: wet-lab vs dry-lab scientists
cv language
updated 10 months ago by 43k • written 4.2 years ago by 13k
10
votes
6
replies
2.2k
views
Forum: How to acknowledge in the paper a reference genome that hasn't been published yet?
reference paper
updated 11 months ago by 43k • written 5.7 years ago by ▴ 140
10
votes
7
replies
2.2k
views
Forum: How to learn bioinformatics?
learning
updated 3 months ago by ★ 1.3k • written 23 months ago by ▴ 20
0
votes
4
replies
2.2k
views
Forum: Multiple Sequence Alignment Applications
snp
updated 11 months ago by 43k • written 4.8 years ago by • 0
31
votes
16
replies
2.2k
views
8 follow
Forum: What is in your opinion the current state-of-the-art sequencing platform for genomic assembly (Nov 2019)
next-gen-sequencing assembly genome
updated 10 months ago by 43k • written 4.5 years ago by ★ 5.1k
15
votes
9
replies
2.2k
views
6 follow
Forum: [Opinion] - What alignment software do you use?
next-gen alignment
updated 11 months ago by 43k • written 6.1 years ago by ▴ 30
7
votes
4
replies
2.2k
views
Forum: How hard it is to get a bioinformatics degree in one country but find a career in another country?
career Masters
updated 11 months ago by 43k • written 5.9 years ago by ▴ 10
1
vote
6
replies
2.1k
views
Forum: shotgun sequencing and clone-based sequencing
sanger-sequencing
updated 11 months ago by 43k • written 6.6 years ago by • 0
14
votes
10
replies
2.1k
views
Forum: WGBS alignment with BitMapperBS
BitMapperBS bismark
updated 11 months ago by 43k • written 4.8 years ago by ★ 9.4k
24
votes
26
replies
2.1k
views
6 follow
Forum: Organizing a Bioinformatics Conference ?
meeting conference
updated 11 months ago by 43k • written 6.4 years ago by 161k
3
votes
6
replies
2.1k
views
Forum: Choosing the appropriate test for differential analysis: Limma or Mann-Whitney (with BH correction)? Test for normality
R Shapiro-Wilk Limma Mann-Whitney
updated 10 months ago by 43k • written 4.0 years ago by ▴ 40
460 results • Page 3 of 10
Recent Votes
Answer: Source other conda environments in a nextflow pipeline when nextflow itself is i
How do I find out the read lenght of a fastq file?
Calculate Allele balance by sample
Comment: how to combine multiple RNAseq count files into a single dataframe in R and unix
Answer: Is there a tool that sorts gtf files?
Answer: gvcf joint calling
Answer: Heatmap and rna-seq
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Popular Question to rohitsatyam102 ▴ 850
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Recent Replies
Comment: gvcf joint calling by Jeremy Leipzig 22k
can you show us an exonic position in your VCF file that is all `./.`?
Comment: Help understanding how KEGG Ortholog `K00004 ` has 3 ECs associated with it (EC: by O.rka ▴ 710
Thank you. This answers my question. The reason I am asking is because I’m trying to do set enrichment analysis with BRENDA pathways using…
Answer: Source other conda environments in a nextflow pipeline when nextflow itself is i by colindaven 6.4k
I used to use nextflow in a conda env. That requires the env to be active when a pipeline is started. Also I have productive pipelines whic…
Comment: different FeatureCounts output for the same data by Istvan Albert 100k
just to clarify, it is not that the program algorithm works differently but the meaning of the flags changed; before -p was sufficient to…
Comment: how to combine multiple RNAseq count files into a single dataframe in R and unix by BioinfGuru ★ 1.7k
Thanks Ram. Using merge maxed out my ram on a large list, but your suggestion directed me to purrr::reduce which works great.
Comment: ScRNA data question by starswillfade ▴ 10
features <- SelectIntegrationFeatures(object.list = merged_dat) data.anchors <- FindIntegrationAnchors(object.list = merged_dat, …
Comment: gvcf joint calling by zihanss • 0
Thank you for your help! I really appreciate it! And you know, the merged WES gVCF files still have "NA" loci. For such cases, I am quite …
Comment: Correct way to compare multiple treaments between RNA-Seq samples using edgeR? by Guille • 0
Thank you for your answer! The MDS plot seems to group most treatment groups close-by, so I'm starting to suspect the effect of treatment …
Answer: Help understanding how KEGG Ortholog `K00004 ` has 3 ECs associated with it (EC: by Mensur Dlakic ★ 27k
They say that we remember better things we figured out on our own, rather than things we were taught. You were literally two clicks away fr…
Comment: Heatmap and rna-seq by dsull ★ 5.8k
https://maayanlab.cloud/clustergrammer/ It's a web-based tool (can also be a python jupyter widget) that I find useful for exploring a pat…
Answer: Limma Analysis Agilent Microarray Data (GPL1708) by Gordon Smyth ★ 7.0k
There is an Agilent array case study in the limma User's Guide, which you might find helpful and somewhat simpler. I don't recommend col…
Answer: Correct way to compare multiple treaments between RNA-Seq samples using edgeR? by Gordon Smyth ★ 7.0k
The comparison you've done seems exactly right to test whether treatment 2 modifies or enhances the effect of treatment 1. Have you exam…
Answer: How to use limma to find differentially expressed genes in response to a continu by Gordon Smyth ★ 7.0k
There's no need for form a contrast because the score variable is already in the model. A continuous variable is its own contrast. Just run…
Comment: Create a new bed file with all pairwise combinations between two other bed files by J ▴ 10
Oh wow, bedops closest-features, how did I overlook that!! I didn't know about it; thank you! Your awk script is beautiful. This worked per…
Comment: Create a new bed file with all pairwise combinations between two other bed files by J ▴ 10
Thank you Pierre! I'll try this out with my full data set.
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