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14
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2.1k
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7 follow
Forum: What's the general view on point & click bioinformatics for routine analyses?
ngs RNA-Seq next-gen-sequencing
13 months ago by Simon ▴ 40
9
votes
14
replies
2.5k
views
Forum: [survey] Have your say on Bioinformatics and NGS training
next-gen training
updated 13 months ago by 43k • written 7.5 years ago by ▴ 60
19
votes
14
replies
2.2k
views
Forum: What is the amount of sequencing data produced annually?
data research sequencing
updated 8 months ago by 22k • written 8 months ago by ▴ 70
9
votes
14
replies
2.5k
views
6 follow
Forum: What are the pain points in genomic variant interpretation/annotation processes?
analysis variant
updated 2.8 years ago by ★ 1.2k • written 3.0 years ago by ▴ 90
12
votes
14
replies
2.5k
views
8 follow
Forum: Recovering bam files after unknown deletion in the storage
photorec bam sequencing
written 4.9 years ago by ▴ 70
15
votes
14
replies
11k
views
6 follow
Forum: How Should I Go About Preparing For My Bioinformatics Phd Admissions Interview?
phd
updated 14 months ago by 43k • written 10.2 years ago by ▴ 150
28
votes
14
replies
6.9k
views
9 follow
Forum: How Do You Use Cloud Computing For Bioinformatics In 2013?
cloud
updated 14 months ago by 43k • written 10.9 years ago by 11k
47
votes
14
replies
5.2k
views
Forum: Was FASTA ever popular?
FASTA alignment
updated 13 months ago by 43k • written 7.6 years ago by 13k
22
votes
14
replies
9.2k
views
6 follow
Forum: Too late to switch to Bioinformatics?
education career
updated 14 months ago by 43k • written 10.0 years ago by ▴ 30
17
votes
14
replies
3.4k
views
Forum: Asking for feedback on a Python library for computing alignments
alignment Python
updated 11 months ago by ▴ 220 • written 2.3 years ago by ▴ 60
14
votes
14
replies
1.9k
views
6 follow
Forum: How do you process your reference data? (in genomic, metabolomic, transcriptomic, proteomic?)
OMICS Databanks
updated 13 months ago by 43k • written 7.5 years ago by ▴ 40
5
votes
14
replies
2.1k
views
Forum: immediate help needed for genome sequence analysis of bacteria
genome miseq webinar paired-end
updated 12 months ago by 43k • written 7.1 years ago by • 0
17
votes
14
replies
3.6k
views
Forum: Biostar Release 1.2.17 (Updated Feb 18, 2013): Speed Optimizations
biostars
updated 15 months ago by 43k • written 11.3 years ago by 100k
13
votes
14
replies
2.3k
views
Forum: NGS data analysis
NGS biostatistics
updated 13 months ago by 43k • written 8.2 years ago by ▴ 760
4
votes
14
replies
1.9k
views
Forum: Schema recommendation for a gene sequencing database
clinical-genetics database
13 months ago by Ram 43k
8
votes
14
replies
2.8k
views
Forum: Portal of choice for literature commenting
literature
updated 2.3 years ago by 43k • written 9.7 years ago by ★ 1.9k
9
votes
14
replies
2.9k
views
Forum: Bookmark Questions Feature For Biostar
meta
updated 15 months ago by 43k • written 11.1 years ago by ★ 1.4k
28
votes
14
replies
8.4k
views
8 follow
Forum: Should I work first in a Bioinformatics company or get a Ph. D.?
Biochemistry PhD career
updated 13 months ago by 43k • written 8.1 years ago by ▴ 20
20
votes
14
replies
2.2k
views
6 follow
Forum: Reuse of publicly available datasets
publication RNA-Seq sequencing
updated 13 months ago by 43k • written 7.3 years ago by ▴ 10
73
votes
14
replies
4.3k
views
12 follow
Forum: Things you wish you knew when entering the bioinformatics field
pitfalls advice
updated 11 months ago by 43k • written 3.7 years ago by ★ 16k
3
votes
14
replies
2.1k
views
6 follow
Forum: Search for gene variants
next-gen
updated 12 months ago by 43k • written 5.8 years ago by 8.3k
14
votes
14
replies
2.7k
views
7 follow
Forum: Bioinformatics startup market analysis
startup
written 3.1 years ago by ▴ 30
17
votes
14
replies
2.0k
views
10 follow
Forum: What would be the trend in next few years in NGS era?
NGS sequencing
updated 12 months ago by 43k • written 5.5 years ago by ▴ 800
7
votes
14
replies
2.5k
views
7 follow
Forum: Why isn't GWAS used in oncology?
gwas association oncology studies somatic cancer
updated 21 months ago by 3.9k • written 21 months ago by ▴ 90
32
votes
14
replies
6.8k
views
9 follow
Forum: Pat Schloss of Mothur uses this
uses-this
updated 14 months ago by 43k • written 9.6 years ago by 100k
74
votes
14
replies
30k
views
12 follow
Forum: Bioinformatics Consulting Thoughts
consulting
updated 23 months ago by 43k • written 13.9 years ago by 4.5k
60
votes
14
replies
12k
views
16 follow
Forum: Interesting bioinformatics blogs (2017 edition)
blogs
updated 15 months ago by 43k • written 7.2 years ago by 47k
30
votes
13
replies
3.8k
views
11 follow
Forum: what is your daily must see bioinformatics web site?
learn technology
updated 11 months ago by 43k • written 9.7 years ago by 9.7k
7
votes
13
replies
1.4k
views
Forum: How do you validate and verify your pipeline's software updates?
Validation Verification Quality-Assurance
updated 7 months ago by 43k • written 7 months ago by ▴ 10
21
votes
13
replies
5.3k
views
12 follow
Forum: User Friendly VCF Filtering Tools
vcf variant-calling
updated 13 months ago by 43k • written 8.0 years ago by 6.6k
19
votes
13
replies
2.7k
views
8 follow
Forum: Can bioinformatics Phds be completely or almost completely done remotely?
PhD
updated 20 months ago by 6.6k • written 20 months ago by ▴ 40
32
votes
13
replies
11k
views
10 follow
Forum: What Skills Do You Have To Have As A Phd Graduate In Bioinformatics?
genomics phd
updated 15 months ago by 43k • written 11.8 years ago by ▴ 650
37
votes
13
replies
3.6k
views
6 follow
Forum: Bringing Back Downvote
meta
updated 14 months ago by 43k • written 10.9 years ago by 33k
34
votes
13
replies
6.2k
views
11 follow
Forum: Best Way To Learn Bioinformatics For System Level Programmers.
NGS HPC
updated 14 months ago by 43k • written 10.3 years ago by ▴ 90
31
votes
13
replies
16k
views
8 follow
Forum: Should I Pursue A Bioinformatics Msc?
career
updated 15 months ago by 43k • written 11.3 years ago by ▴ 70
24
votes
13
replies
5.7k
views
6 follow
Forum: The ethics of sci-hub
paywall open-science journals publications
updated 13 months ago by 43k • written 7.9 years ago by 47k
11
votes
13
replies
2.9k
views
Forum: what is the difference between bioinformatician and Postdoc in Bioinformatics
career
updated 13 months ago by 43k • written 7.3 years ago by 9.7k
8
votes
13
replies
2.9k
views
8 follow
Forum: Commercial software for genomics / NGS / bioinformatics
NGS software genomics
updated 20 months ago by • 0 • written 20 months ago by ★ 1.4k
18
votes
13
replies
7.1k
views
7 follow
Forum: Being co-first author for two nature series journals, what kinds of job can I find ?
phd
updated 19 months ago by 43k • written 7.5 years ago by ▴ 90
23
votes
13
replies
2.9k
views
8 follow
Forum: Planning A Change To The Way User Reputation/Rankings Are Computed. Comments/Feedback Sought.
biostars
updated 15 months ago by 43k • written 10.8 years ago by 100k
3
votes
13
replies
2.5k
views
Forum: evaluate RNA extraction based on sequencing
sequencing RNA-Seq
updated 2.1 years ago by 43k • written 9.3 years ago by ▴ 50
19
votes
13
replies
3.1k
views
7 follow
Forum: Has anyone tried the new LFQC compression scheme for FASTQ?
fastq compression
updated 21 months ago by 43k • written 8.5 years ago by 7.4k
19
votes
13
replies
3.9k
views
7 follow
Forum: Are Business Cards Redundant In The Science Industry
industry networking
updated 14 months ago by 43k • written 10.3 years ago by ▴ 30
15
votes
13
replies
4.3k
views
8 follow
Forum: Does a PhD or work experience set you up better to do bioinformatics work in industry?
advice industry phd
updated 4 months ago by 3.9k • written 18 months ago by ▴ 30
28
votes
13
replies
1.5k
views
6 follow
Forum: Suppose you have a sequencer that can read the genome end-to-end. What aspects of bioinformatics will become irrelevant?
future
updated 17 months ago by 43k • written 7.6 years ago by ▴ 40
2
votes
13
replies
2.7k
views
8 follow
Forum: Recommendation required for solution of computation requirements in Genomics field
DataAnalysis NGS Genomics
updated 3.1 years ago by 43k • written 3.1 years ago by ▴ 350
1
vote
13
replies
2.8k
views
Forum: Bioinformatics computer upgrade help
computer
updated 11 months ago by 43k • written 3.9 years ago by ▴ 50
15
votes
13
replies
2.2k
views
8 follow
Forum: Can we consider Bioinformatics as a engineering discipline?
engineering biology
updated 17 months ago by 43k • written 5.2 years ago by ▴ 120
29
votes
13
replies
3.7k
views
6 follow
Forum: Map of bioinformatics or who is bioinformatician.
self-study
updated 13 months ago by 43k • written 7.5 years ago by ▴ 260
28
votes
13
replies
2.7k
views
Forum: Are there any workshops which are tailored to non-beginners/intermediate bioinformatics?
workshop
updated 19 months ago by 43k • written 8.8 years ago by ★ 4.0k
1,000 results • Page 5 of 20
Recent Votes
Answer: Kraken2 database
A: Why gene expression data should be log2 transformed?
Answer: Filter Genome for Specific Sites
Answer: Filter Genome for Specific Sites
Answer: How to find SRA sequences of some fungal whole genome sequences if only Biosampl
The Biostar Herald for Monday, May 20, 2024
Answer: Generating Group/Cluster Lists from fastq files
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Scholar to GenoMax 142k
Popular Question to tothepoint ▴ 800
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Scholar to Pierre Lindenbaum 161k
Recent Replies
Comment: Trimming tool by Ram 43k
Please do a few simple Google searches before asking others for help.
Comment: ICGEB - SLIBTEC NGS Workshop: Won Best Oral Presentation Award by Ram 43k
This post does not fit the theme of this forum.
Comment: ICGEB - SLIBTEC NGS Workshop: Won Best Oral Presentation Award by Ram 43k
Hi, Congratulations but this is not LinkedIn, we are not a place to showcase your professional accomplishments. This does not fall under t…
Comment: Kraken2 Custom Database non-deterministic results by GenoMax 142k
Many (most?) programs related to NGS data analysis produce non-deterministic output (unless they explicitly offer an option to produce dete…
Comment: How to find SRA sequences of some fungal whole genome sequences if only Biosampl by GenoMax 142k
For those samples it appears that raw data was not submitted. Just an assembly. $ esearch -db biosample -query SAMN08009548 | elink -…
Comment: How can I calculate the OS of each patient? by Pedro • 0
**I have already tried this code. listSamples with HNSC cancer and smokers. I need at least one supporting material to find out the survi…
Comment: Filter Genome for Specific Sites by Anita • 0
Great, thank you!
Comment: Filter Genome for Specific Sites by Anita • 0
This is unhelpful and doesn't answer my question.
Comment: How to find SRA sequences of some fungal whole genome sequences if only Biosampl by Harshita • 0
It seems that the authors in this paper have used paired-end sequences only for their analysis, and for that, they would also have used the…
Comment: How to find SRA sequences of some fungal whole genome sequences if only Biosampl by Harshita • 0
Thank you so much for helping me out in this! I have used most of the sequences that are found in this table. But, some samples like the…
Answer: How to find SRA sequences of some fungal whole genome sequences if only Biosampl by GenoMax 142k
Looks like the samples are from this project: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA320483&o=acc_s%3Aa This table has the SR…
Comment: Filter Genome for Specific Sites by Pierre Lindenbaum 161k
> My sites are in an Excel file right now ![enter image description here][1] <!-- was an American educator and academic administrator…
Answer: Filter Genome for Specific Sites by GenoMax 142k
> I have a list of ~1,300 single bp sites Convert your file to plain text [**BED format**][1] (three fields required). Use `bedtools slo…
Comment: How to generate an Upset plot in R to plot the shared variants between cell free by sainavyav22 • 0
It worked, Thank you very much!
Comment: What marks a De-Novo Genome assembly as FAILED? by dthorbur ★ 2.0k
I'm unsure you'll be able to identify whole chromosomes that are not core from illumina reads alone. That might be easier to do with a micr…
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