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78
votes
31
replies
6.8k
views
14 follow
Forum: Do Bad Questions Even Exist?
biostars general education
updated 14 months ago by 43k • written 13.2 years ago by 10k
32
votes
14
replies
6.8k
views
9 follow
Forum: Pat Schloss of Mothur uses this
uses-this
updated 14 months ago by 43k • written 9.5 years ago by 100k
6
votes
2
replies
6.8k
views
Forum: Looking For Articles That Used Multi-Omic Techniques For Personalized Or Familial Clinical Studies
proteomics genomics
updated 14 months ago by 43k • written 10.9 years ago by 18k
83
votes
30
replies
6.8k
views
18 follow
Forum: Optimal design for bioinformatics "lab" space?
design lab-space
updated 22 months ago by 43k • written 9.1 years ago by 18k
20
votes
15
replies
6.8k
views
Forum: How To Analyze Your Own Exome
exome filtering analysis vcf variant
updated 3.1 years ago by 43k • written 10.7 years ago by ▴ 130
14
votes
11
replies
6.8k
views
7 follow
Forum: Do you need a deduplication tool for FASTQ data in fastp?
deduplication fastp
updated 11 months ago by 43k • written 4.9 years ago by ★ 2.5k
18
votes
4
replies
6.8k
views
Forum: Useful Resource To Self-Study Bioinformatics
resource
updated 14 months ago by 43k • written 11.5 years ago by ★ 1.5k
25
votes
9
replies
6.7k
views
Forum: Storage Solutions For Genomic Research Centers
data parallel genomics
updated 14 months ago by 43k • written 10.7 years ago by ▴ 140
9
votes
7
replies
6.7k
views
6 follow
Forum: When applying to a PhD program in Harvard or MIT, how many publications are recommended?
GradSchool Grad Harvard School Application
updated 2.7 years ago by 43k • written 2.9 years ago by • 0
7
votes
5
replies
6.7k
views
Forum: Masters in Bioinformatics for a pharmacy graduate
education masters
updated 14 months ago by 43k • written 9.4 years ago by ▴ 30
57
votes
42
replies
6.7k
views
12 follow
Forum: Why is academic software hard to install?
software-installation
updated 2.3 years ago by 43k • written 9.6 years ago by 33k
13
votes
11
replies
6.7k
views
10 follow
Forum: How Would You Use Open Source Tools For Laboratory Notebook System ?
chemoinformatics
updated 21 months ago by 43k • written 12.7 years ago by ▴ 40
11
votes
7
replies
6.6k
views
Forum: Using Graphics Processing Units (GPUs) in bioinformatics
algorithm GPU
updated 11 months ago by 43k • written 4.7 years ago by ▴ 310
12
votes
1
reply
6.6k
views
Forum: Robert Edgar of USearch and MUSCLE uses this
uses-this
updated 14 months ago by 43k • written 9.6 years ago by 100k
17
votes
10
replies
6.5k
views
10 follow
Forum: Linearize fasta files
fasta code-golf
updated 2.7 years ago by ▴ 80 • written 5.2 years ago by 16k
47
votes
24
replies
6.5k
views
15 follow
Forum: What's fascinating about Bioinformatics for potential students?
career msc
updated 16 months ago by 43k • written 6.5 years ago by 54k
29
votes
10
replies
6.5k
views
10 follow
Forum: Interesting/useful/beautiful bio sequence viz tools
viz python visualisation
updated 14 months ago by 43k • written 6.1 years ago by 21k
22
votes
2
replies
6.5k
views
Forum: Cole Trapnell of TopHat and CuffLinks uses this
uses-this
updated 14 months ago by 43k • written 9.5 years ago by 100k
11
votes
5
replies
6.5k
views
Forum: Slurm, Son of Grid Engine, Mesos, and Hadoop YARN vs HTCondor and Torque
PBS HPC SDSC Torque
updated 11 months ago by 43k • written 5.8 years ago by ★ 9.4k
13
votes
3
replies
6.5k
views
Forum: Can We Have A Collection Of Interesting Research Topics?
project phd
updated 14 months ago by 43k • written 11.9 years ago by 54k
8
votes
7
replies
6.4k
views
6 follow
Forum: Bioinformatic or bioinformatics?
spelling
updated 11 months ago by 43k • written 6.6 years ago by ▴ 310
16
votes
6
replies
6.4k
views
Forum: Bioinformatic jobs outside academia?
industry
updated 13 months ago by 43k • written 9.3 years ago by ▴ 530
15
votes
0
replies
6.4k
views
Forum: Erik Garrison of FreeBayes uses this
uses-this
updated 14 months ago by 43k • written 9.5 years ago by 100k
52
votes
18
replies
6.3k
views
14 follow
Forum: Do You Feel Good Or Bad About Putting Your Photo At Biostar?
meta biostars
updated 14 months ago by 43k • written 10.6 years ago by ★ 1.1k
16
votes
15
replies
6.3k
views
Forum: Would You Be Interested In Having A Usesthis Like Site For The Bioinformatics Community?
hardware software
updated 14 months ago by 43k • written 10.1 years ago by ▴ 920
3
votes
7
replies
6.3k
views
Forum: Bioinformatics Career As A Work-At-Home Job
career
updated 14 months ago by 43k • written 11.9 years ago by ▴ 60
45
votes
23
replies
6.3k
views
6 follow
Forum: biostar.slack.com: Chat for the biostars community -- [ feel free to join ]
chat slack
updated 15 months ago by 43k • written 6.1 years ago by 104k
72
votes
28
replies
6.3k
views
10 follow
Forum: Bioinformatics commercial services as a risk factor for scientific misconduct
commercial-services ethics misconduct
updated 22 months ago by 43k • written 9.3 years ago by ▴ 90
57
votes
15
replies
6.3k
views
9 follow
Forum: Good practices while dealing with very large datasets
Big-Data Programming
updated 11 months ago by 43k • written 7.0 years ago by ★ 1.2k
29
votes
21
replies
6.3k
views
Forum: PhD vs Field application scientist in industry
career
updated 13 months ago by 43k • written 7.7 years ago by ▴ 80
9
votes
0
replies
6.3k
views
Forum: Rafael Irizarry: Statistics For Genomics Youtube Channel
statistics bioconductor
updated 2.5 years ago by 43k • written 11.3 years ago by 100k
98
votes
41
replies
6.2k
views
17 follow
Forum: I am really pissed off by the bioinformatics software world. Do/can we have a better solution?
software-error next-gen-sequencing
updated 13 months ago by 43k • written 7.7 years ago by ▴ 510
3
votes
2
replies
6.2k
views
Forum: Best book for learning Next-Generation Sequencing Data Analysis?
ngs
updated 11 months ago by 43k • written 6.2 years ago by ★ 1.2k
134
votes
65
replies
6.1k
views
11 follow
Forum: Bioinformatics vs. the Climate Crisis
RNA-Seq Climate
updated 11 months ago by 43k • written 4.4 years ago by ▴ 880
34
votes
13
replies
6.1k
views
11 follow
Forum: Best Way To Learn Bioinformatics For System Level Programmers.
NGS HPC
updated 14 months ago by 43k • written 10.3 years ago by ▴ 90
36
votes
2
replies
6.1k
views
Forum: Brian Haas of the Trinity Assembler uses this
uses-this
updated 14 months ago by 43k • written 9.5 years ago by 100k
45
votes
35
replies
6.1k
views
12 follow
Forum: looking for a bioinformatics project to do during military rotation
military
updated 22 months ago by 43k • written 6.7 years ago by ▴ 60
67
votes
21
replies
6.1k
views
8 follow
Forum: Meta: Markdown in Biostars (now enabled)
meta
13 months ago by Ram 43k
16
votes
9
replies
6.1k
views
Forum: Reviewing a MOOC: HarvardX - PH525x Data Analysis for Genomics
education mooc
updated 14 months ago by 43k • written 9.9 years ago by 100k
50
votes
20
replies
6.0k
views
18 follow
Forum: Explain bioinformatics to a 10 year old
bioinformatics
updated 14 months ago by 43k • written 8.2 years ago by ★ 1.1k
31
votes
7
replies
6.0k
views
9 follow
Forum: Beginner in Bioinformatics / computational biology field
Bioinformatics Computational-biology
updated 13 months ago by 43k • written 7.9 years ago by ▴ 70
55
votes
16
replies
6.0k
views
8 follow
Forum: Mission Impossible: you have 1 minute to analyze the Ebola Genome
ebola mission-impossible
updated 19 months ago by 43k • written 9.5 years ago by 100k
4
votes
11
replies
6.0k
views
Forum: Any Opinions On Q&A System At Researchgate?
researchgate
updated 14 months ago by 43k • written 11.0 years ago by 3.2k
9
votes
5
replies
6.0k
views
Forum: Can I switch back to wet lab in phd after doing a master in bioinformatics?
biology wet-lab phd
updated 13 months ago by 43k • written 9.0 years ago by ▴ 10
41
votes
27
replies
6.0k
views
8 follow
Forum: Why bioinformaticians need to know programming languages?
Python R Programming
updated 11 months ago by 43k • written 6.9 years ago by ▴ 90
17
votes
12
replies
6.0k
views
Forum: Bioinformatics Tools And Resources Obituary Section
resources
updated 14 months ago by 43k • written 12.0 years ago by 11k
8
votes
0
replies
6.0k
views
Forum: Jonathan Pevsner author of Bioinformatics and Functional Genomics uses this
uses-this
updated 14 months ago by 43k • written 9.6 years ago by 100k
23
votes
6
replies
5.9k
views
Forum: Bioinformatics online course
course teaching
updated 18 months ago by 43k • written 9.0 years ago by ▴ 150
51
votes
16
replies
5.9k
views
11 follow
Forum: What Are The Most Influential Bioinformatics/Computational Biology Papers Of 2011?
papers
updated 15 months ago by 43k • written 12.4 years ago by ★ 2.9k
22
votes
8
replies
5.9k
views
Forum: Sequenceserver: Easily Deploy A Custom, User-Friendly Blast Webserver
web-server blast-database
updated 14 months ago by 43k • written 10.6 years ago by ★ 2.5k
1,000 results • Page 4 of 20
Recent Votes
Answer: Design matrix Differential expression analysis
A: extract dendrogram cluster from pheatmap
extract dendrogram cluster from pheatmap
Answer: Searching for gene in multiple genomes
Comment: RNA velocity for smart-seq2 dataset
Answer: RNA velocity for smart-seq2 dataset
Answer: RNA velocity for smart-seq2 dataset
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Commentator to dsull ★ 6.0k
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Recent Replies
Comment: Design matrix Differential expression analysis by SHN ▴ 40
Thank you for your explanation. I am working on the cell lines and I am investigating the effect of the treatment on the expression level, …
Answer: Issues with Mixture file when using CIBERSORTx by vjanve • 0
I ran into same issue of "duplicated gene symbol(s)": 1: In CIBERSORTxFractions(sigmatrix = sigmatrix, mixture = mixture, : 22292 dup…
Comment: creating batch colum for batch correction by Expert ▴ 10
Thank you for your response. These samples were collected from the same patient at different time points(day 0, 8 and 18) and these are ind…
Comment: creating batch colum for batch correction by ATpoint 82k
Not sure I follow. Can you first of all describe which comparisons you want to make, pretending there was no batch effect at all. Write dow…
Comment: Pindel Segmentation Fault Error by Ruqaiya • 0
This the tool still problematic?
Comment: Segmentation error while using a tool by Ruqaiya • 0
Thank you for the advice, i'll keep that in mind.
Comment: Segmentation error while using a tool by Ruqaiya • 0
I am trying to reproduce some bioinformatics data from a research paper-[this paper][1] as i was asked to work on an MRSA bioinfo project, …
Answer: Segmentation error while using a tool by Mensur Dlakic ★ 27k
Most likely you didn't do anything wrong. Going by your previous post that you have only 8 GB of RAM, the most likely reason is the lack of…
Comment: Segmentation error while using a tool by Thanujay S • 0
Hey @Ruqaiya! Can you please give more details on why smalt is opted here? According to what I can see, the tool has become obsolete! Why …
Comment: Extracting mutation status from MAF files - TCGA by Thanujay S • 0
Hey! Can you explain the question further? What have you tried?
Comment: Downloading older version of a tool by Ruqaiya • 0
I tried the 2nd option only. I got the files of older version from the author but that version isn't working on my WSL, it's showing Segmen…
Comment: filtering before dada2 by GenoMax 142k
> I encountered a significant decrease in the percentage of merged reads. You can check with `bbmerge.sh` from BBMap suite to see how many…
Comment: HCL database download by GenoMax 142k
Isn't the download link available above the plot: http://bis.zju.edu.cn/HCL/data/DGE/Adult-Transverse-Colon1_dge.txt.gz
Comment: fastq screen aligner no specified. by GenoMax 142k
You need to change this configuration file to point it to the location where the aligner executable can be found. So as an example followi…
Answer: Design matrix Differential expression analysis by Gordon Smyth ★ 7.1k
The expression levels do not change but the way that you have parametrized the expression levels does change. The two design matrices give…
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