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1,000 results • Page 4 of 20
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6
votes
7
replies
1.1k
views
Forum: Generic avatars, not gravatars?
technical avatar
2.1 years ago by Michael 54k
5
votes
0
replies
2.9k
views
Forum: Correct method of Merging/Integrating multiple single cell dataset using Seurat
seurat scrnaseq
2.1 years ago by rohitsatyam102 ▴ 850
0
votes
0
replies
541
views
Forum: Phylogenomics in the presence of gene flow
hybridisation introgression gene-flow Phylogenomics
2.1 years ago by jeronimocid93 • 0
2
votes
2
replies
1.0k
views
Forum: Bioinformatician Jobs: Remote Flexible is possible?
remote-jobs bioinformatician
updated 22 months ago by 43k • written 2.1 years ago by ▴ 20
15
votes
11
replies
4.7k
views
9 follow
Forum: Methodological problems are extremely common for enrichment analysis - beware the pitfalls before you publish
GSEA DAVID enrichment-analysis -geneontology
updated 11 months ago by 43k • written 2.2 years ago by ★ 1.9k
0
votes
0
replies
480
views
Forum: CIRCexplorer2 - Getting Count Matrix
CIRCexplorer2 counts circRNA
2.1 years ago by akamonto • 0
3
votes
5
replies
1.0k
views
Forum: 1000 genomes data?
DNA 1000genomes variation
updated 2.2 years ago by 43k • written 2.2 years ago by ▴ 520
0
votes
0
replies
530
views
Forum: What kind of analysis automation or pipeline is most needed in genomic data analysis right now?
dna genome analysis programming statistics
updated 2.2 years ago by 82k • written 2.2 years ago by • 0
29
votes
10
replies
6.5k
views
10 follow
Forum: Interesting/useful/beautiful bio sequence viz tools
viz python visualisation
updated 14 months ago by 43k • written 6.1 years ago by 21k
3
votes
6
replies
2.2k
views
Forum: A Css For Small Screen Devices?
meta
updated 14 months ago by 43k • written 12.1 years ago by ★ 3.6k
12
votes
6
replies
2.9k
views
Forum: M.S. Bioinformatics and Computational Biology: Will I be able to find a job after graduation? I'm worried...
career Masters Graduation
updated 22 months ago by 43k • written 2.2 years ago by ▴ 20
0
votes
3
replies
935
views
Forum: Project Topics on bioinformatic
Data-analysis Coding Molecular-biology
updated 11 months ago by 43k • written 2.2 years ago by • 0
0
votes
4
replies
1.2k
views
Forum: Declining multithreading Diamond performance on decent dual AMD Epyc 7643 server
diamond performance EPYC 7643 multithreading AMD poor
updated 2.2 years ago by 142k • written 2.2 years ago by ▴ 10
3
votes
1
reply
928
views
Forum: How to download multiple .gz files from Ensembl Protists database
wget protist ensembl
updated 11 weeks ago by ★ 1.7k • written 2.2 years ago by ▴ 850
3
votes
4
replies
2.5k
views
Forum: Bioinformatics Research Topics/Areas that Everyone should take a look / Current Trends
research-area postgraduates
updated 15 months ago by 43k • written 2.2 years ago by ▴ 10
1
vote
0
replies
559
views
Forum: Continue exploring Bioinformatics and improving Bioinformatics Skills
postgraduate bioinformatics-skills
updated 15 months ago by 43k • written 2.2 years ago by ▴ 10
0
votes
1
reply
774
views
Forum: ensemble VEP server is down
VEP ensemble
updated 2.2 years ago by 82k • written 2.2 years ago by • 0
15
votes
10
replies
2.0k
views
7 follow
Forum: Tips and tricks to improve data visualization in bioinformatics
visualization ggplot2 plot
updated 2.2 years ago by ★ 27k • written 2.3 years ago by ★ 2.9k
3
votes
8
replies
1.6k
views
Forum: What are the pain points of using Genomics on the cloud today?
datasharing pipelines workspaces cloud genomics
updated 2.3 years ago by 22k • written 2.3 years ago by ▴ 520
0
votes
0
replies
558
views
Forum: UniProt survey about programmatic access
documentation api survey uniprot
updated 2.3 years ago by 161k • written 2.3 years ago by ★ 2.4k
4
votes
9
replies
3.0k
views
Forum: 100% variance explained on one PC in DESeq2 PCA?
RNA-Seq DESeq2
2.3 years ago by melatoninixo ▴ 10
17
votes
14
replies
3.3k
views
Forum: Asking for feedback on a Python library for computing alignments
alignment Python
updated 11 months ago by ▴ 220 • written 2.3 years ago by ▴ 60
0
votes
1
reply
646
views
Forum: Statistical methods Books Recommendation
Books Recommendation
updated 2.3 years ago by 82k • written 2.3 years ago by ▴ 110
0
votes
0
replies
473
views
Forum: Is there any limitation for number of samples in AUC analysis ?
curves ROC
2.3 years ago by sabaghianamir70 ▴ 70
6
votes
5
replies
4.0k
views
6 follow
Forum: How is the job outlook in 2020 ?
career outlook
updated 22 months ago by 43k • written 5.9 years ago by • 0
6
votes
5
replies
1.2k
views
6 follow
Forum: Usability of depiction of individual reads in genome browser visualization
visualization browser genome
updated 2.3 years ago by 100k • written 2.3 years ago by ▴ 600
4
votes
7
replies
1.8k
views
Forum: Data Base management system for data lake: Cassandra vs MongoDB vs Apache HBase
HBase Cassandra MongoDB Data-Lake
updated 2.3 years ago by ★ 3.2k • written 2.3 years ago by ▴ 120
9
votes
8
replies
5.2k
views
9 follow
Forum: insert figure and code in the post of Biostars?
meta biostars
updated 14 months ago by 43k • written 8.9 years ago by ★ 2.2k
7
votes
2
replies
1.6k
views
Forum: What are the most influential Bioinformatics/Computational Biology papers/methods/discoveries of 2021?
snp papers survey
updated 15 months ago by 43k • written 2.4 years ago by ★ 1.4k
0
votes
1
reply
775
views
Forum: What are the most important papers/methods in Genomics/Bioinformatics of 2021?
publications
updated 11 months ago by 43k • written 2.4 years ago by ★ 2.5k
24
votes
11
replies
4.2k
views
7 follow
Forum: In 2022 is Perl and Ruby programming languages still useful for bioinformatics?
ruby perl
updated 2.4 years ago by 8.6k • written 2.4 years ago by • 0
0
votes
4
replies
871
views
Forum: Terms (like atlas, map, and archive) on database description
database
2.4 years ago by bioinformaticsBoy ▴ 10
2
votes
2
replies
799
views
Forum: How much are companies willing to pay for microbiome data?
NGS metagenomics microbiome
2.4 years ago by maa4618 • 0
19
votes
1
reply
4.5k
views
Forum: Best programming language for bioinformatics - R Language
programming R
updated 14 months ago by 82k • written 3.2 years ago by ▴ 420
6
votes
7
replies
1.4k
views
Forum: How to change my email address
meta biostars
updated 2.4 years ago by • 0 • written 3.2 years ago by ▴ 50
9
votes
11
replies
3.4k
views
6 follow
Forum: 2021: state and usage of compressed file standards better than BAM and FASTQ
bam compression fastq
updated 22 months ago by ▴ 120 • written 3.0 years ago by ★ 5.3k
10
votes
3
replies
4.7k
views
Forum: Trimming tools - your experience please?
trimming
updated 2.5 years ago by 19k • written 2.5 years ago by ▴ 20
8
votes
9
replies
1.8k
views
Forum: Most useful public genomic/genetic databases/tools/applications
public-data genomics Genetics open-access
updated 15 months ago by 43k • written 2.5 years ago by ▴ 520
74
votes
14
replies
30k
views
12 follow
Forum: Bioinformatics Consulting Thoughts
consulting
updated 22 months ago by 43k • written 13.9 years ago by 4.5k
6
votes
3
replies
1.2k
views
Forum: Computational Biology Conference
biology computational science research conference
updated 2.5 years ago by 47k • written 2.5 years ago by ▴ 790
0
votes
1
reply
737
views
Forum: UK supercomputer Cambridge-1 vs SDSC vs TACC
SDSC TACC HPC Cambridge-1
updated 2.5 years ago by 142k • written 2.5 years ago by ★ 9.4k
0
votes
1
reply
724
views
Forum: Official/centralized/designated genetic/biological knowledge graph?
knowledge graph
updated 2.5 years ago by 8.7k • written 2.5 years ago by • 0
0
votes
0
replies
545
views
Forum: Targeted sequencing and phylogenetics
SC sequencing exome gene_panel
updated 15 months ago by 43k • written 2.5 years ago by • 0
2
votes
7
replies
3.1k
views
Forum: M1 Pro/Max and future
Max M1 M2 Pro Mac
updated 2.5 years ago by 142k • written 2.5 years ago by ▴ 20
21
votes
8
replies
7.5k
views
Forum: Is there ever a good reason to use a log transformation instead of Box-Cox?
data skew transformation power
updated 2.5 years ago by 100k • written 2.5 years ago by ★ 27k
6
votes
2
replies
793
views
Forum: Biology undergraduate looking for mentor
computational-biology Biology mentor Toronto
updated 2.5 years ago by 43k • written 2.5 years ago by • 0
1
vote
7
replies
1.4k
views
Forum: Does it matter where I get my PhD? I am currently a masters student.
advice PhD Masters
2.5 years ago by nickroseae ▴ 10
16
votes
7
replies
2.0k
views
Forum: Will a user #100000 get Tesla Model 3?
milestone
updated 2.6 years ago by 100k • written 2.6 years ago by ★ 27k
2
votes
8
replies
1.9k
views
Forum: Non biology & computer professional interested in bioinformatics
computer-science machine-learning
updated 15 months ago by 43k • written 2.6 years ago by • 0
0
votes
0
replies
646
views
Forum: PhD Bioinformatics Remote positions
PhD
updated 22 months ago by 43k • written 2.6 years ago by ▴ 30
1,000 results • Page 4 of 20
Recent Votes
Answer: Which trajectory method is better !?
Answer: InferCNV results interpretation
Comment: absolute path for symbolic links in Snakefile
Deeptools computematrix of scale region give different result from ref point TSS.
course on Landscape Genomics at the EPFL in Lausanne (June 17-21)
course on Landscape Genomics at the EPFL in Lausanne (June 17-21)
cellranger error message
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Recent Awards • All
Scholar to Jesse ▴ 770
Commentator to andres.firrincieli 3.6k
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Recent Replies
Comment: absolute path for symbolic links in Snakefile by Jesse ▴ 770
That's really handy, and much more of a general solution than stripping off the directory names! So yifangt86, if you're on Linux you can …
Comment: Truncated metadata file report from ENA Portal API by GenoMax 142k
Are you missing a `"` at the end of the URL. Doing wget -O test.out "https://www.ebi.ac.uk/ena/portal/api/filereport?accession=PRJNA43…
Comment: Different output for read length by marco.barr ▴ 100
very strange, I double checked the BAM file and it is the same one I used for your request. Are the commands I wrote above correct? How is …
Comment: Different output for read length by Pierre Lindenbaum 161k
the first read as a length of 1747, i wonder how you can just find '50' $ wget -qO - "https://gist.githubusercontent.com/Macdot3/4650…
Comment: Problem with Seurat package in PercentageFeatureSet function by bk11 ★ 2.4k
Yes, `CreateAssayObject` function is used for only expression matrix.
Comment: Different output for read length by marco.barr ▴ 100
Here is my result, I hope you can see it. [https://gist.github.com/Macdot3/4650243a10540d8c06f728ffc16a136c][1] [1]: https://gist.gith…
Comment: Different output for read length by marco.barr ▴ 100
I just published my link on paste, why can't I see my public paste on the site?
Comment: cellranger error message by Max • 0
I'm having a similar issue. The sample_id matches the filename prefix before _S1_L001, but I get the error: Log message: Requested sample(s…
Comment: Different output for read length by marco.barr ▴ 100
Thanks so much GenoMax, I'm sharing the link as you told me
Comment: Different output for read length by GenoMax 142k
Post the data at pastebin.com and add a link here or you could a GitHub gist. You were suspended by biostars SPAM bot since you pasted link…
Comment: Different output for read length by GenoMax 142k
Post the data at pastebin.com and add the link here. You were suspended by biostars SPAM bot since you pasted these links in quick successi…
Comment: RNA seq analysis by s.ghazala • 0
Could you clarify on what exactly you are referring to with "SRA data table". If you are retrieving fastq files (raw data), then you could …
Comment: Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA by sovrappensiero ▴ 100
Thanks, Chris. I really appreciate your help. This has clarified a lot for me!
Answer: Snakemake fails to find conda in PBS by tim.booth ▴ 60
Snakemake does not have support for micromamba. There is an open issue: https://github.com/snakemake/snakemake/issues/2322
Comment: absolute path for symbolic links in Snakefile by tim.booth ▴ 60
Further to this answer - if you are using GNU coreutils (ie. any modern Linux), there is a "-r" flag to fix this problem. I typically use "…
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