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32
votes
14
replies
6.8k
views
9 follow
Forum: Pat Schloss of Mothur uses this
uses-this
updated 13 months ago by 43k • written 9.5 years ago by 100k
6
votes
2
replies
6.8k
views
Forum: Looking For Articles That Used Multi-Omic Techniques For Personalized Or Familial Clinical Studies
proteomics genomics
updated 14 months ago by 43k • written 10.9 years ago by 18k
66
votes
21
replies
6.8k
views
18 follow
Forum: Is there anyone who was a pure biologist?
next-gen
updated 13 months ago by 43k • written 10.0 years ago by ▴ 100
20
votes
15
replies
6.8k
views
Forum: How To Analyze Your Own Exome
exome filtering analysis vcf variant
updated 3.1 years ago by 43k • written 10.6 years ago by ▴ 130
18
votes
4
replies
6.8k
views
Forum: Useful Resource To Self-Study Bioinformatics
resource
updated 14 months ago by 43k • written 11.5 years ago by ★ 1.5k
14
votes
11
replies
6.8k
views
7 follow
Forum: Do you need a deduplication tool for FASTQ data in fastp?
deduplication fastp
updated 11 months ago by 43k • written 4.9 years ago by ★ 2.5k
83
votes
30
replies
6.7k
views
18 follow
Forum: Optimal design for bioinformatics "lab" space?
design lab-space
updated 22 months ago by 43k • written 9.0 years ago by 18k
25
votes
9
replies
6.7k
views
Forum: Storage Solutions For Genomic Research Centers
data parallel genomics
updated 14 months ago by 43k • written 10.7 years ago by ▴ 140
9
votes
7
replies
6.7k
views
6 follow
Forum: When applying to a PhD program in Harvard or MIT, how many publications are recommended?
GradSchool Grad Harvard School Application
updated 2.7 years ago by 43k • written 2.9 years ago by • 0
7
votes
5
replies
6.7k
views
Forum: Masters in Bioinformatics for a pharmacy graduate
education masters
updated 13 months ago by 43k • written 9.4 years ago by ▴ 30
13
votes
11
replies
6.6k
views
10 follow
Forum: How Would You Use Open Source Tools For Laboratory Notebook System ?
chemoinformatics
updated 21 months ago by 43k • written 12.6 years ago by ▴ 40
57
votes
42
replies
6.6k
views
12 follow
Forum: Why is academic software hard to install?
software-installation
updated 2.3 years ago by 43k • written 9.5 years ago by 33k
12
votes
1
reply
6.6k
views
Forum: Robert Edgar of USearch and MUSCLE uses this
uses-this
updated 13 months ago by 43k • written 9.6 years ago by 100k
11
votes
7
replies
6.6k
views
Forum: Using Graphics Processing Units (GPUs) in bioinformatics
algorithm GPU
updated 11 months ago by 43k • written 4.7 years ago by ▴ 310
17
votes
10
replies
6.5k
views
10 follow
Forum: Linearize fasta files
fasta code-golf
updated 2.7 years ago by ▴ 80 • written 5.2 years ago by 16k
47
votes
24
replies
6.5k
views
15 follow
Forum: What's fascinating about Bioinformatics for potential students?
career msc
updated 16 months ago by 43k • written 6.5 years ago by 54k
29
votes
10
replies
6.5k
views
10 follow
Forum: Interesting/useful/beautiful bio sequence viz tools
viz python visualisation
updated 13 months ago by 43k • written 6.1 years ago by 21k
22
votes
2
replies
6.5k
views
Forum: Cole Trapnell of TopHat and CuffLinks uses this
uses-this
updated 13 months ago by 43k • written 9.5 years ago by 100k
13
votes
3
replies
6.4k
views
Forum: Can We Have A Collection Of Interesting Research Topics?
project phd
updated 14 months ago by 43k • written 11.9 years ago by 54k
11
votes
5
replies
6.4k
views
Forum: Slurm, Son of Grid Engine, Mesos, and Hadoop YARN vs HTCondor and Torque
PBS HPC SDSC Torque
updated 11 months ago by 43k • written 5.7 years ago by ★ 9.4k
8
votes
7
replies
6.4k
views
6 follow
Forum: Bioinformatic or bioinformatics?
spelling
updated 11 months ago by 43k • written 6.6 years ago by ▴ 310
16
votes
6
replies
6.4k
views
Forum: Bioinformatic jobs outside academia?
industry
updated 13 months ago by 43k • written 9.3 years ago by ▴ 530
15
votes
0
replies
6.4k
views
Forum: Erik Garrison of FreeBayes uses this
uses-this
updated 13 months ago by 43k • written 9.4 years ago by 100k
3
votes
7
replies
6.3k
views
Forum: Bioinformatics Career As A Work-At-Home Job
career
updated 14 months ago by 43k • written 11.8 years ago by ▴ 60
52
votes
18
replies
6.3k
views
14 follow
Forum: Do You Feel Good Or Bad About Putting Your Photo At Biostar?
meta biostars
updated 14 months ago by 43k • written 10.6 years ago by ★ 1.1k
45
votes
23
replies
6.3k
views
6 follow
Forum: biostar.slack.com: Chat for the biostars community -- [ feel free to join ]
chat slack
updated 14 months ago by 43k • written 6.1 years ago by 104k
16
votes
15
replies
6.3k
views
Forum: Would You Be Interested In Having A Usesthis Like Site For The Bioinformatics Community?
hardware software
updated 13 months ago by 43k • written 10.1 years ago by ▴ 920
72
votes
28
replies
6.3k
views
10 follow
Forum: Bioinformatics commercial services as a risk factor for scientific misconduct
commercial-services ethics misconduct
updated 22 months ago by 43k • written 9.3 years ago by ▴ 90
9
votes
0
replies
6.3k
views
Forum: Rafael Irizarry: Statistics For Genomics Youtube Channel
statistics bioconductor
updated 2.4 years ago by 43k • written 11.2 years ago by 100k
29
votes
21
replies
6.2k
views
Forum: PhD vs Field application scientist in industry
career
updated 12 months ago by 43k • written 7.7 years ago by ▴ 80
57
votes
15
replies
6.2k
views
9 follow
Forum: Good practices while dealing with very large datasets
Big-Data Programming
updated 11 months ago by 43k • written 7.0 years ago by ★ 1.2k
3
votes
2
replies
6.2k
views
Forum: Best book for learning Next-Generation Sequencing Data Analysis?
ngs
updated 11 months ago by 43k • written 6.2 years ago by ★ 1.2k
98
votes
41
replies
6.2k
views
17 follow
Forum: I am really pissed off by the bioinformatics software world. Do/can we have a better solution?
software-error next-gen-sequencing
updated 12 months ago by 43k • written 7.7 years ago by ▴ 510
34
votes
13
replies
6.1k
views
11 follow
Forum: Best Way To Learn Bioinformatics For System Level Programmers.
NGS HPC
updated 14 months ago by 43k • written 10.3 years ago by ▴ 90
36
votes
2
replies
6.1k
views
Forum: Brian Haas of the Trinity Assembler uses this
uses-this
updated 13 months ago by 43k • written 9.5 years ago by 100k
45
votes
35
replies
6.1k
views
12 follow
Forum: looking for a bioinformatics project to do during military rotation
military
updated 22 months ago by 43k • written 6.7 years ago by ▴ 60
134
votes
65
replies
6.1k
views
11 follow
Forum: Bioinformatics vs. the Climate Crisis
RNA-Seq Climate
updated 10 months ago by 43k • written 4.4 years ago by ▴ 880
67
votes
21
replies
6.1k
views
8 follow
Forum: Meta: Markdown in Biostars (now enabled)
meta
13 months ago by Ram 43k
16
votes
9
replies
6.1k
views
Forum: Reviewing a MOOC: HarvardX - PH525x Data Analysis for Genomics
education mooc
updated 13 months ago by 43k • written 9.9 years ago by 100k
31
votes
7
replies
6.0k
views
9 follow
Forum: Beginner in Bioinformatics / computational biology field
Bioinformatics Computational-biology
updated 12 months ago by 43k • written 7.9 years ago by ▴ 70
50
votes
20
replies
6.0k
views
18 follow
Forum: Explain bioinformatics to a 10 year old
bioinformatics
updated 13 months ago by 43k • written 8.1 years ago by ★ 1.1k
4
votes
11
replies
6.0k
views
Forum: Any Opinions On Q&A System At Researchgate?
researchgate
updated 14 months ago by 43k • written 11.0 years ago by 3.2k
9
votes
5
replies
6.0k
views
Forum: Can I switch back to wet lab in phd after doing a master in bioinformatics?
biology wet-lab phd
updated 13 months ago by 43k • written 9.0 years ago by ▴ 10
41
votes
27
replies
6.0k
views
8 follow
Forum: Why bioinformaticians need to know programming languages?
Python R Programming
updated 11 months ago by 43k • written 6.9 years ago by ▴ 90
55
votes
16
replies
6.0k
views
8 follow
Forum: Mission Impossible: you have 1 minute to analyze the Ebola Genome
ebola mission-impossible
updated 19 months ago by 43k • written 9.5 years ago by 100k
8
votes
0
replies
6.0k
views
Forum: Jonathan Pevsner author of Bioinformatics and Functional Genomics uses this
uses-this
updated 13 months ago by 43k • written 9.6 years ago by 100k
17
votes
12
replies
6.0k
views
Forum: Bioinformatics Tools And Resources Obituary Section
resources
updated 14 months ago by 43k • written 12.0 years ago by 11k
23
votes
6
replies
5.9k
views
Forum: Bioinformatics online course
course teaching
updated 18 months ago by 43k • written 9.0 years ago by ▴ 150
51
votes
16
replies
5.9k
views
11 follow
Forum: What Are The Most Influential Bioinformatics/Computational Biology Papers Of 2011?
papers
updated 14 months ago by 43k • written 12.4 years ago by ★ 2.9k
22
votes
8
replies
5.9k
views
Forum: Sequenceserver: Easily Deploy A Custom, User-Friendly Blast Webserver
web-server blast-database
updated 14 months ago by 43k • written 10.5 years ago by ★ 2.5k
1,000 results • Page 4 of 20
Recent Votes
Comment: How to assign cell types after integration in scRNA
NGS forensics: how to know if data is fabricated
Answer: ChIP-seq datasets: input samples omitted?
Comment: Help understanding how KEGG Ortholog `K00004 ` has 3 ECs associated with it (EC:
A: Deeptools plotHeatmap - Maintain Order of Input BED file
Comment: NGS forensics: how to know if data is fabricated
Comment: calculate nucleotide diversity from whole-genome-sequence data for individual ge
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Recent Replies
Comment: How many reads for WGS Sequencing? by Ruqaiya • 0
Also, there is no mention of adapter sequence so which adapter sequence should i use to remove it from some other reads?
Comment: How many reads for WGS Sequencing? by Ruqaiya • 0
Also, Do you think i can reproduce at least most part of the data from the paper just on my laptop? It has 4 logical processors (Intel(R) C…
Comment: NGS forensics: how to know if data is fabricated by Philipp Bayer 8.3k
While I think this is an interesting case, I've before found cleaned 'raw' data on SRA. It happens: bioinformaticians receive the raw data,…
Comment: How many reads for WGS Sequencing? by Ruqaiya • 0
1. What does clipped Fastq mean? both forward and reverse reads in the same file? 2. Why would you remove 2000bp contigs? I feel it will gi…
Comment: How many reads for WGS Sequencing? by Ruqaiya • 0
Well, I downloaded both the reads from-[LINK][1]. Thats all i did. Thats the only thing i need to do, right? I'l try spades. [1]: http…
Comment: How to assign cell types after integration in scRNA by Francesco ▴ 10
Thanks for the fast reply.. however i had only partially understood the answer. Is correct saying that low-representation integration and b…
Answer: Can I run cellassign on samples independently if there is batch effect present? by Francesco ▴ 10
Hi! Whenever you do make independent analysis or aggregate data and analyze them, most cell type assignment tools start from raw counts to …
Comment: gvcf joint calling by zihanss • 0
Thanks for your comment, I get it now.
Answer: ChIP-seq datasets: input samples omitted? by ATpoint 82k
In my hands (and from what I know based on many years here) inputs are almost exclusively used during peak calling to correct for loci-spec…
Comment: How to assign cell types after integration in scRNA by ATpoint 82k
No difference here. After all you typically want a label per cluster/group, so either subset to the control condition to do the assignment,…
Comment: Differential Expression using Isoseq-supplemented reference transcriptome by gaoanwei • 0
I found the question and ASK the GPT4 turbo
Answer: Differential Expression using Isoseq-supplemented reference transcriptome by gaoanwei • 0
Your approach seems reasonable and well-informed, though it's perhaps less customary in the field, which could be why you haven't found pap…
Answer: How many reads for WGS Sequencing? by Mensur Dlakic ★ 27k
It takes 29 seconds to assemble this genome (20 CPUs) with the following statistics: 135 contigs, total 2821177 bp, min 200 bp, max …
Comment: NGS forensics: how to know if data is fabricated by noodle ▴ 530
IMO (and unfortunately) there needs to be an effort to develop these algorithms.
Comment: gvcf joint calling by Jeremy Leipzig 22k
the samples that are `./.` have no coverage (or not enough to call a genotype) and the `0/0` are homozygous reference
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