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ok, then you should add the donor information to the PCA analysis. First create a separate dataframe for the donors, then add with `factor`…
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If you are willing to do some coding I think <https://github.com/smarco/WFA2-lib> is among the fastest global aligners, the repo has C++ ex…
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There is an API that you could try: https://www.ebi.ac.uk/pride/markdownpage/prideutilities
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thanks.
looks interesting but it's broken. the Firefox console shows a 404 for https://www.ebi.ac.uk/pride/ws/archive/v2/peptidesummary?ke…
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Perhaps: https://www.ebi.ac.uk/pride/peptidome/
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Ah, I see. So seen that what I want is the per-gene correlation, the minimum of 20/25 for the pearson correlation still applies.
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I think you're misunderstanding some concepts here.
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> most up-to-date build
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Can you confirm that this answer is specific for `singleron` technology and associated bioinformatics software.
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> However, even though 3 biological replicates per condition seems to be the norm in these experiments, many papers discuss that we need at…
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If you have a one-click workflow ready and the necessary computation power to casually run it, then go for it. If it is any greater effort …
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