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Tool:
Lossless ALAPY Fastq Compressor (now for MacOS X with 10-20% improved speed and compression ratio)
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Ram
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written 7.1 years ago by
Petr Ponomarenko
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updated 10 months ago by
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written 11.8 years ago by
Istvan Albert
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updated 6 months ago by
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written 14.2 years ago by
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updated 19 days ago by
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written 2.9 years ago by
Pratik
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updated 8 weeks ago by
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written 4.0 years ago by
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updated 9 months ago by
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written 11.5 years ago by
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updated 11 days ago by
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written 7.4 years ago by
Tenghui Chen
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written 14.0 years ago by
Istvan Albert
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written 11.2 years ago by
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updated 8 months ago by
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updated 9 months ago by
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The reason for your problem was most likely due to you relative complex data and too little system memory. For 20000-30000 transcriptome se…
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Your table should look like this (GO terms):
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I understand, here is an example with topGO where you need a differential expression table (DESeq2 for example) and a table of GO terms:
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Thank u for your reply. The problem is that I used the genome and gene annotation from that webpage, not ensemble or ncbi, so I have to use…
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The anti-diagonal band does suggest some fraction of genotypes are strand-flipped - probably G/C or A/T variants.
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Please do not paste screenshots of plain text content, it is counterproductive. You can copy paste the content directly here (using the cod…
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Thank you! I need this for eukaryotic organism and known protein sequences, but I guess seqkit would work well!
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Paper referred to in question: https://pubmed.ncbi.nlm.nih.gov/29195078/
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> Can you clarify what you mean by "100% of reads pass cutadapt, even
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You didn't mention what kind of organism you are working with and what kind of protein you are looking for?
If it happens to be a microbia…
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