Limit : all time
all time today this week this month this year
1,000 results • Page 5 of 20
Sort: Votes
Rank Views Votes Replies
8
votes
4
replies
15k
views
Use of if-else statement in snakemake rule
snakemake if-else python
updated 4.5 years ago by • 0 • written 6.8 years ago by ▴ 140
8
votes
5
replies
3.2k
views
7 follow
What is the best way to merge multiple fasta files containing contigs?
Assembly Anvi’o fasta
updated 5.3 years ago by 11k • written 5.3 years ago by • 0
8
votes
7
replies
6.9k
views
I got low overall alignment rate running HiSAT2
RNA-Seq hisat hisat2 alignment
7.7 years ago by sslee1015 • 0
8
votes
11
replies
4.1k
views
STAR can not detect this chimeric read
RNA-Seq fusion STAR
updated 7.5 years ago by 20 • written 7.7 years ago by 11k
8
votes
5
replies
1.7k
views
differential expression analysis with DESeq2 & edgeR
RNA-Seq
3.5 years ago by Rob ▴ 170
8
votes
6
replies
5.7k
views
miRanda output meaning?
rna-seq
updated 7.0 years ago by 47k • written 7.0 years ago by ▴ 40
8
votes
7
replies
4.1k
views
Error with Bowtie 2
bowtie2 alignment
6.9 years ago by valerie ▴ 100
8
votes
5
replies
913
views
Why some genome assemblies don't have annotation?
genome assembly
5.1 years ago by 860101959 ▴ 10
8
votes
30
replies
5.3k
views
Per Base Sequence Content
sequencing fastqc genome sequence
updated 4.2 years ago by ▴ 560 • written 4.2 years ago by ▴ 20
8
votes
4
replies
2.0k
views
using different tools to identify differential exprssed genes
rna-seq RNA-Seq R
updated 19 months ago by 43k • written 8.7 years ago by ▴ 20
8
votes
11
replies
2.7k
views
directionality of RRBS
directional non-directional RRBS
updated 2.8 years ago by ★ 2.9k • written 2.9 years ago by ▴ 140
8
votes
6
replies
4.4k
views
Bwa Aln -Q 15 When To Use It? What Does It Do?
bwa trimming
updated 11.8 years ago by 100k • written 11.8 years ago by ▴ 640
8
votes
16
replies
1.4k
views
what is the ideal normalistation methods for TCGA gene expression or DNA methylation dtasets?
gene next-gen
4.4 years ago by Chaimaa ▴ 260
8
votes
9
replies
1.5k
views
superimpose
discovery ds visualizer
2.9 years ago by Alex ▴ 20
8
votes
3
replies
3.4k
views
which tool is used for separating forward and reverse from paired end fastq
Assembly
6.8 years ago by ranjini.shakthi • 0
8
votes
5
replies
14k
views
The comparison between HISAT2 and Tophat2
RNA-Seq Tophat2 HISAT2
updated 5.7 years ago by 43k • written 8.2 years ago by ▴ 50
8
votes
6
replies
955
views
How to create a Venn Diagram for overlapping SVs from a merged VCF
truvari structural-variants r vcf venn-diagram
6 months ago by Matteo Ungaro ▴ 100
8
votes
9
replies
3.1k
views
error in rstudio
csv matrix rstudio
updated 19 months ago by 43k • written 8.7 years ago by ★ 4.3k
8
votes
4
replies
3.2k
views
How to use machine learning in Fastq/Fasta data?
machine learning fasta fastq sequencing
7.0 years ago by inkprs ▴ 70
8
votes
14
replies
2.6k
views
RNA-Seq analysis with standard p-value
RNA-Seq
7.3 years ago by #### ▴ 220
8
votes
17
replies
4.0k
views
Getting nan value in vcftool relatedness command?
vcftools relatedness
6.3 years ago by Sharon ▴ 610
8
votes
4
replies
2.2k
views
Use Of Terms In Genome-Wide Analysis: Phenotype / Functionality / Fitness
12.8 years ago by 2184687-1231-83- ★ 5.1k
8
votes
11
replies
2.0k
views
using STAR instead of HISAT2
STAR
updated 21 months ago by 43k • written 22 months ago by ▴ 280
8
votes
9
replies
3.0k
views
6 follow
Big difference in estimated duplicate reads between forward and reverse of paired-end RNA-seq
RNA-Seq duplication fastqc
updated 23 months ago by ▴ 860 • written 4.5 years ago by ★ 2.1k
8
votes
15
replies
2.0k
views
RNAseq differential expression analysis : no significative FDR but significative GO enrichment
RNA-Seq differential expression
4.6 years ago by guillaume.rbt ★ 1.0k
8
votes
8
replies
1.6k
views
Clustering DNA sequences (from human genome)
sequencing genome
4.7 years ago by abdul.karim • 0
8
votes
14
replies
2.5k
views
6 follow
kallisto pseudoalignment rate is lower than literature
pseudoalignment kallisto RNA-seq
2.8 years ago by johnsonqinz • 0
8
votes
7
replies
1.3k
views
grep with -f switch is not working
grep
updated 4.5 years ago by 11k • written 4.5 years ago by ▴ 30
8
votes
7
replies
6.0k
views
Download human 3 UTR FASTA file
genome
8.2 years ago by bharata1803 ▴ 560
8
votes
8
replies
2.8k
views
Making chain files
Assembly genome alignment sequence
updated 4.8 years ago by 20 • written 4.8 years ago by ▴ 50
8
votes
5
replies
2.0k
views
BLASTp command line : filtering results by a minimum % of identity and % coverage
BLASTp
updated 7 months ago by 43k • written 2.6 years ago by ▴ 160
8
votes
11
replies
5.0k
views
Increasing kmer limit in SPAdes
Assembly Bacterial Spades Velvet
7.8 years ago by rrcutler ▴ 120
8
votes
1
reply
1.2k
views
CalculateGenotypePosteriors: A USER ERROR has occurred: Invalid argument ' '.
CalculateGenotypePosteriors gatk trio ped
3.3 years ago by DareDevil ★ 4.3k
8
votes
4
replies
873
views
Correlation network analysis
rna-seq
3.4 years ago by Lepomis_8 ▴ 30
8
votes
3
replies
5.3k
views
Bioinformatics project for a beginner
projects
updated 22 months ago by 43k • written 8.4 years ago by ▴ 30
8
votes
13
replies
1.7k
views
Mapped reads not mapping to a real sequence?
bam sam samtools kallisto
15 months ago by txema.heredia ▴ 130
8
votes
5
replies
1.1k
views
Bioinformatics Definitions
genome
updated 2.9 years ago by ★ 2.5k • written 2.9 years ago by ▴ 40
8
votes
14
replies
2.4k
views
6 follow
Definition of "=" in comparing two genes
sequencing gene
updated 2.5 years ago by 43k • written 9.9 years ago by • 0
8
votes
7
replies
3.9k
views
6 follow
Compatibility between my reference genome and GTF file
rna-seq hisat2 alignment reference genome
5.6 years ago by Batu ▴ 250
8
votes
1
reply
8.6k
views
Correlation heatmaps: use correlation as clustering distance or not?
heatmap RNA-Seq clustering
5.1 years ago by CuriousGuy ▴ 90
8
votes
3
replies
856
views
How safe the UCSC is for patients data
RNA-Seq
updated 4.7 years ago by 82k • written 4.7 years ago by ▴ 250
8
votes
1
reply
1.6k
views
Genome Sequencing And Evolutionary History
evolution
updated 10.3 years ago by 49k • written 10.3 years ago by ▴ 110
8
votes
14
replies
6.0k
views
Error in BWA-MEM running in linux
RNA-Seq BWA-MEM alignment
updated 6.0 years ago by 142k • written 6.0 years ago by ▴ 170
8
votes
12
replies
3.5k
views
fastq file format error
fastq illumina
updated 5.0 years ago by 161k • written 5.0 years ago by ▴ 350
8
votes
8
replies
2.5k
views
6 follow
Blast Is Giving Me A Result Totally Unrelated To The Gene I Expect
blast primer
updated 10.9 years ago by 20 • written 11.1 years ago by • 0
8
votes
5
replies
857
views
Frustrated with DEA results
microarray differential-expression
updated 7 months ago by ★ 6.0k • written 7 months ago by • 0
8
votes
20
replies
2.5k
views
Converting runpsipred Script to Work on Windows OS
psipred windows
updated 24 months ago by 43k • written 5.8 years ago by ▴ 270
8
votes
6
replies
2.6k
views
for low coverage RNAseq how many reads assigned is the bare minimum for differential gene expression analysis
RNA-Seq
5.3 years ago by senowinski ▴ 30
8
votes
8
replies
1.8k
views
6 follow
DESeq2 adjusted p-values of 0 when p-value > 0.05
RNA-seq DEseq2
updated 3.0 years ago by ▴ 390 • written 3.0 years ago by • 0
8
votes
10
replies
822
views
bash script
whole-genome-sequencing
updated 4 weeks ago by 43k • written 5 weeks ago by ▴ 30
1,000 results • Page 5 of 20
Recent Votes
Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i
lncRNA and ncPEPs identification
Answer: Identifying common DEGs among multiple datasets
Answer: ggrepel function: geom_text_repel()
Comment: switch off warning in blast command line
Forward And Reverse Strand Conventions
Answer: Would you bother re-mapping RNA-seq data from an old GRCh38 build to a newer ver
Recent Locations • All
China, 3 minutes ago
Netherlands, 4 minutes ago
Mexico, 7 minutes ago
Spain, 7 minutes ago
United Kingdom, 11 minutes ago
Macao, 14 minutes ago
India, 14 minutes ago
Recent Awards • All
Scholar to zx8754 11k
Teacher to Rob 6.6k
Popular Question to Nyksubuz ▴ 10
Popular Question to Govardhan Anande ▴ 150
Popular Question to Lhl ▴ 760
Popular Question to Takuma ▴ 20
Popular Question to BATMAN • 0
Recent Replies
Comment: How to generate table_annovar from VCF input? by Pierre Lindenbaum 161k
there is no `--allsample` option in the "usage" screen you're showing. I suspect you're using an old version ?
Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i by egascon • 0
Thank you very much again. I have learned a lot of things.
Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i by egascon • 0
It's a microarryay experiment, not RNASeq
Comment: Sam file Header problem by Pierre Lindenbaum 161k
https://gatk.broadinstitute.org/hc/en-us/articles/360035890671-Read-groups
Answer: Faster Needleman-Wunsch rapid global alignment of two sequences? by DGTool ▴ 20
I have also recently come across another global alignment algorithm that was recently released which could seem pretty interesting to test …
Comment: Faster Needleman-Wunsch rapid global alignment of two sequences? by b.contreras.moreira ▴ 190
Not sure, you might ask in the repo, please share here the response if you find it
Comment: How to generate table_annovar from VCF input? by LucisTheFather • 0
Would you be more specific to your question? Do you mean how to debug this syntax error?
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU by hophuquy0944 • 0
thank you
Comment: How to extract cells of different species after mapping with combined genome? by Tony • 0
I think this method should be applicable to all high-throughput single-cell RNA-seq platforms. Although the method of determining cell spec…
Comment: BiomartException: Query ERROR for existing dataset in BioMart by Nyksubuz ▴ 10
The dataset you want (taestivum_eg_gene) exists within the "plants_mart" schema, not the default schema. Your current code assumes the defa…
Comment: Add line under stat test by Nyksubuz ▴ 10
You could use [this][1] [1]: https://ggplot2.tidyverse.org/reference/geom_segment.html
Comment: API kegg - IndexError: list index out of range by Nyksubuz ▴ 10
It might be because the gene symbol is not found in the KEGG database. Add some extra error handling before parsing the results or do a man…
Comment: Sam file Header problem by saifulislam99121 • 0
Thank you for your reply. I am not very much sure about this RG. Can you explain me a bit?
Comment: GRIDSS: the Genomic Rearrangement IDentification Software Suite by dario.garvan ▴ 520
It seems that Alexandrov's [structural variant and copy number signatures][1] estimated by the [SigProfiler software ecosystem][2] aren't c…
Comment: Faster Needleman-Wunsch rapid global alignment of two sequences? by GenoMax 142k
Then you may want to see if a program like `lastz` ([**LINK**][1]) may be useful. [1]: https://github.com/lastz/lastz
Traffic: 2017 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6