2
votes
9
replies
823
views
4
votes
9
replies
1.2k
views
5 months ago by
Begonia_pavonina
▴
150
0
votes
9
replies
1.7k
views
updated 11 weeks ago by
Ram
43k
•
written 3.7 years ago by
ovariohisterectomia
▴
40
1
vote
9
replies
877
views
5 months ago by
i.sudbery
19k
0
votes
9
replies
979
views
3
votes
9
replies
787
views
updated 10 months ago by
Ram
43k
•
written 10 months ago by
artemchuki
•
0
0
votes
9
replies
1.2k
views
1
vote
9
replies
615
views
updated 3 months ago by
dthorbur
★
1.9k
•
written 3 months ago by
fish_enthusiast
•
0
6
votes
9
replies
2.0k
views
updated 11 months ago by
Ram
43k
•
written 15 months ago by
luzglongoria
▴
50
1
vote
9
replies
520
views
1
vote
9
replies
4.4k
views
updated 4 months ago by
rpolicastro
13k
•
written 19 months ago by
n.anuragsharma
▴
30
3
votes
9
replies
672
views
1
vote
9
replies
1.0k
views
1
vote
9
replies
658
views
5 months ago by
Bjorn
•
0
1
vote
9
replies
855
views
updated 6 weeks ago by
Dave Carlson
★
1.7k
•
written 6 weeks ago by
Matthew
•
0
4
votes
9
replies
1.0k
views
0
votes
9
replies
581
views
1
vote
9
replies
1.5k
views
updated 6 weeks ago by
flavianegrete
•
0
•
written 3.4 years ago by
langziv
▴
50
0
votes
9
replies
480
views
28 days ago by
Jay
•
0
0
votes
9
replies
902
views
0
votes
9
replies
1.1k
views
1
vote
9
replies
620
views
0
votes
9
replies
1.4k
views
0
votes
9
replies
1.5k
views
4
votes
9
replies
2.6k
views
3
votes
9
replies
1.7k
views
6
votes
9
replies
2.9k
views
updated 10 months ago by
Ram
43k
•
written 2.3 years ago by
aimanbarki
▴
20
1
vote
9
replies
3.3k
views
updated 8 months ago by
nehakhilwani18
•
0
•
written 5.7 years ago by
StudentBio
•
0
3
votes
8
replies
981
views
1
vote
8
replies
1.2k
views
4
votes
8
replies
1.8k
views
11 months ago by
eesha28112001
•
0
0
votes
8
replies
4.4k
views
1
vote
8
replies
1.5k
views
updated 4 months ago by
ATpoint
82k
•
written 9 months ago by
Assa Yeroslaviz
★
1.8k
1
vote
8
replies
821
views
5
votes
8
replies
1.9k
views
1
vote
8
replies
970
views
4
votes
8
replies
2.0k
views
0
votes
8
replies
9.9k
views
updated 10 months ago by
Ram
43k
•
written 6.8 years ago by
himanimalhotra89
•
0
1
vote
8
replies
1.1k
views
0
votes
8
replies
527
views
3
votes
8
replies
905
views
0
votes
8
replies
643
views
updated 8 weeks ago by
ido.idobar
▴
10
•
written 3 months ago by
Elizabeth
▴
30
5
votes
8
replies
599
views
updated 3 months ago by
colindaven
6.4k
•
written 3 months ago by
oghzzang
▴
50
3
votes
8
replies
608
views
8 weeks ago by
julien.wollbrett
•
0
0
votes
8
replies
1.5k
views
0
votes
8
replies
312
views
1
vote
8
replies
3.4k
views
3
votes
8
replies
2.0k
views
updated 11 months ago by
Ram
43k
•
written 5.5 years ago by
nagendranp1991
•
0
2
votes
8
replies
1.0k
views
1
vote
8
replies
3.9k
views
updated 4 months ago by
jv
★
1.8k
•
written 2.3 years ago by
yang.zhizhang
•
0
Recent Votes
Recent Locations •
All
India, just now
USA, just now
United States, just now
Galway, Ireland, just now
United States, 2 minutes ago
Australia, 3 minutes ago
Germany, 4 minutes ago
Recent Awards •
All
Popular Question to
chaco001
▴
40
Commentator to
GenoMax
141k
Popular Question to
rheab1230
▴
140
Popular Question to
BioinfGuru
★
1.7k
Popular Question to
vinayjrao
▴
250
Supporter to
Jalil Sharif
▴
80
Recent Replies
Answer: Create a new bed file with all pairwise combinations between two other bed files
by
Alex Reynolds
35k
I think Pierre's answer might be correct for your test input, but it doesn't account for the start position of the reference element and so…
Comment: Highest variable features in single cell data
by
bk11
★
2.4k
You need to be clear about how `Seurat` defines highly variable genes here. Highly variable genes are the genes that have very high express…
Comment: Heatmap and rna-seq
by
GenoMax
141k
Please include a link when you are recommending a tool. There can be programs with similar names.
Comment: how to combine multiple RNAseq count files into a single dataframe in R and unix
by
Ram
43k
Simple:
```r
data <- lapply(files, read_tsv)
data <- Reduce(merge, data) # or Reduce(full_join, data)
```
<a href="" title="Text added bec…
Answer: Source other conda environments in a nextflow pipeline when nextflow itself is i
by
ATpoint
82k
You can make each process use a dedicated environment, see https://www.nextflow.io/docs/latest/conda.html#use-existing-conda-environments
…
Comment: how to combine multiple RNAseq count files into a single dataframe in R and unix
by
BioinfGuru
★
1.7k
Hi,
Just thought I'd share this code snippet here for when each file contains multiple samples. I tried using lapply (as suggested by Ram)…
Comment: Low mapping rate with Salmon
by
i.sudbery
19k
Take your STAR alignment and sum all the counts for each gene. You can either do this by providing an annotation to STAR, or by running fea…
Comment: How to convert plink files to Hapmap Format
by
bk11
★
2.4k
If you run your data with plink 2.0, you will have ERRCODE column in your result file showing the reason behind "NA" p-value.
https://www.b…
Comment: genome assembly records not present in assembly_summary.txt
by
sapuizait
▴
10
jesus its in the Genbank file and I was looking at the refseq! I m such a moron - thanks for pointing it out -sorry about that :(
Comment: ScRNA data question
by
bk11
★
2.4k
I wonder how the `Vlnplots` will look if you normalize the data using `NormalizeData()` function in `Seurat`. The flat line in your plot ar…
Comment: Low mapping rate with Salmon
by
GenoMax
141k
> Does that mean that the reads that are not mapped to my trascriptome are not exons/coding genes?
Reads are likely aligning in regions wh…
Comment: How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
by
cmdcolin
★
3.8k
the gencode link is broken now but here is a back up of that blogpost on archive https://web.archive.org/web/20130618221342/http://gencodeg…
Comment: Low mapping rate with Salmon
by
Patadu94
•
0
I'll try to make the decoy file again but I remember you also told me that it is only recommended and not mandatory for running `salmon`. I…
Comment: Low mapping rate with Salmon
by
Patadu94
•
0
For doing this, should I just look at the log.out.file?
Traffic: 2580 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6