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6
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2
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2.6k
views
News: RNA-Seq Data Analysis Workshop in Berlin, Germany (full)
NGS RNA-Seq workshop
updated 12 months ago by 43k • written 7.4 years ago by 11k
4
votes
2
replies
3.0k
views
News: New ebook: From cell line to Command line to learn computational biology
unix snakemake computational-biology RNA-seq
5 months ago by Ming Tommy Tang ★ 3.9k
12
votes
2
replies
476
views
News: 8th Berlin Summer School in NGS Data Analysis (June 10-14, 2024) - already half booked
Workshop RNA-Seq DNA-Seq Illumina
24 days ago by David Langenberger 11k
1
vote
2
replies
1.0k
views
News: Sage Bionetworks is seeking researchers and data scientists to participate in software user research!
research software
updated 11 months ago by 43k • written 5.2 years ago by ▴ 30
2
votes
2
replies
1.4k
views
News: GeNets: a unified web platform for network-based genomic analyses
networks pathways RNA-Seq visualization
updated 11 months ago by 43k • written 5.9 years ago by ★ 5.2k
1
vote
2
replies
1.7k
views
News: Workshop: Data analysis in high throughput biology. deadline today (2 places left)
next-gen R RNA-Seq
updated 11 months ago by 43k • written 7.1 years ago by ★ 2.5k
2
votes
2
replies
1.9k
views
News: Introducing a new Instructor of Physalia-Courses: Dr. January Weiner
next-gen SNP sequence
updated 12 months ago by 43k • written 7.4 years ago by ★ 2.5k
0
votes
2
replies
1.7k
views
News: 2 Days Hands on Workshop on Transcriptome-Seq Data Analysis
RNA-Seq sequencing SNP Assembly
updated 11 months ago by 43k • written 6.9 years ago by • 0
0
votes
2
replies
1.9k
views
News: Webinar: Multi-omics: Challenges, opportunities and application to biomarker discovery
biomarker next-gen-sequencing multiomics cancer
updated 11 months ago by 43k • written 6.9 years ago by ▴ 750
2
votes
2
replies
1.4k
views
News: Course: Applied Statistics and Bioinformatics with R and Bioconductor. (Berlin, 22-26 January 2018)
R next-gen-sequencing
updated 11 months ago by 43k • written 6.5 years ago by ★ 2.5k
1
vote
2
replies
764
views
News: Ensembl reduced functionality, early March
ensembl
updated 11 months ago by 43k • written 4.3 years ago by 23k
1
vote
2
replies
1.4k
views
News: Webinar on Diagnosis of Rare Diseases using NGS Based Multi-gene Testing- Case studies by Dr.Aparna Ganapathy on 18 Apr 2018
variant-calling rare-disease dna-seq strand-ngs
updated 11 months ago by 43k • written 6.1 years ago by ▴ 70
0
votes
2
replies
1.1k
views
News: Training - Introduction to Deep Learning
Deep-Learning Machine-Learning Python-Programming
updated 10 months ago by 43k • written 3.8 years ago by ★ 2.5k
3
votes
2
replies
1.3k
views
News: Genome Informatics meeting software list
meetings genomics informatics software
updated 11 months ago by 43k • written 6.5 years ago by 26k
6
votes
2
replies
2.1k
views
News: RNA-Seq Data Analysis Workshop in Leipzig, Germany (09 - 12 October 2017)
NGS RNA-Seq workshop
updated 11 months ago by 43k • written 6.8 years ago by 11k
2
votes
2
replies
743
views
News: ISO usability testers for NCBI comparative genome viewer
comparative eukaryotic alignment pangenome
2.3 years ago by SanjidaR_NCBI ▴ 60
2
votes
2
replies
2.7k
views
News: ENCODE 2015: Research Applications and Users Meeting
workshop mouse-encode encode
updated 13 months ago by 43k • written 8.9 years ago by 35k
6
votes
2
replies
1.1k
views
News: Temporarily reduced functionality of Ensembl and Ensembl Genomes
Ensembl
updated 11 months ago by 43k • written 5.2 years ago by ★ 2.4k
8
votes
2
replies
811
views
News: FINAL CALL - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (May 6-8, 2024 in Berlin)
single-cell sequencing
29 days ago by David Langenberger 11k
3
votes
2
replies
1.0k
views
News: BETA Testing Opportunity for new RNA-seq data analysis tool
beta-testing RNA-seq multi-omics ngs
updated 11 months ago by 43k • written 5.3 years ago by • 0
5
votes
2
replies
1.5k
views
News: Google Dataset Search
google
updated 11 months ago by 43k • written 5.7 years ago by 161k
2
votes
2
replies
949
views
News: Interested in Machine Learning?
deep-learning machine-learning
updated 11 months ago by 43k • written 5.0 years ago by ★ 2.5k
7
votes
2
replies
2.3k
views
News: Annotation of Zebrafish pri-miRNAs promoters and CAGE-seq detected active Drosha processing events.
Drosha-processing moRNAs pri-miRNAs zebrafish
updated 21 months ago by 43k • written 8.4 years ago by ★ 2.4k
0
votes
2
replies
1.1k
views
News: Online Course - A Practical Introduction to NGS Data Analysis (February 01-03, 2023)
NGS DNAseq variant-calling RNAseq
15 months ago by David Langenberger 11k
3
votes
2
replies
2.6k
views
News: Samtools/htslib v1.2 released
htslib samtools bcftools
updated 13 months ago by 43k • written 9.3 years ago by 104k
0
votes
2
replies
2.1k
views
News: Seqnews.Net: Discover And Share News On Next-Generation Sequencing
next-gen-sequencing
updated 14 months ago by 43k • written 11.4 years ago by 11k
11
votes
2
replies
2.4k
views
News: Ensembl 76 is out
Genome-browser Ensembl
updated 2.4 years ago by 43k • written 9.7 years ago by 23k
5
votes
2
replies
4.7k
views
News: GeneSCF (Gene Enrichment Tool): Advice to users
kegg GeneSCF GO annotation
updated 14 months ago by 43k • written 7.3 years ago by 7.5k
0
votes
2
replies
213
views
News: NGS & Microarray Custom Data Analysis Training Program
snp RNA-Seq next-gen-sequencing ChIP-Seq
updated 11 months ago by 43k • written 4.8 years ago by • 0
3
votes
2
replies
752
views
News: NCBI BLAST+ 2.14.1 Now Available
NCBI BLAST
8 months ago by PeterC_NCBI ▴ 410
5
votes
2
replies
3.7k
views
News: Tuesday 10/29 Live Tour Of New Features In Integrated Genome Browser 8
genome-browser RNA-seq ChIP-seq
updated 14 months ago by 43k • written 10.5 years ago by ★ 2.4k
9
votes
2
replies
14k
views
News: Bio-Linux 8 is now available
genome rna-seq alignment Assembly next-gen
updated 2.4 years ago by 43k • written 9.8 years ago by ★ 2.2k
2
votes
2
replies
1.9k
views
News: BioC 2015, Bioconductor Annual Conference, July 20-22, Seattle, WA
Bioconductor Conference
updated 22 months ago by 43k • written 9.0 years ago by ★ 1.6k
2
votes
2
replies
1.2k
views
News: Bioinformatics Solutions on AWS
Cloud AWS
updated 2.9 years ago by 43k • written 3.0 years ago by ▴ 20
6
votes
2
replies
2.3k
views
News: Galaxy-specific Biostar Instance
galaxy biostars
updated 14 months ago by 43k • written 10.0 years ago by ▴ 380
7
votes
2
replies
1.2k
views
News: NGS Data Analysis Workshops 2024
scRNA-seq dna-seq rna-seq nextflow
3 months ago by David Langenberger 11k
0
votes
2
replies
2.1k
views
News: NVIDIA GPU Conference sponsorship for Biostars + updated advertising terms
biostars meta
updated 2.0 years ago by 43k • written 9.2 years ago by 100k
4
votes
2
replies
605
views
News: Standalone NCBI ClusteredNR database now available for download
ClusteredNR NCBI standalone BLAST
8 months ago by PeterC_NCBI ▴ 410
6
votes
2
replies
2.5k
views
News: Interested in de novo transcriptome assembly using Trinity? Check out our interview to Brian Haas
alignment RNA-Seq
updated 12 months ago by 43k • written 7.2 years ago by ★ 2.5k
0
votes
2
replies
720
views
News: Seascape Genomics in R
Genomics Seascape R
updated 17 months ago by 43k • written 18 months ago by ★ 2.5k
11
votes
2
replies
3.7k
views
News: Coursera: Computational Molecular Evolution
course
updated 14 months ago by 43k • written 11.0 years ago by 161k
3
votes
2
replies
3.8k
views
News: Course/Workshop: Informatics For Rna-Sequence Analysis (June, 2013)
RNA-seq
updated 14 months ago by 43k • written 11.3 years ago by 20k
4
votes
2
replies
1.3k
views
News: Hands-On Workshop: How to use bisulfite-treated sequencing to study DNA methylation (BS-Seq, Bisulfite-Seq, WGBS)
Workshop methylation bisulfite
updated 11 months ago by 43k • written 4.6 years ago by ★ 1.0k
7
votes
2
replies
2.3k
views
News: Upcoming Hands-On Workshop: microRNA Analysis Using Next-Generation Sequencing
NGS microRNA workshop
updated 13 months ago by 43k • written 7.9 years ago by 11k
1
vote
2
replies
1.6k
views
News: My own brand-new blog for bioinformatics learning
learning
updated 15 months ago by 43k • written 6.4 years ago by ▴ 100
0
votes
2
replies
1.3k
views
News: :: FINAL CALL :: Next-Generation Sequencing Data Analysis: A Practical Introduction (December 12-14, 2022 in Munich, Germany)
rnaseq dnaseq sequencing ngs workshop
17 months ago by David Langenberger 11k
0
votes
2
replies
3.5k
views
News: Course: Practical GWAS using Linux and R. 23-27 October 2017, Berlin (Germany)
GWAS Linux R
updated 11 months ago by 43k • written 6.7 years ago by ★ 2.5k
0
votes
2
replies
699
views
News: Reduced functionality of Ensembl and Ensembl Genomes on the 13th November
ensembl
updated 11 months ago by 43k • written 4.5 years ago by 23k
8
votes
2
replies
907
views
News: Save time and money through improved onboarding of your NGS data scientists
NGS data-analysis
updated 13 months ago by 43k • written 4.3 years ago by 11k
0
votes
2
replies
2.6k
views
News: PART FUNDED SCHOLARSHIPS - Coding, data management, and Shiny applications using RStudio for evolutionary biologists and ecologists - May 2017
Rstudio R Shiny
updated 11 months ago by 43k • written 7.1 years ago by ▴ 110
1,000 results • Page 5 of 20
Recent Votes
Comment: GRCh38.gmap file
Answer: GRCh38.gmap file
Answer: GRCh38.gmap file
Answer: Design matrix Differential expression analysis
A: PCA plot from read count matrix from RNA-Seq
A: PCA plot from read count matrix from RNA-Seq
Answer: Design matrix Differential expression analysis
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Popular Question to psm ▴ 130
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Recent Replies
Comment: Design matrix Differential expression analysis by Gordon Smyth ★ 7.1k
> When is it recommended to use the design <- cbind(Intercept=1,Group=c(-1,-1,-1,1,1,1)) It is not recommended. No such code appears anywh…
Comment: GRCh38.gmap file by lorena9132 ▴ 10
Hi Mathew, The .txt files provided in the link differ from the .gmap files, but after several attempts, I succeeded in generating the .gma…
Answer: GRCh38.gmap file by Mathew ▴ 20
Hi, I have spent some time searching for a GRCH38 map file for you. I have found a certain publication that uses a hg38 genetic map file…
Answer: Association study using SNP data by Mathew ▴ 20
Hi, You asked three questions so I will attempt to help the best I can **What should be the optimal GC score cutoff** It sounds li…
Comment: Design matrix Differential expression analysis by SHN ▴ 40
Thank you for your explanation. I am working on the cell lines and I am investigating the effect of the treatment on the expression level, …
Answer: Issues with Mixture file when using CIBERSORTx by vjanve • 0
I ran into same issue of "duplicated gene symbol(s)": 1: In CIBERSORTxFractions(sigmatrix = sigmatrix, mixture = mixture, : 22292 dup…
Comment: creating batch colum for batch correction by Expert ▴ 10
Thank you for your response. These samples were collected from the same patient at different time points(day 0, 8 and 18) and these are ind…
Comment: creating batch colum for batch correction by ATpoint 82k
Not sure I follow. Can you first of all describe which comparisons you want to make, pretending there was no batch effect at all. Write dow…
Comment: Pindel Segmentation Fault Error by Ruqaiya • 0
This the tool still problematic?
Comment: Segmentation error while using a tool by Ruqaiya • 0
Thank you for the advice, i'll keep that in mind.
Comment: Segmentation error while using a tool by Ruqaiya • 0
I am trying to reproduce some bioinformatics data from a research paper-[this paper][1] as i was asked to work on an MRSA bioinfo project, …
Answer: Segmentation error while using a tool by Mensur Dlakic ★ 27k
Most likely you didn't do anything wrong. Going by your previous post that you have only 8 GB of RAM, the most likely reason is the lack of…
Comment: Segmentation error while using a tool by Thanujay S • 0
Hey @Ruqaiya! Can you please give more details on why smalt is opted here? According to what I can see, the tool has become obsolete! Why …
Comment: Extracting mutation status from MAF files - TCGA by Thanujay S • 0
Hey! Can you explain the question further? What have you tried?
Comment: Downloading older version of a tool by Ruqaiya • 0
I tried the 2nd option only. I got the files of older version from the author but that version isn't working on my WSL, it's showing Segmen…
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