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772
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164
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129k
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107 follow
News: The Biostar Handbook. A bioinformatics e-book for beginners.
training handbook
updated 8 weeks ago by 2.3k • written 7.0 years ago by 99k
122
votes
44
replies
10k
views
24 follow
News: Help Make Biostar Better! Add Your Feedback, Opinions And Suggestions.
meta biostars
updated 5 weeks ago by 41k • written 11.0 years ago by 99k
81
votes
39
replies
7.0k
views
11 follow
News: State Of Biostar - Future Directions (January 2013)
biostars
updated 9 months ago by 41k • written 10.9 years ago by 99k
59
votes
31
replies
4.4k
views
12 follow
News: Example of how bioinformaticians can publish in Scientific Reports (by nature publishing group) using publicly available NGS data
publication NGS
updated 7 months ago by 41k • written 6.9 years ago by 10k
11
votes
25
replies
5.7k
views
15 follow
News: Questions for the NCBI Next Generation Sequencing Online Workshop Can be Posted with the NCBI_NOW Tag
NCBI_NOW
updated 8 months ago by 41k • written 8.2 years ago by ▴ 330
54
votes
24
replies
3.9k
views
12 follow
News: Big news from Microsoft. BASH on windows.
windows
updated 8 months ago by 41k • written 7.7 years ago by ★ 3.2k
24
votes
21
replies
6.9k
views
9 follow
News: Misunderstood parameter of NCBI BLAST
blast alignment
updated 6 months ago by 41k • written 5.2 years ago by ★ 3.4k
45
votes
19
replies
6.2k
views
8 follow
News: Gamestorming For Bioinformatics
gamestorming
updated 9 months ago by 41k • written 11.2 years ago by 28k
15
votes
18
replies
7.8k
views
6 follow
News: New Free Community Tutorial Website For Bioinformatics Learning
ChIP-seq genome snp RNA-seq
updated 9 months ago by 41k • written 10.4 years ago by ▴ 610
10
votes
17
replies
3.1k
views
7 follow
News: Tell us what you think of the ENA browser?
ena
updated 7 months ago by 41k • written 7.1 years ago by ★ 1.8k
51
votes
17
replies
3.7k
views
News: Biostars 3.0 is now under testing. It has groups, charms and other interesting features.
meta biostars
updated 9 months ago by 41k • written 8.7 years ago by 99k
12
votes
17
replies
3.8k
views
6 follow
News: A programming language for living cells [Cello]
dna sequence research language
updated 8 months ago by 41k • written 7.7 years ago by 11k
46
votes
16
replies
5.6k
views
12 follow
News: Google announces DeepVariant
genome deep-learning google
updated 6 months ago by 41k • written 6.0 years ago by ▴ 990
11
votes
13
replies
2.9k
views
News: Ensembl datacentre shut-down: Friday 26th August - Tuesday 30th August 2016
Maintenance Ensembl
updated 8 months ago by 41k • written 7.3 years ago by ★ 2.3k
6
votes
13
replies
1.8k
views
News: Ensembl reduced functionality: 10th March-16th April 2020
BLAT VEP Ensembl service
updated 5 months ago by 41k • written 3.8 years ago by ★ 2.3k
19
votes
11
replies
6.7k
views
News: Solid Software Tools: Denovo Assembly/Xsq Tools Pipeline Mirrored At Biostar
SOLID
updated 9 months ago by 41k • written 11.3 years ago by 99k
21
votes
11
replies
9.2k
views
6 follow
News: NovaSeq from Illumina (updated info)
illumina NovaSeq
updated 7 months ago by 41k • written 6.9 years ago by 136k
11
votes
11
replies
1.6k
views
8 follow
News: Python Data Visualization Course. Last 3 spots left
next-gen
updated 6 months ago by 41k • written 5.0 years ago by ★ 2.4k
14
votes
11
replies
2.7k
views
6 follow
News: Announcing bioSyntax: Syntax highlighting for biological files
computational-biology
updated 6 months ago by 41k • written 5.9 years ago by ▴ 170
7
votes
11
replies
1.8k
views
News: Bringing the power of Big Data to biomedical researchers
NGS biomedical-research
updated 6 months ago by 41k • written 6.3 years ago by ▴ 100
17
votes
9
replies
3.6k
views
News: My Ncbi Curriculum Vitae Web Application: Sciencv
ncbi
updated 9 months ago by 41k • written 10.2 years ago by 158k
11
votes
9
replies
7.4k
views
News: NovaSeq quality analysis
sequencing
updated 6 months ago by 41k • written 6.5 years ago by 19k
13
votes
9
replies
2.4k
views
7 follow
News: Inviting NEW Biostars moderators to join Biostars slack channel
slack moderator
8 weeks ago by GenoMax 136k
6
votes
9
replies
4.1k
views
News: 1000 Genomes : The Initial Phase 3 variant list and phased genotypes.
1000genomes
updated 9 months ago by 41k • written 9.4 years ago by 158k
0
votes
9
replies
2.2k
views
News: Practical Genomics: From Biology to Biostatistics Workshop (Baltimore, MD)
workshop
updated 9 months ago by 41k • written 9.4 years ago by 10k
22
votes
9
replies
6.5k
views
News: Epigenetics Workshop - DNA Methylation Data Analysis
bisulfite-sequencing workshop epigenetics
updated 11 months ago by 41k • written 8.5 years ago by 10k
13
votes
8
replies
2.6k
views
News: NCBI is going to eliminate GI identifiers
ncbi GI
updated 8 months ago by 41k • written 7.7 years ago by ★ 2.9k
12
votes
8
replies
3.3k
views
News: 'Potential Rna-Dna Binding Site In Alu Repeat', Or 'Why Should I Allow Multiple Mapping Positions When Analyzing Chipseq Data?'
chipseq rna
updated 9 months ago by 41k • written 10.4 years ago by 10k
7
votes
8
replies
1.7k
views
News: A new Stack Exchange site for Research Computing
unix linux
updated 6 months ago by 41k • written 6.0 years ago by ▴ 690
12
votes
8
replies
6.9k
views
News: rRNA Depletion / Poly-A Selection Responsible for RNA-seq Bias
rRNA-depletion RNA-seq-bias
updated 9 months ago by 41k • written 9.4 years ago by ▴ 640
38
votes
8
replies
1.3k
views
6 follow
News: What happens when a bioinformatician has his own genome sequenced for $300?
DNAseq DNA WGS
updated 5 months ago by 35k • written 5 months ago by 10k
8
votes
8
replies
2.7k
views
News: Coronavirus Genome Analysis: a new volume in the Biostar Handbook
biostar-handbook education
updated 5 months ago by 41k • written 3.7 years ago by 99k
6
votes
7
replies
5.2k
views
News: Illumina Nextseq 500 And Hiseq X Ten: Newer Tech Lowering Cost Per Mbp
Illumina
updated 9 months ago by 41k • written 9.9 years ago by ▴ 640
6
votes
7
replies
2.0k
views
News: NCBI wants to remove quality scores from SRA
quality-scores trimming Assembly genome SRA
updated 5 months ago by 41k • written 3.4 years ago by ▴ 40
38
votes
7
replies
1.9k
views
News: 2 last seats available - 7th Berlin Summer School in NGS Data Analysis (September 4-8 in Berlin)
Transcriptomics DNA-Seq Variant-Calling RNA-Seq
4 months ago by David Langenberger 10k
25
votes
7
replies
6.1k
views
News: Pubmed Commons : A System That Enables Researchers To Share Their Opinions About Scientific Publications
ncbi pubmed
updated 9 months ago by 41k • written 10.1 years ago by 158k
23
votes
7
replies
4.4k
views
News: Research accounts on GitHub
github git
updated 9 months ago by 41k • written 9.6 years ago by 158k
2
votes
7
replies
1.6k
views
News: Beyond pest control: What can we learn from parasites?
docking heme parasitism in-silico
updated 6 months ago by 41k • written 4.7 years ago by 53k
10
votes
7
replies
2.2k
views
News: Free draft copy of book on bioinformatics tools
alignment Assembly RNA-seq next-gen
updated 10 months ago by 41k • written 8.5 years ago by ★ 1.1k
21
votes
7
replies
7.6k
views
News: Survey: Rna-Seq Analysis For Differential Gene/Transcript Expression [Updated With Results]
transcript RNA-seq gene
updated 9 months ago by 41k • written 11.0 years ago by ▴ 250
24
votes
7
replies
4.3k
views
News: #Bioinformatics Crowdcoding
crowd-coding
updated 9 months ago by 41k • written 10.4 years ago by 158k
27
votes
7
replies
3.5k
views
News: The Biostar Swarm: A Visualization
biostars
updated 9 months ago by 41k • written 10.8 years ago by 99k
2
votes
7
replies
1.6k
views
News: Bioinformatics workshop or training courses
RNA-Seq next-gen ChIP-Seq
updated 6 months ago by 41k • written 5.3 years ago by ▴ 140
12
votes
7
replies
3.7k
views
News: Welcome Ensembl REST with more endpoints!
ensembl rest-api
updated 8 months ago by 41k • written 9.1 years ago by ★ 5.2k
8
votes
6
replies
17k
views
News: Bioinformatics PhD Programs in the US
education PhD
updated 6 months ago by 41k • written 6.0 years ago by ▴ 70
8
votes
6
replies
1.4k
views
News: Illumina to Acquire Pacific Biosciences
pacbio illumina
updated 6 months ago by 41k • written 5.1 years ago by 99k
14
votes
6
replies
6.9k
views
News: FINAL CALL: NGS Workshop - A Beginner's Guide to NGS Data Analysis (2 last seats)
NGS RNA-Seq workshop
updated 12 months ago by 41k • written 8.4 years ago by 10k
17
votes
6
replies
8.8k
views
News: Final registration deadline: September 15th - Bioinformatics Hands-On NGS Data Analysis Workshops 2014
methylation RNA-seq
updated 9 months ago by 41k • written 9.7 years ago by 10k
3
votes
6
replies
2.5k
views
News: Brief Getting Started with Broad Firecloud tutorial posted
RNA-Seq
updated 8 months ago by 41k • written 7.4 years ago by 26k
9
votes
6
replies
2.0k
views
News: No more hidden solutions in bioinformatics
precision-medicine genome-sequencing
updated 10 months ago by 41k • written 8.5 years ago by ★ 1.2k
1,000 results • Page 1 of 20
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Comment: Bioinformatics: what do you think of it in the next 20 years?
Comment: KEGG DATABASE
Answer: From TPM to raw counts
Answer: GENE ONTOLOGY FOR TOMATO-ITAG4.1 OR 4
Answer: From TPM to raw counts
Comment: From TPM to raw counts
NOEL: An extremely fast Non-Overlapping Exon Length calculator written in Rust
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Answer: sequencing data from different samples in the Integrative Genome Viewer (IGV) by dunia.aburizeg ▴ 40
Check out their documentation on the official IGV website. There is also a YouTube channel for IGV that can be a good start.
Comment: Error in blast+ by Shahin • 0
Spaces are not much better in Linux either. Better never use spaces in naming files, and directories, and column names in SQL Database stru…
Comment: Which language use as a beginner in Bioinformatics and Computational genomics by rpolicastro 12k
awk is turing complete /s
Comment: sequencing data from different samples in the Integrative Genome Viewer (IGV) by rpolicastro 12k
Generally we don't provide answers for assignments here. As a *very* generic hint you can download the human reference and variants from pl…
Comment: Understanding gene level copy number data from TCGAbiolinks by bioinfo355 • 0
Were you able to get answer for your questions?
Answer: Error in blast+ by Mensur Dlakic ★ 25k
Joys of doing Bioinformatics on Windows, and consequently dealing with spaces in file and directory names. I suggest you move your datab…
Comment: Which language use as a beginner in Bioinformatics and Computational genomics by Mensur Dlakic ★ 25k
I assume here you mean the usefulness for common tasks such as file manipulation and pipeline creations. How would one do sequence assembly…
Answer: Which language use as a beginner in Bioinformatics and Computational genomics by Mensur Dlakic ★ 25k
There is no single language that is best suited for all areas of Bioinformatics. If one's main interest is RNA-seq, R will probably be more…
Comment: Which language use as a beginner in Bioinformatics and Computational genomics by Brian Bushnell 19k
It depends on specifically what you will be doing. But IMO the order of importance is Bash > Python > R.
Comment: Bam files generated with STAR cause a segmentation fault core dump error when us by bkffadia • 0
![Galaxy Command Line][1] [1]: /media/images/8c45586a-e3e3-46dd-b06b-a9788a6e
Comment: RNA seq by Istvan Albert 99k
there is no need to "average" anything, the point of replicates and RNA-Seq in general, is to measure the same thing several times and use …
Answer: Which language use as a beginner in Bioinformatics and Computational genomics by Istvan Albert 99k
I would say every scientist needs to know R - so if you don't know R it would serve you well to learn it. In my opinion Python is not we…
Answer: using RMA normalized microarray in Limma by ATpoint 78k
Arrays do not have counts. RMA-proceased data are fine. See limma user guide.
Comment: RNA seq by ATpoint 78k
What is the question? I assume you googled 'differential RNA-seq' and tried the obvious tools such as DESeq2 and limma?
Answer: Can't install hisat2 with miniconda by Istvan Albert 99k
You have installed the wrong version of conda. Even on M1 (arm64 CPU) you need to be using the Intel-based (x64 CPU) conda installer. So …
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