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233 results • Page
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715
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159
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100 follow
News:
The Biostar Handbook. A bioinformatics e-book for beginners.
training
tutorial
News
handbook
updated 4 months ago by
Biostar
1.5k • written 6.2 years ago by
Istvan Albert
96k
11
votes
25
replies
4.9k
views
15 follow
News:
Questions for the NCBI Next Generation Sequencing Online Workshop Can be Posted with the NCBI_NOW Tag
NCBI_NOW
News
updated 4 months ago by
Ram
37k • written 7.4 years ago by
DCGenomics
▴ 320
57
votes
24
replies
5.4k
views
14 follow
News:
Join us in building a bioinformatics resource: The Biostar Handbook
biostar-handbook
updated 4 months ago by
Ram
37k • written 7.4 years ago by
Istvan Albert
96k
50
votes
17
replies
3.2k
views
News:
Biostars 3.0 is now under testing. It has groups, charms and other interesting features.
biostar
meta
updated 7 months ago by
Ram
37k • written 7.9 years ago by
Istvan Albert
96k
21
votes
16
replies
5.0k
views
6 follow
News:
Pandora's Toolbox - a collection of bioinformatics programs
Assembly
alignment
RNA-Seq
updated 10 months ago by
Ram
37k • written 8.1 years ago by
ugly.betty77
★ 1.1k
6
votes
13
replies
1.4k
views
News:
Ensembl reduced functionality: 10th March-16th April 2020
Ensembl
VEP
BLAT
service
News
5 months ago by
Ben_Ensembl
★ 2.2k
19
votes
11
replies
6.3k
views
News:
Solid Software Tools: Denovo Assembly/Xsq Tools Pipeline Mirrored At Biostar
News
updated 9 months ago by
Ram
37k • written 10.4 years ago by
Istvan Albert
96k
8
votes
10
replies
3.4k
views
News:
New versions of Minia and DSK (2.0.x)
minia
dsk
assembly
gatb
updated 9 months ago by
Ram
37k • written 8.0 years ago by
Rayan Chikhi
★ 1.5k
22
votes
9
replies
5.9k
views
News:
Epigenetics Workshop - DNA Methylation Data Analysis
bisulfite-sequencing
workshop
epigenetics
updated 4 weeks ago by
Ram
37k • written 7.7 years ago by
David Langenberger
9.8k
27
votes
9
replies
3.5k
views
News:
OSX 10.11 released 30th Sep will be "rootless"
mac
osx
updated 4 months ago by
Ram
37k • written 7.4 years ago by
John
13k
7
votes
8
replies
3.6k
views
News:
Next-Gen Sequencing Tutorials On Cubelp (Cranfield Bioinformatics Electronic Learning Platform)
genome
chip-seq
snp
assembly
updated 4 months ago by
Ram
37k • written 9.5 years ago by
rob234king
▴ 610
8
votes
8
replies
2.2k
views
News:
Coronavirus Genome Analysis: a new volume in the Biostar Handbook
biostar handbook
bioinformatics
education
News
written 2.9 years ago by
Istvan Albert
96k
25
votes
7
replies
2.3k
views
6 follow
News:
Who qualifies to be a bioinformatician?
resume
bioinformatician
vc
updated 7 months ago by
Ram
37k • written 7.8 years ago by
Pierre Lindenbaum
152k
6
votes
7
replies
2.5k
views
News:
New in DiffBind: dba.plotProfile() - Peak profiles and profile heatmaps
DiffBind
ChIP-seq
deepTools
visualization
ATAC-seq
4 months ago by
Rory Stark
★ 1.6k
17
votes
7
replies
8.4k
views
News:
Upcoming NGS Workshop: A Beginner's Guide to NGS Data Analysis
workshop
Assembly
transcriptomics
RNA-Seq
updated 11 months ago by
Ram
37k • written 8.2 years ago by
David Langenberger
9.8k
10
votes
7
replies
1.9k
views
News:
Free draft copy of book on bioinformatics tools
alignment
Assembly
RNA-seq
next-gen
updated 16 days ago by
Ram
37k • written 7.7 years ago by
ugly.betty77
★ 1.1k
9
votes
6
replies
1.8k
views
News:
No more hidden solutions in bioinformatics
precision-medicine
genome-sequencing
updated 16 days ago by
Ram
37k • written 7.7 years ago by
HG
★ 1.2k
1
vote
6
replies
587
views
News:
Course - FLOW CYTOMETRY ANALYSIS WITH R/BIOCONDUCTOR
Bioconductor
FlowCytometry
R
updated 22 days ago by
synat.keam
▴ 70 • written 7 weeks ago by
carlopecoraro2
★ 2.2k
14
votes
6
replies
6.4k
views
News:
FINAL CALL: NGS Workshop - A Beginner's Guide to NGS Data Analysis (2 last seats)
NGS
RNA-Seq
workshop
updated 8 weeks ago by
Ram
37k • written 7.6 years ago by
David Langenberger
9.8k
1
vote
5
replies
585
views
News:
Cancer Genomics course - 2 seats left
Genomics
Cancer-Genomics
R
updated 2 days ago by
Ram
37k • written 28 days ago by
carlopecoraro2
★ 2.2k
0
votes
4
replies
1.7k
views
News:
What NGS courses would you like us to prepare for 2016? (one week left)
NGS
Survey
Workshop
updated 6 months ago by
Ram
37k • written 7.2 years ago by
David Langenberger
9.8k
14
votes
4
replies
3.0k
views
News:
FULL: NGS Data Analysis Workshop for Beginners in Munich (29 June - 1 Juli 2016)
RNA-Seq
next-gen
NGS
updated 6 months ago by
Ram
37k • written 7.0 years ago by
David Langenberger
9.8k
10
votes
4
replies
569
views
News:
Good morning
good
morning
updated 4 months ago by
Istvan Albert
96k • written 4 months ago by
Kevin Blighe
84k
8
votes
4
replies
1.5k
views
News:
supporting vg users on biostars
vg
graph
vgteam
genome
News
variation
updated 7 weeks ago by
colindaven
4.4k • written 3.4 years ago by
Erik Garrison
★ 2.3k
3
votes
4
replies
1.7k
views
News:
OmicCircos was updated
R
OmicCircos
updated 8 months ago by
Ram
37k • written 7.9 years ago by
yhu
▴ 50
0
votes
4
replies
370
views
News:
Ensembl Release 104 and newer GTF files no longer have genes sorted by position
Ensembl
GTF
updated 7 weeks ago by
Ben_Ensembl
★ 2.2k • written 10 weeks ago by
dlaehnemann
▴ 10
1
vote
4
replies
1.4k
views
News:
Bioconductor Development Visualization
bioconductor
updated 7 months ago by
Ram
37k • written 7.8 years ago by
Sean Davis
26k
2
votes
3
replies
278
views
News:
NCBI Comparative Genome Viewer now allows searches for genes across aligned assemblies
Browser
NCBI
Alignments
Genome
7 weeks ago by
PeterC_NCBI
▴ 180
0
votes
3
replies
422
views
News:
NCBI BLAST ClusteredNR database now available for blastx and PSI-BLAST searches
PSI-BLAST
blastx
BLAST
NCBI
ClusteredNR
4 weeks ago by
PeterC_NCBI
▴ 180
20
votes
3
replies
2.3k
views
News:
Nature Comment: Core services: Reward bioinformaticians
career-path
updated 7 months ago by
Ram
37k • written 7.8 years ago by
rtliu
★ 2.2k
0
votes
3
replies
374
views
News:
Nvidia Clara Parabricks is FREE for R&D
nvidia
workflow
gpu
updated 7 weeks ago by
4galaxy77
2.6k • written 7 weeks ago by
Pierre Lindenbaum
152k
18
votes
3
replies
2.1k
views
News:
LAST CALL: Next-Generation Sequencing Data Analysis: A Practical Introduction (Frankfurt, Germany) - 2 seats left
DNA-Seq
NGS
Workshop
Variant-Calling
updated 6 months ago by
Ram
37k • written 5.9 years ago by
David Langenberger
9.8k
0
votes
3
replies
945
views
News:
Less Than One Month Remaining until the Submission Deadline for Phase 1 of the NCTR Indel Calling from Oncopanel Sequencing Data Challenge!
oncopanel
indel-calling
updated 7 weeks ago by
Ram
37k • written 7 months ago by
sarah_p
▴ 10
3
votes
3
replies
708
views
News:
Want to automate your NGS analyses and create reproducible/scalable pipelines? Join our hands-on Nextflow workshop!
nextflow
NGS
pipeline
9 months ago by
David Langenberger
9.8k
4
votes
3
replies
1.7k
views
News:
Proteomics and Genomics Submit your Research Journals
Research
Genomics
Journals
Proteomics
updated 9 weeks ago by
Ram
37k • written 7.6 years ago by
saichandh.perkannex
• 0
1
vote
2
replies
263
views
News:
Course: Network Analysis in R
NetworkAnalyis
R
12 days ago by
carlopecoraro2
★ 2.2k
15
votes
2
replies
10k
views
News:
Breaking News - Illumina MiniSeq
next-gen-sequencing
updated 6 months ago by
Ram
37k • written 7.1 years ago by
IV
★ 1.3k
7
votes
2
replies
2.1k
views
News:
Annotation of Zebrafish pri-miRNAs promoters and CAGE-seq detected active Drosha processing events.
Drosha-processing
moRNAs
pri-miRNAs
zebrafish
updated 6 months ago by
Ram
37k • written 7.1 years ago by
Chirag Nepal
★ 2.3k
0
votes
2
replies
895
views
News:
:: FINAL CALL :: Next-Generation Sequencing Data Analysis: A Practical Introduction (December 12-14, 2022 in Munich, Germany)
rnaseq
dnaseq
sequencing
ngs
workshop
11 weeks ago by
David Langenberger
9.8k
3
votes
2
replies
3.5k
views
News:
Course/Workshop: Informatics For Rna-Sequence Analysis (June, 2013)
rna-seq
News
updated 4 months ago by
Ram
37k • written 10.1 years ago by
Obi Griffith
20k
0
votes
2
replies
538
views
News:
Online Course - A Practical Introduction to NGS Data Analysis (February 01-03, 2023)
NGS
DNAseq
variant-calling
RNAseq
11 days ago by
David Langenberger
9.8k
1
vote
2
replies
413
views
News:
New chat server (Discord) for bioinformatics
community
26 days ago by
Samuel Lampa
★ 1.3k
0
votes
2
replies
137
views
News:
NCBI update complete. Aspera users please update your client.
NCBI
Submissions
GenBank
2 days ago by
PeterC_NCBI
▴ 180
0
votes
2
replies
410
views
News:
Seascape Genomics in R
Genomics
Seascape
R
updated 8 weeks ago by
Ram
37k • written 3 months ago by
carlopecoraro2
★ 2.2k
0
votes
2
replies
2.1k
views
News:
MinION Community Meeting: Thursday Dec 3rd (now live)
minion
updated 6 months ago by
Ram
37k • written 7.2 years ago by
Istvan Albert
96k
2
votes
2
replies
1.7k
views
News:
BioC 2015, Bioconductor Annual Conference, July 20-22, Seattle, WA
Bioconductor
Conference
updated 7 months ago by
Ram
37k • written 7.8 years ago by
Martin Morgan
★ 1.6k
1
vote
2
replies
515
views
News:
Online training - Introduction to Nextflow
Bionfirmatics
Pipeline
Workflow
Netflow
6 months ago by
carlopecoraro2
★ 2.2k
0
votes
2
replies
1.8k
views
News:
NVIDIA GPU Conference sponsorship for Biostars + updated advertising terms
biostars
meta
updated 9 months ago by
Ram
37k • written 8.0 years ago by
Istvan Albert
96k
1
vote
2
replies
294
views
News:
Gene Set Enrichment Analysis in R/Bioconductor
Gene-Set-Enrichment-Analysis
R
Cancer-Genomics
GSEA
3 months ago by
carlopecoraro2
★ 2.2k
0
votes
2
replies
530
views
News:
ClusteredNR NCBI BLAST database provides faster searches and more informative BLAST results
NCBI
BLAST
9 months ago by
PeterC_NCBI
▴ 180
233 results • Page
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Deseq2 with one factor and multiple levels
Answer: Error while trying to install salmon
Answer: Forcing Installation Of DMRcate
Gene Expression Omnibus Data Mining (IA): Quick and easy download of GEO data
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1000 genomes project reference panel - GRCh38
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Recent Replies
Comment: Network analysis for two Factors
by
seidel
10k
Have you looked at any tutorials? Three are many out there. ([1][1], [2][2], [3][3], [etc.][4]) Do you have a preferred language? [1]: …
Comment: ceres score in crispr screen
by
seidel
10k
Are you looking for moral support or technical support? Have you tried using it with an older version of R and bioconductor? (i.e. circa 20…
Comment: PLINK2 selecting variants based on INFO score
by
chrchang523
9.9k
If you aren't willing to provide more precise information than this, sufficient for a reader to reproduce what you're seeing, I will delete…
Answer: Error while trying to install salmon
by
Chris
▴ 10
Donwloading the package from conda (https://anaconda.org/conda-forge/boost/files?version=1.60.0) worked for me wget https://anaconda.org/…
Answer: finding error to run edgeR, error in ploting MDS and after that in model matrix
by
Gordon Smyth
★ 5.4k
First issue is that GEO series matrix files can't be read using `read.delim`. Second issue is the data are from Agilent microarrays and …
Comment: PLINK2 selecting variants based on INFO score
by
m.c.roozen
• 0
I have tried that (the .pvar file contains the "1:10586" form as ID which I mentioned above) which leads to the same output as above, 0 var…
Answer: samtools markdup in Rsamtools
by
joe
▴ 350
You can run any system command from inside R using `system()`. This works well if there is a single command without many dependencies. For …
Comment: samtools markdup in Rsamtools
by
Pierre Lindenbaum
152k
> But other solutions are also fine: bash, nextflow, snakemake
Answer: samtools markdup in Rsamtools
by
ATpoint
68k
My honest opinion: Do processing of sequencing data on the standard command line with samtools. There is no need for the added complexity t…
Comment: To batch correct or analyse separately?
by
predeus
★ 1.8k
Another great and up-to-date resource is this: https://www.sc-best-practices.org/preamble.html
Comment: PLINK2 selecting variants based on INFO score
by
chrchang523
9.9k
The --exclude file must use the same variant IDs as your .pvar file. You should elaborate on what seemed to go wrong when you tried to arr…
Comment: phylogeny
by
炫
• 0
Hello, my problem is the same as yours, did you finally solve this problem?
Comment: phylogeny
by
炫
• 0
您好,我的问题和您的一模一样,请问您这个问题最终解决了吗
Comment: Issue with hmmcalibrate during tutorial.
by
apcreyes29
• 0
If that's the case then I'll just proceed then. Thank you!
Answer: To batch correct or analyse separately?
by
ATpoint
68k
Instead of writing that all down I recommend to read the relevant part of the Bioconductor scRNA-seq book (OSCA) which covers the "how's" a…
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