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1,000 results • Page
1 of 20
Sort: Votes
Rank
Views
Votes
Replies
23
votes
22
replies
37k
views
6 follow
Converting VCF to PLINK .bed binary fileset to check for pedigree errors with KING: How do conversion tools make the PLINK .fam file, without asking …
plink
vcf
fam
gatk
vcftools
updated 3 months ago by
Nicole
• 0 • written 4.9 years ago by
gaelgarcia
▴ 250
19
votes
15
replies
25k
views
8 follow
Converting SNP from chr:pos to rs number using PLINK?
plink
SNP
updated 7 months ago by
Ram
38k • written 7.2 years ago by
dam4l
▴ 180
18
votes
19
replies
1.6k
views
6 follow
Extremely important marker gene has many reads based on IGV viewer but no quantified reads
rna-seq
sequencing
igv
alignment
next-gen
updated 3 months ago by
Ram
38k • written 4.2 years ago by
rbkh09
• 0
18
votes
4
replies
8.1k
views
How To Find Rna-Seq Data Of Published Papers?
geo
next-gen
RNA-seq
updated 25 days ago by
Ram
38k • written 9.6 years ago by
user
▴ 930
18
votes
7
replies
804
views
How to calculate if statistically a variable of a bulk RNA-seq affects the comparison of interest?
DESeq2
Variable
RNA-seq
6 months ago by
Rafael Soler
★ 1.1k
16
votes
38
replies
15k
views
Differential gene Analysis by Limma
Limma
Microarray
R
updated 11 months ago by
Ram
38k • written 8.1 years ago by
Mo
▴ 920
14
votes
5
replies
2.7k
views
bioinformatics basic training
genome
updated 11 days ago by
Ram
38k • written 8.3 years ago by
f.muoghalu
• 0
12
votes
8
replies
598
views
Align 16S sequence to a reference
16S
sequence
alignment
updated 6 months ago by
Matthias Zepper
3.4k • written 6 months ago by
A_heath
▴ 120
12
votes
13
replies
2.1k
views
Gene Expression and Systems Biology (homework)
gene
homework
updated 3 months ago by
Ram
38k • written 7.7 years ago by
sarathkurichiyil
• 0
11
votes
9
replies
2.1k
views
samtools piping with awk/ bash commands -> Wonky things happen!!!
bash
samtools
awk
updated 3 months ago by
Ram
38k • written 7.8 years ago by
QVINTVS_FABIVS_MAXIMVS
★ 2.5k
10
votes
8
replies
1.9k
views
Blast scores...two annotations for the same piece of sequence
alignment
updated 9 months ago by
Ram
38k • written 8.0 years ago by
friasoler
▴ 30
10
votes
5
replies
6.3k
views
how to remove asterisk characters from a translated sequences (fasta format)?
sequencing
Assembly
alignment
updated 7 months ago by
Ram
38k • written 7.6 years ago by
seta
★ 1.8k
10
votes
11
replies
8.2k
views
How to adjust my manhattan plot to look better?
qqman
manhattan
R
updated 9 months ago by
Ram
38k • written 8.0 years ago by
SheelS
▴ 40
10
votes
6
replies
2.6k
views
which language to use for such a bioinformatics web services infrastructure?
web-services
java
updated 3 days ago by
Ram
38k • written 7.8 years ago by
lait
▴ 170
10
votes
15
replies
5.2k
views
convert fasta/gb to vcf
fasta
vcf
genbank
gff
updated 2 days ago by
Ram
38k • written 4.5 years ago by
marongiu.luigi
▴ 670
9
votes
7
replies
782
views
Reference genome location
reference
positions
FASTA
alignment
genome
updated 11 weeks ago by
barslmn
★ 1.3k • written 12 weeks ago by
Batel
• 0
9
votes
2
replies
359
views
Answer needed urgently
Deep
updated 6 months ago by
Mensur Dlakic
★ 23k • written 6 months ago by
Deepak
• 0
9
votes
1
reply
5.4k
views
Why does MACS2 report multiple records for the same peak region?
ChIP-Seq
macs
macs2
updated 7 months ago by
Ram
38k • written 7.4 years ago by
James Ashmore
★ 3.4k
9
votes
9
replies
1.4k
views
Which hg38 file?
reference
hg38
NCBI
updated 7 months ago by
appropiate
▴ 80 • written 7 months ago by
amy__
▴ 50
9
votes
4
replies
405
views
RNA seq, secreted protein
protein
gene
secreted
updated 3 months ago by
Joe
20k • written 3 months ago by
Rob
▴ 160
9
votes
14
replies
3.7k
views
Explanation on Paired end single index for RNA seq
RNA-Seq
updated 11 months ago by
Ram
38k • written 8.2 years ago by
hothriananya
▴ 70
9
votes
1
reply
3.2k
views
RNA-SeQC, EVER-seq, RSeQC and CollectRnaSeqMetrics, which to use and *why*?
RNA-Seq
qc
updated 7 months ago by
Ram
38k • written 7.8 years ago by
Niek De Klein
★ 2.6k
9
votes
4
replies
5.2k
views
How to analyse normalized read count?
RNA-Seq
R
updated 11 weeks ago by
Ram
38k • written 7.8 years ago by
pbio
▴ 150
9
votes
7
replies
686
views
ChIP-seq; investigate binding within region of tRNA genes
tRNA
ChIP
nf-core
ChIP-seq
updated 10 months ago by
Ram
38k • written 11 months ago by
2138493o
▴ 20
9
votes
16
replies
2.9k
views
6 follow
covert SAM to full length fasta
fasta
SAM
updated 2 days ago by
Ram
38k • written 4.6 years ago by
marongiu.luigi
▴ 670
9
votes
20
replies
3.2k
views
Solve SAM issues flagged by Picard's ValidateSamFile
Picard
SAM
updated 2 days ago by
Ram
38k • written 4.6 years ago by
marongiu.luigi
▴ 670
9
votes
4
replies
1.9k
views
[Code] Converte fasta/fa files to fastq
perl
fastq
sed
fasta
updated 7 months ago by
Ram
38k • written 7.4 years ago by
Shicheng Guo
★ 9.3k
8
votes
3
replies
524
views
Package installation error using Bioconda
antismash
Bioconda
3 months ago by
A_heath
▴ 120
8
votes
2
replies
5.4k
views
Differential gene expression analysis in Python
python
R
updated 6 weeks ago by
Ram
38k • written 17 months ago by
Leendert
▴ 30
8
votes
13
replies
751
views
Mapped reads not mapping to a real sequence?
bam
sam
samtools
kallisto
5 weeks ago by
txema.heredia
▴ 70
8
votes
3
replies
5.0k
views
Bioinformatics project for a beginner
projects
updated 8 months ago by
Ram
38k • written 7.3 years ago by
dharshank.1096
▴ 30
8
votes
4
replies
1.7k
views
using different tools to identify differential exprssed genes
rna-seq
RNA-Seq
R
updated 5 months ago by
Ram
38k • written 7.6 years ago by
Anushka
▴ 20
8
votes
25
replies
1.9k
views
construction of a database
sql
noSQL
neo4j
database
updated 3 days ago by
Ram
38k • written 22 months ago by
Debut
▴ 20
8
votes
9
replies
2.1k
views
6 follow
Big difference in estimated duplicate reads between forward and reverse of paired-end RNA-seq
RNA-Seq
duplication
fastqc
updated 9 months ago by
rohitsatyam102
▴ 690 • written 3.4 years ago by
Eric Lim
★ 2.0k
8
votes
6
replies
754
views
How to apply bioinformatic in vaccine design?
Vaccine
updated 4 months ago by
Dunois
★ 2.3k • written 4 months ago by
Jean
▴ 50
8
votes
20
replies
1.8k
views
Converting runpsipred Script to Work on Windows OS
psipred
windows
updated 10 months ago by
Ram
38k • written 4.7 years ago by
Bara'a
▴ 270
8
votes
9
replies
2.6k
views
error in rstudio
csv
matrix
rstudio
updated 5 months ago by
Ram
38k • written 7.6 years ago by
fi1d18
★ 4.1k
8
votes
11
replies
1.2k
views
using STAR instead of HISAT2
STAR
updated 7 months ago by
Ram
38k • written 8 months ago by
Chris
▴ 70
8
votes
5
replies
3.1k
views
Is it possible to guess sequencing platform used based on a FASTQ/BAM file?
BAM
FASTQ
updated 3 months ago by
Ram
38k • written 7.8 years ago by
Andrew
▴ 60
8
votes
5
replies
11k
views
samtools tview symbols
samtools
updated 4 months ago by
Ram
38k • written 7.7 years ago by
biolab
★ 1.4k
8
votes
12
replies
2.4k
views
Use BLAST Command Line Applications to run a folder of many sequences against a database
BLAST
updated 7 days ago by
Ram
38k • written 19 months ago by
daver.v
▴ 30
7
votes
4
replies
1.2k
views
So many Zeros (read counting)_NGS sequence analysis with R / Bioconductor: RNA-Seq workflow
alignment
RNA-Seq
R
updated 10 days ago by
Ram
38k • written 4.7 years ago by
healing80
• 0
7
votes
9
replies
767
views
Tools to check the length of isoforms in reference transcript
transcript
histogram
isoform
5 months ago by
Jjbox
▴ 40
7
votes
8
replies
1.7k
views
How can we time a recent gene duplication event using (neutral?) DNA mutations as molecular clock?
molecular-clock
gene-duplication
phylogeny
updated 7 weeks ago by
Ram
38k • written 7.9 years ago by
xiaofeng.dong12
▴ 20
7
votes
6
replies
1.3k
views
How to get/calculate coverage of a gene using bed file?
bed
coverage
gene
updated 2 days ago by
Ram
38k • written 16 months ago by
Nikhil
▴ 10
7
votes
8
replies
3.4k
views
remove duplicated entries from BLAST result file
blast
alignment
updated 3 months ago by
Ram
38k • written 7.8 years ago by
Kumar
▴ 150
7
votes
4
replies
2.8k
views
Mapping BAM/SAM file back to reference?!?!
SAM
reference
BWA
BAM
updated 6 months ago by
Ram
38k • written 7.5 years ago by
ab.tsubaki
▴ 50
7
votes
4
replies
4.0k
views
IGV genome browser problems
igv
updated 3 months ago by
Ram
38k • written 7.7 years ago by
Marvin
▴ 210
7
votes
7
replies
958
views
GSEA analysis
Hi
updated 11 months ago by
cvenkat95
▴ 10 • written 11 months ago by
sarahawan92
▴ 10
7
votes
13
replies
3.6k
views
DESeq2: can I correct for relatedness when using data from multiplex families?
DESeq2
RNA-Seq
Multiplex-families
updated 11 months ago by
Ram
38k • written 8.1 years ago by
alesssia
▴ 580
1,000 results • Page
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by
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after alignment, it occurs in different sizes of gaps
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Try this so you'll see that using [tabulate](https://github.com/astanin/python-tabulate) to print the dataframe causes it to respect the li…
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Do not add answers unless you're answering the top level question. Given that you've opened a new question, I'm deleting this post.
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Lol I started writing first, then discovered each issue as I was writing. All I saw was the `-0` but then oh my goodness, so many problems!
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oh , Ram was too fast ! :-D
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153k
1) your [standard][1] output is redirected to the terminal instead of a [file][2]. 2) there is no such option `-0` (zero) . your want …
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