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questions
1
vote
3
replies
1.0k
views
How to extract de novo transcript from RNA long read alignement ?
RNA
pacbio
updated 3.5 years ago by
Juke34
8.8k • written 3.5 years ago by
sacha
★ 2.4k
3
votes
7
replies
3.3k
views
How can I get the uncompressed size of a BGZIP file ?
bgzip
gzip
binary
updated 3.2 years ago by
Poshi
▴ 10 • written 3.8 years ago by
sacha
★ 2.4k
1
vote
8
replies
6.2k
views
6 follow
How to plot venn diagram from vcf-compare output ?
vcf-compare
venn
plot
updated 17 months ago by
stephane.plaisance
• 0 • written 7.3 years ago by
sacha
★ 2.4k
4
votes
3
replies
1.5k
views
Call alternative base for each position in a bam file
bam
calling
updated 4.2 years ago by
dariober
14k • written 4.2 years ago by
sacha
★ 2.4k
2
votes
1
reply
1.0k
views
concordance metrics for exome trio analysis
exome
vcf
SNP
updated 4.6 years ago by
Vivek
★ 2.7k • written 4.6 years ago by
sacha
★ 2.4k
1
vote
1
reply
1.3k
views
Twist Bioscience BAM example
capture
bam
data
twist
updated 4.9 years ago by
Biostar
20 • written 6.3 years ago by
sacha
★ 2.4k
2
votes
1
reply
1.2k
views
Is there a benefict of denoising reads for project that are not using 16S amplicon ?
16S
denoising
illumina
amplicon
updated 5.6 years ago by
Asaf
10k • written 5.6 years ago by
sacha
★ 2.4k
1
vote
0
replies
1.3k
views
How can view haplotype from GnomAD
haplotype
haploview
gnomad
5.7 years ago by
sacha
★ 2.4k
1
vote
1
reply
1.0k
views
t-rna gene symbol nomenclature
gene name
terminology
rna
5.8 years ago by
sacha
★ 2.4k
5
votes
11
replies
9.3k
views
Extract sequence from fasta using primer
pcr
fasta
primer
extract
updated 5.9 years ago by
m.schmitt
▴ 10 • written 8.0 years ago by
sacha
★ 2.4k
5
votes
4
replies
1.4k
views
find major transcript from a specific tissue
RNA-Seq
database
updated 6.0 years ago by
Kristoffer Vitting-Seerup
★ 4.1k • written 6.0 years ago by
sacha
★ 2.4k
6
votes
4
replies
1.3k
views
Pipeline for trusight RNA fusion kit
RNA-Seq
updated 6.0 years ago by
Charles Warden
8.3k • written 6.0 years ago by
sacha
★ 2.4k
1
vote
5
replies
3.8k
views
Does anybody success to download data using icgc-storage-client ?
icgc
updated 18 months ago by
Ram
44k • written 8.6 years ago by
sacha
★ 2.4k
5
votes
4
replies
2.5k
views
increase BWA sensitivity
bwa
hg19
metagenomics
updated 6.5 years ago by
h.mon
35k • written 6.5 years ago by
sacha
★ 2.4k
7
votes
9
replies
8.3k
views
6 follow
plot a bedgraph
bed
bedgraph
plot
RNA-Seq
updated 2.6 years ago by
860101959
▴ 10 • written 6.5 years ago by
sacha
★ 2.4k
1
vote
1
reply
1.8k
views
Detect exon deletion/duplication from NGS amplicon
amplicon
ngs
cnv
updated 6.5 years ago by
Eric T.
★ 2.8k • written 6.5 years ago by
sacha
★ 2.4k
9
votes
10
replies
2.0k
views
reads y-position in a bam viewer
IGV
bam
position
6.5 years ago by
sacha
★ 2.4k
2
votes
2
replies
1.3k
views
Align and print steam-loop
mir
alignment
loop
6.5 years ago by
sacha
★ 2.4k
9
votes
2
replies
4.3k
views
How to get exon number from position from script?
rest-api
exon
updated 19 months ago by
Ram
44k • written 9.4 years ago by
sacha
★ 2.4k
2
votes
2
replies
2.0k
views
How to compute phred score from a Sanger raw trace ?
sanger
phred
updated 6.6 years ago by
Biostar
20 • written 6.8 years ago by
sacha
★ 2.4k
6
votes
26
replies
3.1k
views
8 follow
spreadsheet tools alternative
excel
spreadsheet
gui
updated 7.0 years ago by
Alex Reynolds
35k • written 7.0 years ago by
sacha
★ 2.4k
0
votes
0
replies
1.3k
views
Localize the variant from the Crispr embryon editing paper
SNP
indel
localize
MYBPC3
7.1 years ago by
sacha
★ 2.4k
6
votes
9
replies
2.2k
views
REST API to run pipeline ( not Galaxy)
interface
pipeline
galaxy
launcher
7.4 years ago by
sacha
★ 2.4k
2
votes
2
replies
4.6k
views
Greengene : what is the "99" in OTU description?
greengenge
otu
taxonomy
updated 7.4 years ago by
timodonnell
▴ 80 • written 7.4 years ago by
sacha
★ 2.4k
8
votes
14
replies
6.0k
views
6 follow
MiSeq reagent kit version 3 : bad reads qualities
miseq
illumina
quality
phred
fastqt
updated 7.4 years ago by
h.mon
35k • written 7.4 years ago by
sacha
★ 2.4k
6
votes
9
replies
2.4k
views
R multiple parameters
R
parameter
code
7.4 years ago by
sacha
★ 2.4k
1
vote
7
replies
3.7k
views
Get coordinate of several primer fasta sequence
primers
coordinate
alignment
bed
fasta
7.5 years ago by
sacha
★ 2.4k
5
votes
2
replies
3.2k
views
Illumina fastq lane output
illumina
fastq
bcl
updated 7.5 years ago by
igor
13k • written 7.5 years ago by
sacha
★ 2.4k
0
votes
0
replies
1.3k
views
remove all leaves from greengene tree
newick
tree
greengene
7.6 years ago by
sacha
★ 2.4k
6
votes
5
replies
2.2k
views
Why annotation doesn't respect VCF field schema ?
vcf
format
variant
annotation
specification
updated 7.6 years ago by
EnsemblWill
▴ 570 • written 7.6 years ago by
sacha
★ 2.4k
1
vote
3
replies
1.5k
views
gene based annotation : Database or live computation ?
annotation
7.6 years ago by
sacha
★ 2.4k
3
votes
4
replies
1.4k
views
Verify a patient from his exome
exome
parental
id
7.8 years ago by
sacha
★ 2.4k
10
votes
4
replies
3.1k
views
Create a picture from a Bam file at specific position
bam
alignment
picture
updated 7.8 years ago by
karl.stamm
4.1k • written 7.8 years ago by
sacha
★ 2.4k
3
votes
6
replies
2.3k
views
fastqc quality leading reads are all same
fastqc
fastq
miseq
8.0 years ago by
sacha
★ 2.4k
5
votes
9
replies
1.7k
views
Hemoglobinose S mutation position
annotation
codon
position
8.1 years ago by
sacha
★ 2.4k
4
votes
4
replies
2.5k
views
Filter Fasta using regexp on header
Fasta
filter
header
regexp
updated 8.1 years ago by
shenwei356
8.6k • written 8.1 years ago by
sacha
★ 2.4k
2
votes
3
replies
1.8k
views
MIR name nomenclature
MIR
8.1 years ago by
sacha
★ 2.4k
5
votes
14
replies
3.1k
views
remove a percent of reads from a BAM file
BAM
remove
8.1 years ago by
sacha
★ 2.4k
2
votes
2
replies
2.9k
views
dereplication process in metagenomics
metagenomics
dereplication
8.1 years ago by
sacha
★ 2.4k
3
votes
7
replies
3.9k
views
looking for 16S RNA sequence consensus
RNA16s
sequence
8.1 years ago by
sacha
★ 2.4k
3
votes
5
replies
2.1k
views
Vcf strange representation of alt and ref
vcf
variant
updated 8.1 years ago by
swbarnes2
14k • written 8.1 years ago by
sacha
★ 2.4k
0
votes
3
replies
1.3k
views
Tool for Variant Normalization nomenclature
vcf
variant
normalization
updated 8.2 years ago by
Devon Ryan
104k • written 8.2 years ago by
sacha
★ 2.4k
8
votes
15
replies
7.3k
views
what sql schema to store a vcf file ?
sql
vcf
variant
annotation
8.2 years ago by
sacha
★ 2.4k
4
votes
3
replies
2.0k
views
hg19 annotation with sequence ontology
ontology
annotation
updated 8.2 years ago by
Denise CS
★ 5.2k • written 8.2 years ago by
sacha
★ 2.4k
5
votes
13
replies
4.0k
views
Count repeat sequence
repeat
dna
fasta
algorithm
updated 8.2 years ago by
Brian Bushnell
20k • written 8.2 years ago by
sacha
★ 2.4k
4
votes
2
replies
1.8k
views
compute count of position coverage with bedtools
bedtools
8.3 years ago by
sacha
★ 2.4k
6
votes
3
replies
1.9k
views
Compare random and non-random mutation distribution
statistics
pvalue
8.4 years ago by
sacha
★ 2.4k
24
votes
17
replies
2.6k
views
6 follow
awk filed with different separator
awk
oneliner
updated 8.4 years ago by
Biostar
20 • written 8.6 years ago by
sacha
★ 2.4k
7
votes
15
replies
3.6k
views
6 follow
Could you explain the percentage of A, C , G, T in hg19 ?
GC
percent
hg19
updated 2.2 years ago by
Ram
44k • written 8.7 years ago by
sacha
★ 2.4k
1
vote
1
reply
3.3k
views
Where Can I find Chromatograms from Sanger analysis ?
chromatograms
database
sanger
updated 8.6 years ago by
GenoMax
145k • written 8.6 years ago by
sacha
★ 2.4k
58 results • Page
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