Limit : all time
all time today this week this month this year
108,911 results • Page 2 of 2179
Sort: Votes
Rank Views Votes Replies
145
votes
56
replies
7.3k
views
17 follow
Forum: Suggesting The Removal Of Post Closing
biostars
updated 5 weeks ago by 38k • written 10.0 years ago by 96k
145
votes
34
replies
51k
views
17 follow
Tutorial: Working with MAF files (Mutation Annotation Format) from the TCGA (The Cancer Genome Atlas)
music cancer tcga mutation maf
updated 24 days ago by 38k • written 9.9 years ago by 5.9k
144
votes
68
replies
43k
views
18 follow
Tutorial: Network plot from expression data in R using igraph
microarray RNA-Seq R network
updated 7 days ago by 38k • written 5.3 years ago by 84k
144
votes
62
replies
9.3k
views
23 follow
Forum: Is The Biostar Fading? (Updated For 2014)
meta biostars
updated 5 weeks ago by 38k • written 12.0 years ago by ★ 2.9k
143
votes
30
replies
126k
views
25 follow
Useful Bash Commands To Handle Fasta Files
command-line command-line fasta list bash
updated 6 months ago by 38k • written 11.1 years ago by ★ 2.9k
143
votes
14
replies
20k
views
15 follow
What Are The Classic Papers In Bioinformatics?
literature papers history
updated 24 months ago by 21k • written 12.4 years ago by 18k
143
votes
33
replies
27k
views
20 follow
C/C++ Libraries For Bioinformatics?
c c
updated 3.9 years ago by ▴ 50 • written 12.8 years ago by 13k
142
votes
14
replies
163k
views
16 follow
What Is The Sequencing 'Depth' ?
next-gen sequencing
updated 3.3 years ago by ★ 2.1k • written 13.0 years ago by 153k
142
votes
21
replies
29k
views
12 follow
Tutorial: A few words for R beginners
Swirl R
updated 10 months ago by 38k • written 8.3 years ago by ★ 1.6k
138
votes
21
replies
67k
views
18 follow
Database Of Tumor Suppressors And/Or Oncogenes
cancer gene database oncogene tumor
2.5 years ago by Malachi Griffith 19k
136
votes
25
replies
75k
views
14 follow
Tutorial: Piping With Samtools, Bwa And Bedtools
unix samtools bwa bedtools
updated 11 months ago by 38k • written 10.9 years ago by ★ 4.2k
136
votes
26
replies
23k
views
14 follow
Best Way For A Beginner To Get Up To Speed On Unix Quickly?
unix perl genomics
updated 4 weeks ago by 38k • written 11.2 years ago by ▴ 300
136
votes
41
replies
20k
views
20 follow
Forum: Are We Rude/Do We Expect Too Much From People Asking Questions On This Forum?
meta
updated 24 days ago by 38k • written 9.8 years ago by ★ 1.6k
136
votes
29
replies
6.4k
views
16 follow
How Do We Discourage Ad-Hoc Bioinformatic Analyses?
software
updated 10 months ago by 38k • written 12.2 years ago by 21k
134
votes
65
replies
3.5k
views
11 follow
Forum: Bioinformatics vs. the Climate Crisis
RNA-Seq Climate Forum
updated 13 months ago by 52k • written 3.3 years ago by ▴ 880
134
votes
13
replies
20k
views
Alignment and mapping
alignment next-gen mapping
updated 7.0 years ago by 8.3k • written 7.0 years ago by ▴ 700
131
votes
27
replies
40k
views
14 follow
Why Are There Many Rna-Seq Hits To Intronic Regions?
rna-seq
updated 11 months ago by 38k • written 10.9 years ago by 33k
131
votes
18
replies
154k
views
16 follow
Blast - Formatting Output
blast format output
updated 3 months ago by ▴ 20 • written 9.3 years ago by ▴ 310
131
votes
48
replies
14k
views
19 follow
Justifying Learning Linux For Bioinformatics
linux subjective
updated 11.6 years ago by ★ 2.6k • written 11.6 years ago by 11k
130
votes
122
replies
28k
views
23 follow
Tutorial: Survival analysis with gene expression
cox gene-expression survival-analysis geo
updated 11 days ago by 38k • written 4.4 years ago by 84k
130
votes
37
replies
12k
views
27 follow
What Are The Obsolete Research Topics In Bioinformatics?
updated 11.5 years ago by ★ 1.3k • written 11.6 years ago by ▴ 820
129
votes
32
replies
121k
views
29 follow
Is There A Free Alternative To Ingenuity Pathway Analysis?
network pathway
updated 11 months ago by 38k • written 12.0 years ago by ▴ 530
129
votes
38
replies
5.6k
views
21 follow
Forum: Who are the Greatest Bioinformaticians Of All Time (GBOAT)
bioinformatics Forum
updated 4.0 years ago by 34k • written 4.0 years ago by 96k
128
votes
83
replies
9.9k
views
8 follow
Tool: Lossless ALAPY Fastq Compressor (now for MacOS X with 10-20% improved speed and compression ratio)
fastq compressor lossless fastq compression Tool
5.7 years ago by Petr Ponomarenko ★ 2.7k
127
votes
33
replies
53k
views
19 follow
VCF files: Change Chromosome Notation
vcf next-gen sequence
updated 4 months ago by 38k • written 8.9 years ago by ▴ 480
126
votes
20
replies
49k
views
13 follow
How do I explain the difference between edgeR, LIMMA, DESeq etc. to experimental Biologist/non-bioinformatician
gene LIMMA edgeR
updated 3.3 years ago by ▴ 220 • written 5.3 years ago by ★ 1.8k
126
votes
44
replies
27k
views
16 follow
Forum: Trimming adapter sequences - is it necessary?
NGS adapter RNA-Seq
updated 11 days ago by 38k • written 6.5 years ago by ▴ 970
126
votes
24
replies
74k
views
18 follow
Sequence Length Distribution From A Fastq File
sequence length fastq
updated 3.9 years ago by • 0 • written 9.8 years ago by ▴ 360
124
votes
19
replies
171k
views
13 follow
What'S The Difference Between Cds And Orf?
cds orf
updated 22 months ago by • 0 • written 10.8 years ago by ▴ 350
124
votes
29
replies
6.2k
views
18 follow
What License Do You Use When You Release Code And Data?
general software subjective
updated 9.3 years ago by 20 • written 13.0 years ago by 7.4k
124
votes
46
replies
43k
views
20 follow
Forum: Visualization of ChIP-seq data using Heatmaps (Updated: 06/10/16)
ChIP-Seq visualization deeptools ngsplot homer Forum
updated 19 months ago by ★ 2.3k • written 7.0 years ago by ★ 3.2k
122
votes
17
replies
70k
views
8 follow
What Are Phased And Unphased Genotypes?
genotyping genome
updated 12 months ago by 38k • written 11.9 years ago by ▴ 370
122
votes
11
replies
157k
views
11 follow
How Can I Convert Bam To Sam?
next-gen sequencing bam sam conversion
updated 18 months ago by • 0 • written 12.7 years ago by 4.8k
122
votes
42
replies
8.7k
views
21 follow
News: Help Make Biostar Better! Add Your Feedback, Opinions And Suggestions.
meta biostars
updated 5 weeks ago by 38k • written 10.3 years ago by 96k
122
votes
19
replies
23k
views
9 follow
Could you explain the difference between STAR, KALLISTO, SALMON etc. to experimental Biologist/non-bioinformatician
RNA-Seq alignment next-gen R assembly
updated 23 months ago by 38k • written 3.5 years ago by ▴ 720
121
votes
44
replies
18k
views
21 follow
What Is Your Favorite Question To Ask When Interviewing Potential Bioinformaticians?
subjective
updated 5 weeks ago by 38k • written 12.8 years ago by 5.3k
120
votes
8
replies
77k
views
GRCh37/38(NCBI) vs hg19/hg38(UCSC)
ncbi ucsc grch38 hg38
updated 14 months ago by 38k • written 8.5 years ago by ▴ 520
119
votes
23
replies
28k
views
14 follow
Why are we still using Bam files? And not Cram, HDF5 or improved Bam files?
cram bam io hdf
updated 23 months ago by 38k • written 8.7 years ago by ▴ 320
118
votes
26
replies
32k
views
22 follow
Transcript to gene level count for DEseq(2) use- Salmon/Sailfish/Kallisto etc.
DESeq Kallisto RNASeq Salmon DESeq2
updated 10 days ago by ▴ 30 • written 7.8 years ago by ▴ 610
118
votes
31
replies
174k
views
17 follow
Correct Way To Parse A Fasta File In Python
fasta parsing python
updated 17 months ago by 126k • written 12.9 years ago by 11k
118
votes
53
replies
87k
views
22 follow
How to plot coverage and depth statistics of a bam file
bam coverage depth next-gen-sequencing
updated 2 days ago by • 0 • written 8.8 years ago by ▴ 330
118
votes
7
replies
105k
views
Bam And Indexed Bam Files
bam index
11.2 years ago by Sahel ▴ 260
118
votes
15
replies
101k
views
15 follow
Economics Of A Career In Bioinformatics
career
updated 12.2 years ago by • 0 • written 12.4 years ago by ▴ 210
117
votes
59
replies
29k
views
23 follow
Help a graduate student going into Bioinformatics looking for a new personal laptop. Should I get a Mac or a PC?
hardware next-gen
updated 6 weeks ago by 38k • written 7.9 years ago by ▴ 30
116
votes
66
replies
40k
views
20 follow
Tutorial: [Deprecated] Fast download of FASTQ files from the European Nucleotide Archive (ENA)
aspera fastq-dump Fastq ENA
updated 7 days ago by 38k • written 4.7 years ago by 70k
116
votes
74
replies
42k
views
40 follow
Is there a Lims that doesn't suck?
LIMS
updated 4 months ago by 126k • written 12.3 years ago by ★ 3.2k
116
votes
31
replies
35k
views
24 follow
Forum: Where To Look For Quality Bioinformatics Short Courses And Workshops?
Courses
updated 9 months ago by 38k • written 9.6 years ago by 11k
116
votes
25
replies
118k
views
12 follow
Where Can I Download Human Reference Genome In Fasta Format? Hgref.Fa File
human fasta sequence bwa
updated 6.1 years ago by ▴ 160 • written 12.7 years ago by 4.8k
116
votes
35
replies
7.0k
views
18 follow
Forum: Is Biostar Killing The Bioinformatics Core?
core biostars
updated 5 weeks ago by 38k • written 10.0 years ago by 21k
115
votes
29
replies
28k
views
11 follow
PCA in a RNA seq analysis
RNA-Seq pca
updated 4.3 years ago by 27k • written 5.4 years ago by ▴ 330
108,911 results • Page 2 of 2179
Recent Votes
Answer: How to implement this two-stage one-to-many workflow using WDL?
Answer: How to implement this two-stage one-to-many workflow using WDL?
Answer: How to implement this two-stage one-to-many workflow using WDL?
Creating workflows with snakemake and conda
Is There A Way To Run Fastqc On All The Fastq Files In The Different Directories With Just One Command?
Is There A Way To Run Fastqc On All The Fastq Files In The Different Directories With Just One Command?
Comment: samtools idxstats not removing ChrM
Recent Locations • All
France, just now
United States, just now
Glasgow, UK, 1 minute ago
United Kingdom, 2 minutes ago
Greenland, 3 minutes ago
Spain, 3 minutes ago
India, 3 minutes ago
Recent Awards • All
Scholar to GenoMax 126k
Popular Question to TJay • 0
Popular Question to predeus ★ 1.8k
Popular Question to eennadi ▴ 20
Commentator to shenwei356 7.9k
Scholar to Zhilong Jia ★ 2.1k
Scholar to LChart 2.1k
Recent Replies
Comment: gene filtering for agilent microarray using Limma by Di Wu • 0
Dear Prof. Kevin Blighe, many thanks for your quick reply. About the `correlation` value, I used the following code for getting the value. …
Comment: GATK GenotypeGVCFs explain by Pierre Lindenbaum 153k
https://gatk.broadinstitute.org/hc/en-us/articles/360035531852-Intervals-and-interval-lists
Comment: GATK GenotypeGVCFs explain by Sarah ▴ 30
thank you
Comment: GATK GenotypeGVCFs explain by raphael.B ▴ 270
It limits the operation to some genomic regions given as parameter
Comment: GATK GenotypeGVCFs explain by Sarah ▴ 30
what does the option L
Comment: GATK GenotypeGVCFs explain by Pierre Lindenbaum 153k
GenotypeGVCFs takes a set of GVCF files called with HaplotyperCaler and output a VCF file.
Answer: TCGA Methylation Data and Gene Mapping by Basti ★ 1.4k
CpGs may be annotated to more than >1 gene simply because gene regions overlap on the genome. If you want to associate each gene to a me…
Comment: Circos plot by Fabio Marroni ★ 3.0k
Please give a look to [this post][1] for increasing the probability to get an answer. If I may add some needed info: 1. What exactly do y…
Comment: Trying to install Roary with Conda results in error message by tobiwan ▴ 10
Wow, thank you so much for your explanation! My conda channel is indeed set to strict priority. Should packages with different dependencie…
Comment: FeatureCounts >edgeR > GO by Basti ★ 1.4k
You can use BioMart to convert your "gene-IDs" to gene symbols, but you need to specify from which database your gene identifiers come from
Comment: How to create GO Bar Plot using data obtained from DAVID Functional Enrichment A by Basti ★ 1.4k
If you search "DAVID dotplot" on this forum, you have many answers to your question. Note that you can also perform DAVID Functional Enrich…
Answer: How to implement this two-stage one-to-many workflow using WDL? by Pierre Lindenbaum 153k
nottested, something like: ``` version 1.0 workflow BIOSTAR { call FIRST { } scatter (F in FIRST.each_F)…
Answer: Databases to check variant pathogenicity by AtenaLia ▴ 20
You can try https://genebe.net , it is similar to Varsome though...
Answer: ACMG assignment tools by AtenaLia ▴ 20
Hi, free ACMG implementation without restrictions can be found at https://genebe.net . AFAIK there is also a free API coming.
Comment: Bad quality fastq files for analysis by Gene_MMP8 ▴ 220
I don't have the data available. I want to identify such datasets. The overall aim is to determine what factors influence fastq data qualit…
Traffic: 2418 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6