updated 23 months ago by
Raheleh
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written 7.7 years ago by
Kevin Blighe
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152
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70
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58k
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20 follow
152
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42
replies
187k
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22 follow
updated 3.2 years ago by
Ram
45k
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Obi Griffith
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151
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39
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30k
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Forum:
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Ram
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3.0k
150
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33
replies
80k
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19 follow
149
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35
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Tutorial:
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148
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18
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9 follow
148
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22
replies
86k
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updated 2.1 years ago by
Kevin Blighe
89k
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written 7.7 years ago by
Mike
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1.9k
147
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34
replies
59k
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17 follow
145
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56
replies
11k
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17 follow
updated 2.4 years ago by
Ram
45k
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written 12.3 years ago by
Istvan Albert
102k
145
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33
replies
34k
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updated 6.3 years ago by
chernouhov sergey
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50
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written 15.1 years ago by
User 59
13k
144
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14
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25k
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updated 4.3 years ago by
Jeremy Leipzig
23k
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written 14.7 years ago by
Casey Bergman
18k
144
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62
replies
15k
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23 follow
143
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14
replies
173k
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16 follow
updated 20 months ago by
Ram
45k
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written 15.3 years ago by
Pierre Lindenbaum
166k
142
votes
21
replies
32k
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12 follow
Tutorial:
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139
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25
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90k
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14 follow
138
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21
replies
75k
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18 follow
138
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25
replies
93k
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updated 12 months ago by
pl.terzian
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0
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written 12.2 years ago by
deepthithomaskannan
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420
138
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42
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24k
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22 follow
138
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27
replies
51k
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136
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26
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27k
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updated 2.4 years ago by
Ram
45k
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written 13.5 years ago by
Brett Thomas
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300
136
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29
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9.5k
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updated 3.2 years ago by
Ram
45k
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written 14.6 years ago by
Jeremy Leipzig
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136
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18
replies
180k
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updated 2.6 years ago by
katieostrouchov
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30
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written 11.6 years ago by
timjoncooper
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320
135
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125
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GenoMax
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written 6.8 years ago by
Kevin Blighe
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134
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65
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10k
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11 follow
updated 2.1 years ago by
Ram
45k
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990
134
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19
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13 follow
132
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44
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updated 13.9 years ago by
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130
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37
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7
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129
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31 follow
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38
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updated 2.1 years ago by
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128
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46
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57k
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128
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83
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19k
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126
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updated 6.7 years ago by
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written 7.7 years ago by
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updated 20 months ago by
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updated 21 months ago by
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31
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updated 20 months ago by
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GenoMax
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Attaching a screenshot for ready reference. Full size PDF linked above.
Posted as an issue to InferCNV already: https://github.com/broadin…
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> local SSDs are cheap and very fast
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Looks like you have already opened an issue on STAR repo: https://github.com/alexdobin/STAR/issues/2650
That was going to be the next sugg…
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How can I use bcftools +setGT to get genotypes without phase e.g. "|" or "/"?
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That is exactly what Snakemake is for.
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What others have said, but also
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I tried STAR counting with an index created without GTF. The results are identical to those based on index created with GTF. Every single c…
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You can get some data from GDC portal: https://portal.gdc.cancer.gov/analysis_page?app= and https://portal.gdc.cancer.gov/analysis_page?app…
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Can I get TCGA somatic mutation vcf files or maf files
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Done. Thank you.
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Far as I know TCGA did not do transcript level expression as a standard analysis (see the list here --> https://docs.gdc.cancer.gov/Data/Bi…
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https://www.biostars.org/u/45375/ : Please accept this answer (green check mark) to provide closure for this thread.
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