Limit : all time
all time today this week this month this year
121,523 results • Page 575 of 2431
Sort: Rank
Rank Views Votes Replies
1
vote
0
replies
792
views
Beagle 5.2 for imputation, outofmemory or 'bus error' any help?
Imputation Beagle
3.8 years ago by zillurbmb51 ▴ 10
1
vote
3
replies
1.5k
views
scRNAseq - infer type of single-cell chemistry from fastq
scRNA-seq single cell RNA-Seq
updated 3.8 years ago by • 0 • written 4.4 years ago by ★ 2.1k
2
votes
1
reply
767
views
how to get exon regions for this gene w/ build 19 coordinates
bed
updated 3.8 years ago by 152k • written 3.8 years ago by ▴ 890
0
votes
0
replies
640
views
Why there are samples with different platforms?
GEO sample platform assay dataset
updated 3.8 years ago by 45k • written 3.8 years ago by • 0
11
votes
15
replies
5.4k
views
Output of samtools view, what does the third column actually represent?
samtools
updated 3.8 years ago by 21k • written 3.8 years ago by ▴ 250
0
votes
2
replies
2.4k
views
How to fasterq-dump 10x genomics snATACseq fastq from SRA
fasterq-dump snATACseq scATACseq sra 10x
updated 3.8 years ago by 15k • written 3.8 years ago by • 0
2
votes
2
replies
4.1k
views
Merging columns from multiple files and adding headers- Linux
linux merge join
updated 3.8 years ago by ▴ 840 • written 3.8 years ago by • 0
0
votes
2
replies
975
views
Regarding p53 (tumour suppressor gene) mutation and overexpression relation with survival analysis
analysis survival
3.8 years ago by jyotsnap • 0
3
votes
3
replies
2.3k
views
Efficient way for Multiple Sample Mapping with STAR ?
star
3.8 years ago by rlatjsgns129 ▴ 20
3
votes
3
replies
1.0k
views
best tool for the pipeline wrapper
pipeline
updated 3.8 years ago by 102k • written 3.8 years ago by ▴ 280
0
votes
2
replies
1.0k
views
Benchmarking different DESeq2 design models
RNA-sequencing differential-gene-expression DESeq2 R
updated 3.8 years ago by 45k • written 3.8 years ago by ▴ 20
1
vote
1
reply
6.8k
views
Changing colour labels of samples with pheatmap
pheatmap
updated 3.8 years ago by ★ 3.1k • written 3.8 years ago by ▴ 40
0
votes
5
replies
4.3k
views
Dealing with P value inflation of SNPs identified by qqplot
pooled SNP inflation calling factor sequencing genomic
updated 3.8 years ago by ★ 3.0k • written 3.8 years ago by • 0
0
votes
2
replies
923
views
Forum: How do I use a small font size in questions and answers?
fonts
updated 3.8 years ago by 102k • written 3.8 years ago by • 0
2
votes
7
replies
3.2k
views
how to increase modules in WGCNA
modules R WGCNA
3.8 years ago by Maryam • 0
0
votes
0
replies
701
views
News: Population genomics using ancient DNA data
PopulationGenomics aDNA
3.8 years ago by Physalia-courses ★ 2.6k
0
votes
3
replies
1.1k
views
Alignment with inserts and keeping the indexing of ref seq intact
mapping alignment sequence-analysis multiple-sequence-alignment mutations
3.8 years ago by iamakhilverma • 0
3
votes
2
replies
2.0k
views
Volcano plot not centered at origin
R
updated 3.8 years ago by 45k • written 3.8 years ago by • 0
1
vote
0
replies
628
views
Rare Variant Association analyses
Association Variant Cases Rare Controls
3.8 years ago by ClkElf ▴ 50
0
votes
0
replies
628
views
Calculate the Pearson correlation and associated p value for multiple variables
Pearson correlation R
updated 3.8 years ago by 13k • written 3.8 years ago by • 0
0
votes
0
replies
574
views
Coverage drops in fastq alignment against custom Immunoglobulin reference
Alignment RNASeq Immunoglobulin
3.8 years ago by Gama313 ▴ 130
0
votes
0
replies
571
views
Calculate nSL
selection iHS SNP
3.8 years ago by Litier • 0
0
votes
1
reply
2.1k
views
when explained variation per PC is too low while running PCA with SNP data
variation PCA SNP
updated 3.8 years ago by 27k • written 3.8 years ago by ▴ 60
0
votes
1
reply
1.0k
views
Error: 'calculateQCMetrics' is defunct
scRNA-seq scater
updated 3.8 years ago by 88k • written 3.8 years ago by ▴ 30
0
votes
0
replies
638
views
calculate kappa (transition/transversion) for each tree branch
paml
3.8 years ago by qqq2395 • 0
0
votes
0
replies
720
views
Mapping digested synthetic oligos back to original sequences.
shortread digestion map
3.8 years ago by Parham ★ 1.6k
3
votes
6
replies
1.9k
views
What is the Rfam version on Biomart Ensembl?
Rfam version Biomart RNAcentral
3.8 years ago by p.l.rehorst • 0
0
votes
0
replies
492
views
Method of calculating DAF
snp
3.8 years ago by Litier • 0
0
votes
0
replies
636
views
Extracting coordinates of possibly H bonded solvent molecule using BioPython
Biopython python PDBParsing VMD
updated 2.4 years ago by 45k • written 3.8 years ago by • 0
2
votes
4
replies
1.8k
views
Bedfile format deeptools
Genome DNA Deeptools ChIP-seq
updated 3.8 years ago by 105k • written 3.8 years ago by ▴ 10
2
votes
1
reply
1.2k
views
Update SNP map
assembly update SNP map
updated 3.8 years ago by ▴ 940 • written 3.8 years ago by • 0
2
votes
6
replies
2.1k
views
How to construct circRNA-miRNA-mRNA network using cytoscape
circRNA-miRNA-mRNA-networking microarray-analysis
3.8 years ago by Babita Pruseth • 0
2
votes
4
replies
3.4k
views
List of human protein coding genes with given name (known function?)
RNA-Seq Annotation Human
updated 3.8 years ago by ★ 9.6k • written 5.9 years ago by ★ 2.7k
2
votes
3
replies
2.7k
views
Is it possible to do mummerplot with reference and query sequences that have many contigs?
alignment mummer mummerplot
updated 3.8 years ago by 8.8k • written 3.8 years ago by ▴ 10
0
votes
0
replies
702
views
GPL arguments in getGEO()
GEO GEOquery R
3.8 years ago by Jeffrey3555054 ▴ 20
8
votes
10
replies
4.0k
views
6 follow
Renaming files that contain different numbers using rename command-Linux
linux coding
updated 3.8 years ago by 22k • written 3.8 years ago by • 0
1
vote
1
reply
999
views
Human tissue expression dataset except GTEx
GTEx
updated 3.8 years ago by ▴ 80 • written 3.8 years ago by ★ 9.6k
0
votes
1
reply
826
views
Truncating alignments in a SAM/BAM file
Alignment SAM BAM
updated 3.8 years ago by 152k • written 3.8 years ago by • 0
0
votes
1
reply
855
views
Where is genotype calls in this dataset?
genotype snps
updated 3.8 years ago by ▴ 940 • written 3.8 years ago by • 0
3
votes
3
replies
1.3k
views
Pfam - get only one representative fasta sequence per family
pfam fasta protein
updated 3.8 years ago by ★ 29k • written 3.9 years ago by ▴ 80
0
votes
1
reply
1.2k
views
split pdb into submodels
pdb protein
updated 3.8 years ago by ★ 29k • written 3.8 years ago by ▴ 80
6
votes
8
replies
3.4k
views
Is it possible to detect of SNVs and InDels in low coverage WGS (5-10X) data?
mutation low WGS lcWGS pipeline somatic coverage calling
updated 3.8 years ago by 6.1k • written 3.8 years ago by ▴ 30
1
vote
1
reply
945
views
Data Storage in Plink Format
ID plink1.9 fam plink
updated 2.3 years ago by 45k • written 3.8 years ago by • 0
0
votes
0
replies
729
views
How to find out how many reads were used in contig assembly in metaSPADES?
metaspades
3.8 years ago by DNAngel ▴ 250
1
vote
1
reply
3.1k
views
How do you interpret Tukey's significance when there is no group clustering alone?
Tukey
3.8 years ago by DNAngel ▴ 250
1
vote
3
replies
1.6k
views
Can someone explain this Trinity/Chrysalis output warning?
Trinty de-novo RNAseq
updated 3.8 years ago by 8.8k • written 3.8 years ago by ▴ 30
0
votes
2
replies
1.4k
views
Interpreting read coverage over gene body plot
chipster rseqc illumina rna-seq
3.8 years ago by Mikael • 0
4
votes
4
replies
2.2k
views
Average Amino Acid Identity (AAI) analysis manually
awk parallel sed AAI BLAST
3.8 years ago by fec2 ▴ 50
2
votes
1
reply
1.1k
views
PACBIO alignment on IGV
Pacbio IGV insertions
updated 3.8 years ago by 102k • written 3.8 years ago by ▴ 170
0
votes
0
replies
737
views
Error in methyl kit (differential methylation analysis) in R
epeigenetics methylation differential analysis R methylkit DNA
3.8 years ago by harshraje19 ▴ 50
121,523 results • Page 575 of 2431
Recent Votes
Comment: PacBio amplicon reads partially aligned using minimap2 – library or analysis iss
Comment: PacBio amplicon reads partially aligned using minimap2 – library or analysis iss
Answer: NCBI Datasets CLI Question
SNP calling with SAMtools on multiple samples
Comment: Crac: Funny And/Or Weird Names For Bioinformatics Tools
Answer: Crac: Funny And/Or Weird Names For Bioinformatics Tools
Comment: Crac: Funny And/Or Weird Names For Bioinformatics Tools
Recent Locations • All
United States, 2 minutes ago
United States, 17 minutes ago
United States, 18 minutes ago
United States, 23 minutes ago
Atlanta, GA, USA, 33 minutes ago
United States, 35 minutes ago
United States, 38 minutes ago
Recent Awards • All
Popular Question to Bjorn • 0
Popular Question to heureuse ▴ 10
Teacher to Zev.Kronenberg 12k
Popular Question to matthew.tarnowski1 • 0
Popular Question to JAB ▴ 10
Popular Question to Pumla • 0
Popular Question to analyst ▴ 70
Recent Replies
Comment: PacBio amplicon reads partially aligned using minimap2 – library or analysis iss by louisflower1999 • 0
Hi GenoMax, Thanks so much for your suggestion! Those amplicons are around 4.4kb. And there should be at least 1kb from the left and 800 b…
Comment: NCBI Datasets CLI Question by GenoMax 152k
Wanted to make it a complete answer with an additional command. Moved now.
Comment: NCBI Datasets CLI Question by Mensur Dlakic ★ 29k
Maybe make this an answer rather than a comment?
Comment: PCA interpretation by swbarnes2 15k
You are trying to PCA these by what, exactly? Binned coverage? Is this really informative?
Answer: NCBI Datasets CLI Question by GenoMax 152k
I don't see a way to specify a random number of accessions to download as an option. Perhaps you may want to open an issue and suggest that…
Comment: PacBio amplicon reads partially aligned using minimap2 – library or analysis iss by Zev.Kronenberg 12k
@genomax has a good point about trying `pbaa`. The tool will output consensus sequences of the different alleles. You can then use MSA to a…
Answer: Joint Calling for Large Germline WGS Cohort by Jeremy Leipzig 23k
Not to get too pedantic but joint genotyping solves a different problem (removing artefactual variants) from producing a population VCF tha…
Answer: Joint Calling for Large Germline WGS Cohort by DBScan ▴ 490
Another option would be HAILs VDS Combiner, [https://hail.is/docs/0.2/vds/hail.vds.combiner.VariantDatasetCombiner.html#hail.vds.combiner.V…
Comment: how shoud the phred score be intepreted? by QX ▴ 70
thank you for explanation and documentation
Comment: how shoud the phred score be intepreted? by GenoMax 152k
Illumina sequencing assumes/generally expects that clusters in a sequencing field have an even distribution of ACTG so for every sequencing…
Comment: how shoud the phred score be intepreted? by QX ▴ 70
what do you mean by 'low nucleotide diversity'. If it is low nucleotide diversity, is it supposed to have consistent signals, leading to hi…
Answer: how shoud the phred score be intepreted? by GenoMax 152k
> Does the phred-score is affected by the position of the base in all the reads (vertical), or all the bases that belong to a single read (…
Answer: Joint Calling for Large Germline WGS Cohort by Pierre Lindenbaum 166k
try glnexus https://github.com/dnanexus-rnd/GLnexus/wiki/Getting-Started
Comment: Inherited pipeline uses RNA-seq variant calls for WASP filtering—shouldn’t it be by jonas.andersson ▴ 40
Thank you so much for you answer @iansudbery! Yes I have read it too and I don't think it's totally clear either, so I guess I might not be…
Answer: Inherited pipeline uses RNA-seq variant calls for WASP filtering—shouldn’t it be by i.sudbery 21k
Looking through the WASP documentation, and paper, its a little unclear. Clearly what is expected is a set of "known" SNPs. However, I'm no…
Traffic: 2883 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6