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121,515 results • Page
587 of 2431
Sort: Rank
Rank
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Votes
Replies
3
votes
2
replies
1.1k
views
How can I add KEGG functional categories to whole genome alignments?
alignment
annotation
technical
3.9 years ago by
Ssri
• 0
11
votes
21
replies
13k
views
6 follow
How to properly combine two bam files of a paired-end data
sequencing
Paired-end
updated 3.9 years ago by
zacchatt
• 0 • written 8.7 years ago by
izzy.yichao.cai
▴ 180
6
votes
17
replies
3.7k
views
How to trim a GFF3 file based on specific coordinates?
Annotations
GFF3
updated 3.9 years ago by
rpolicastro
13k • written 3.9 years ago by
VenGeno
▴ 100
1
vote
4
replies
2.3k
views
Estimating sequencing depth or mean reads per cell
sc-rna
updated 3.9 years ago by
ATpoint
88k • written 3.9 years ago by
Lekshmy
▴ 10
1
vote
5
replies
6.4k
views
6 follow
A problem with MEGA-X tool for select the columns of nucleotides and edit them
software error
alignment
sequence
gene
updated 3.9 years ago by
yfritsche
• 0 • written 6.7 years ago by
caombrat
▴ 10
0
votes
1
reply
1000
views
How can i get sequences from a big list of accession number from NCBI?
gene
NCBI
Biopython
updated 3.9 years ago by
GenoMax
152k • written 3.9 years ago by
Camp
• 0
0
votes
0
replies
602
views
How to search for species with certain function or pathway in the annotated genome?
database
genome
species
3.9 years ago by
kelsdeaton
• 0
4
votes
2
replies
3.8k
views
How to convert plink data from 38th assembly to 37
assembly
SNP
plink
liftOver
genome
updated 3.8 years ago by
wenbinm
▴ 40 • written 4.3 years ago by
eyb
▴ 270
0
votes
0
replies
571
views
assessing relative contribution of samples/ organs towards a diseases in multi-tissue RNAseq
RNAseq
3.9 years ago by
cwwong13
▴ 40
0
votes
0
replies
594
views
Power calculation for microarray data
statistical_power
microarray
3.9 years ago by
Gene_MMP8
▴ 240
0
votes
0
replies
844
views
KING struggle: Relatedness
king
relatedness
3.9 years ago by
German.M.Demidov
★ 3.0k
0
votes
4
replies
3.5k
views
How to colour points in cnetplot of clustprofiler?
clusterprofiler
cnetplot
R
updated 2.3 years ago by
mrmodenait
• 0 • written 3.9 years ago by
DN99
▴ 20
1
vote
3
replies
1.3k
views
extracting a gene from a gmt file
gmt
pathway
updated 2.6 years ago by
Ram
45k • written 3.9 years ago by
Bogdan
★ 1.4k
0
votes
5
replies
1.8k
views
how to calculate positive and negative for a given protein sequence
proteomics
updated 3.9 years ago by
Joe
22k • written 3.9 years ago by
Mo
▴ 920
0
votes
0
replies
367
views
a specific transcript sequence from transcriptome mapped RNA seq
RNA-seq
3.9 years ago by
zoro
• 0
0
votes
0
replies
1.5k
views
Job:
Post-doctoral Fellowship in Diabetes, Harvard Medical School
ChIP-seq
single-cell
postdoc
updated 2.3 years ago by
Ram
45k • written 3.9 years ago by
Sudha
• 0
0
votes
2
replies
1.1k
views
STAR Genome Indexing
sjdboverhang
index
star
updated 3.9 years ago by
ATpoint
88k • written 3.9 years ago by
a.gmal92
• 0
1
vote
4
replies
1.9k
views
is local ancestry inference typically always run w/ array genotypes instead of imputed genotypes?
ancestry
updated 3.9 years ago by
LauferVA
4.8k • written 3.9 years ago by
curious
▴ 890
2
votes
2
replies
1.3k
views
Center or fix a sample at 0 on PC1 in PCA plot
Bulk
RNA-Seq
PCA
updated 3.9 years ago by
fracarb8
★ 1.7k • written 3.9 years ago by
bioinf.questions
• 0
0
votes
0
replies
657
views
Introgression analyses
introgression
Dsuite
analyses
3.9 years ago by
gubrins
▴ 350
0
votes
0
replies
1.0k
views
Job:
Scientific Officer: Human genomics and translational data (ELIXIR/EMBL-EBI, Cambridge, UK)
human-genomics
updated 2.3 years ago by
Ram
45k • written 3.9 years ago by
Erin Haskell
▴ 470
0
votes
0
replies
988
views
Job:
Programme Manager: Human genomics and translational data (ELIXIR/EMBL-EBI, Cambridge, UK)
Cambridge
human
EBI
genomics
3.9 years ago by
Erin Haskell
▴ 470
0
votes
0
replies
763
views
Differential expression analysis of TCGA data based on tumor staging
analysis
DEG
TCGA
3.9 years ago by
txtbookir
▴ 30
1
vote
4
replies
1.7k
views
Extract reads used for contigs assembly
assembly
sequencing
RNA-Seq
updated 3.9 years ago by
cpad0112
21k • written 6.3 years ago by
Clet
• 0
0
votes
0
replies
925
views
Plotting PCA chart using biopython
python
matplotlib
biopython
updated 3.9 years ago by
Ram
45k • written 3.9 years ago by
ran
• 0
1
vote
4
replies
2.3k
views
How to retrieve KO IDs for a list of genes?
KEGG
database
updated 3.8 years ago by
Mark
★ 1.6k • written 3.9 years ago by
deep771992chanda
▴ 40
0
votes
0
replies
732
views
How to convert .mol files to cdx?
cdx
mol
chemdraw
updated 24 months ago by
Ram
45k • written 3.9 years ago by
itst
• 0
2
votes
4
replies
2.0k
views
What does .bim .bed .fam stands for?
plink
fam
bim
bed
updated 3.8 years ago by
Mark
★ 1.6k • written 3.9 years ago by
Nagy
• 0
3
votes
4
replies
1.6k
views
Chipseq visualization how to draw the figure
peaks
Chipseq
3.9 years ago by
Binghong
▴ 20
1
vote
0
replies
796
views
KEGG pathway draw
KEGG
transcriptome
RNAseq
3.9 years ago by
najibveto
▴ 130
1
vote
1
reply
1.1k
views
So many variants detected.
gatk4
variants
3.9 years ago by
Mehmet
▴ 820
0
votes
0
replies
672
views
How to generate feature Data(fData)
Cicero
scATAC-seq
3.9 years ago by
bill
• 0
4
votes
3
replies
2.9k
views
Creating a variation graph for Giraffe alignment from assemblies
vg
vgteam
updated 3.9 years ago by
Jouni Sirén
▴ 670 • written 3.9 years ago by
Michael
▴ 30
1
vote
2
replies
1.7k
views
Advice on organizing large GSVA heatmap
rnaseq
gsva
heatmap
3.9 years ago by
Morgan S.
▴ 90
5
votes
3
replies
1.6k
views
proportion of variance
variance
gene
SNP
updated 3.9 years ago by
LauferVA
4.8k • written 3.9 years ago by
khatami.mahshid
▴ 30
0
votes
0
replies
1.5k
views
Tutorial:
Alignment-free RNA-seq Differential Gene Expression Analysis with Kallisto & Sleuth
dge
kallisto
rnaseq
sleuth
3.9 years ago by
mo
• 0
0
votes
1
reply
1.0k
views
GSEA and over-representation analysis of many genes
GSEA
DE
ORA
RNAseq
updated 3.6 years ago by
bookorg
▴ 20 • written 3.9 years ago by
avelarbio46
▴ 30
1
vote
12
replies
5.4k
views
7 follow
Error when trying to import GTF files using rtracklayer's import function
annotation
rtracklayer
software error
3.9 years ago by
Marcel
• 0
1
vote
1
reply
2.7k
views
PYMOL: Output Polar Contacts Between Chains to Text File
PyMol
Python
updated 3.9 years ago by
Ram
45k • written 3.9 years ago by
berkyalcinkaya55
▴ 10
1
vote
0
replies
650
views
integrative multiomic data
analysis
multiomics
integrative
3.9 years ago by
rob.costa1234
▴ 310
0
votes
5
replies
1.6k
views
Inquiry related to vcf file and formatting
vcf
bcftools
updated 2.3 years ago by
Ram
45k • written 3.9 years ago by
rheab1230
▴ 140
0
votes
0
replies
627
views
Difference in alignment length between FASTA and HitTable
FASTA
BLAST
3.9 years ago by
Leah F
• 0
2
votes
2
replies
2.4k
views
Is subtelomeric region and pericentromeric region defined in human genome?
genome
human
pericentromeric
subtelomeric
updated 3.9 years ago by
Yoann Pageaud
• 0 • written 7.8 years ago by
Boboboe
▴ 40
2
votes
1
reply
767
views
blastpgp -b parameter?
blast
updated 3.9 years ago by
Mensur Dlakic
★ 29k • written 3.9 years ago by
Xylanaser
▴ 80
0
votes
3
replies
1.9k
views
Can someone explain the differences between various 1000 genome project and gnomad call sets? Also any straightforward PCA implementation on them?
wgs
updated 3.9 years ago by
Ram
45k • written 3.9 years ago by
rjd254
• 0
0
votes
0
replies
709
views
Job:
Data Stewardship Community Manager
Management
Data
Community
engagement
3.9 years ago by
Hannah
• 0
6
votes
4
replies
1.5k
views
News:
Upcoming online training courses
Python
R
3.9 years ago by
Physalia-courses
★ 2.6k
8
votes
11
replies
2.1k
views
6 follow
Forum:
Paper: Ten simple rules for biologists initiating a collaboration with computer scientists
article
opinion
updated 2.3 years ago by
Ram
45k • written 4.7 years ago by
JC
13k
0
votes
4
replies
1.7k
views
How to create a BED12 file defining UTR sequences
Sequences
UTRs
BED12
updated 3.9 years ago by
Carlo Yague
9.0k • written 3.9 years ago by
baldissera152
▴ 10
1
vote
2
replies
1.0k
views
PLINK ASSOC understanding the results
A1
A2
SNP
ASSOC
PLINK
3.9 years ago by
Michal Nevo
▴ 140
121,515 results • Page
587 of 2431
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152k
Only including this as an alternate option to try (if your reads at HiFi) : https://github.com/PacificBiosciences/pbAA > but both the 5′ a…
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To generate a covariate file, you can use your UK Biobank metadata files. These files contain information about the samples, including sex …
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Do you have any insights or ideas to take them into consideration?
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Hi there! Thanks for answering. Yes, I kept performing PCA after each removal, looking for new outliers. The result was a never-ending pr…
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Thanks, I will work on that more soon. Someone said that you could simply count CAG repeats on the genome browser of Nebula from certain …
Comment: UCSC genome browser negative strand positions
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Would this be related to some function that takes the "end" as the start for negative strand features? E.g. Exon1: chr1 100 500 E…
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