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121,831 results • Page 596 of 2437
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1
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2
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1.1k
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Pooling annotations from different databases in InterProScan
annotations interproscan protein sequence domain
4.1 years ago by Dunois ★ 2.9k
2
votes
2
replies
1.1k
views
What Galaxy tools add Ns to variable length FASTQ sequences to get uniform length? (FASTA if needed)
length galaxy fastq ngs
updated 4.1 years ago by 23k • written 4.1 years ago by ▴ 20
0
votes
10
replies
2.4k
views
DESeq2 analysis result differences
patch-seq RNA-Seq DESeq2 Dropouts
4.0 years ago by pkallurkar • 0
0
votes
2
replies
3.2k
views
Help with finding p value comparing 3 groups with different n
p-value
updated 4.1 years ago by ▴ 60 • written 4.1 years ago by • 0
0
votes
1
reply
1.1k
views
some values in assay are negative
deseq2
updated 4.1 years ago by 45k • written 4.1 years ago by • 0
0
votes
1
reply
1.8k
views
Problems with fragment length distribution output with Salmon
distribution Salmon RNA-Seq fragment length multiqc
updated 4.1 years ago by 4.2k • written 4.1 years ago by • 0
0
votes
2
replies
1.4k
views
Map Entire Directory of Paired-End Reads at Once
bwa bowtie genomics assembly reads
updated 4.1 years ago by 35k • written 4.1 years ago by ▴ 10
0
votes
2
replies
1.9k
views
rna-seq STAR early terminates with error message: std::out_of_range' / vector::_M_range_check when processing annotations GTF
bacteria STAR prokaryotes rna-seq
4.1 years ago by Constanza • 0
0
votes
2
replies
3.9k
views
Converting mouse Gene IDs to Human while keeping genes that don't convert
bioMart RNA-seq Bioconductor R
4.1 years ago by oludhe ▴ 90
0
votes
1
reply
744
views
Histone marks enrichment analysis
RNA-Seq
updated 4.1 years ago by ▴ 520 • written 4.1 years ago by ▴ 10
2
votes
1
reply
4.0k
views
MinION Data Examples (FAST5) Database
ONT FAST5 MinION DNA
updated 4.1 years ago by 153k • written 4.1 years ago by ▴ 200
0
votes
6
replies
4.3k
views
computematrix how to set certain TSS
deeptools
4.1 years ago by Binghong ▴ 20
0
votes
0
replies
869
views
Error in haploview data format
haploview
updated 4.1 years ago by 45k • written 4.1 years ago by • 0
5
votes
5
replies
2.5k
views
Integrated Dimension Reduction Plot for CD4/CD8 sorted Feedback
10x seurat immunology
updated 4.1 years ago by ▴ 280 • written 4.2 years ago by ▴ 40
1
vote
1
reply
1.4k
views
Corelate TCR data to clusters/GEX/CITEseq data
10x vdj tcr seurat
updated 4.1 years ago by ▴ 280 • written 4.2 years ago by ▴ 40
1
vote
1
reply
1.4k
views
Analyzing TCRseq Data
tcr TCRseq scRepetoire Immunarch
updated 4.1 years ago by ▴ 280 • written 4.5 years ago by ▴ 90
0
votes
0
replies
742
views
Job: PDRA in Computational Biophysics and Cancer Research, University of Manchester, UK
Structural-Genomics pH-dependence Cancer
updated 2.5 years ago by 45k • written 4.1 years ago by • 0
2
votes
1
reply
1.2k
views
Forum: Advise for a computational neophyte
education research thesis master topic
updated 4.1 years ago by 4.1k • written 4.1 years ago by • 0
0
votes
0
replies
841
views
Relative abundance of differentially abundant ASVs after DESeq2
DESeq2 ASV
updated 4.1 years ago by 45k • written 4.1 years ago by • 0
1
vote
9
replies
2.1k
views
microarray miRNA expression data analysis
microarray R
updated 4.1 years ago by 89k • written 4.1 years ago by ▴ 20
2
votes
3
replies
5.5k
views
Functional enrichment analysis of bacteria
GO enrichment DAVID bacteria clusterProfiler R
updated 4.1 years ago by ★ 2.6k • written 4.7 years ago by ▴ 110
3
votes
8
replies
5.2k
views
How to search dbSNP using a list of SNPs and retrieve Gene name (hgnc symbol if existing, otherwise just whatever is in there)
biomaRt R
updated 3.6 years ago by ▴ 70 • written 4.4 years ago by ▴ 10
0
votes
3
replies
1.3k
views
Antibody Matching Transcripts
GeneralIdentifiers isoforms Antibody ensembl HumanAtlasProtein
updated 4.1 years ago by ★ 2.4k • written 4.1 years ago by ▴ 50
11
votes
5
replies
2.7k
views
6 follow
Beginner level projects for bioinformatics.
data-science Python
updated 4.1 years ago by 45k • written 4.1 years ago by ▴ 80
26
votes
6
replies
7.1k
views
9 follow
Forum: Making a living with bioinformatics
career
updated 3.2 years ago by 45k • written 7.3 years ago by ▴ 150
2
votes
4
replies
5.1k
views
relevel the clusterProfiler object
clusterProfiler
4.1 years ago by grant.hovhannisyan ★ 2.6k
2
votes
12
replies
7.7k
views
How to get KEGG pathway names in KEGG enrichment analysis using clusterprofiler
annotation enrichment KEGG clusterprofiler RNA-Seq
updated 4.1 years ago by ★ 2.6k • written 5.4 years ago by ▴ 190
0
votes
0
replies
545
views
TCGA WXS positions covered
WXS TCGA coverage
4.1 years ago by s.cleary12 • 0
2
votes
7
replies
6.4k
views
clusterProfiler and enrichplot: visualising groupGO results with individual genes and their fold changes
clusterProfiler enrichplot
updated 4.1 years ago by ★ 2.6k • written 4.5 years ago by • 0
0
votes
2
replies
2.1k
views
GO enrichment analysis in R on Solanum lycopersicum proteomics dataset
R GeneOntology GO clusterprofiler UNIPROT
updated 4.1 years ago by ★ 2.6k • written 4.6 years ago by • 0
0
votes
1
reply
678
views
Why sometimes map all of the reads ONLY to the forward strand of the provided reference?
Targeted RNA-seq Rhapsody BD
updated 4.1 years ago by 153k • written 4.1 years ago by • 0
1
vote
3
replies
2.6k
views
GO and KEGG pathway analysis of lncRNA genes
GO lncRNA clusterProfiler KEGG pathway
updated 4.1 years ago by ★ 2.6k • written 4.6 years ago by ▴ 140
1
vote
1
reply
1.5k
views
clusterProfiler gene list retrieval
clusterProfiler GO KEGG Reactome ontology
updated 4.1 years ago by ★ 2.6k • written 4.8 years ago by ▴ 30
0
votes
1
reply
919
views
Determine where an interleaved FASTQ record starts
fastq
updated 4.1 years ago by 21k • written 4.1 years ago by ★ 4.5k
1
vote
3
replies
1.6k
views
How to compare alignments(SAM/BAM files) aligned to different references?
sam WGS NGS bam alignment
updated 4.1 years ago by ▴ 600 • written 4.1 years ago by ▴ 20
3
votes
4
replies
2.7k
views
Aligning 23andme to reference genome
alignment txt 23andme
4.1 years ago by Manuel • 0
0
votes
3
replies
4.0k
views
Forum: How to calculate LDDT score for protein structure ?
LDDT PBD
updated 3.8 years ago by • 0 • written 4.1 years ago by • 0
2
votes
5
replies
3.1k
views
Bioperl SeqIO.pm cannot be found
feelnc lncRNA bioperl
4.0 years ago by bart ▴ 50
0
votes
1
reply
2.6k
views
Creating Signature Matrix from SC-RNA Seq data for Deconvolution of Bulk Tissue
deconvolution rna-seq cibersort
updated 4.1 years ago by ▴ 250 • written 4.1 years ago by ▴ 10
1
vote
1
reply
1.2k
views
Normalizing 5' Nascent RNA-seq data to identify differentially expressed transcription start sites
Deseq2 vst rle transformation
updated 4.1 years ago by 89k • written 4.1 years ago by ▴ 10
2
votes
7
replies
2.3k
views
Allele-Specific analysis for human WGBS data
allele methylation WGBS allelespecific dna
4.1 years ago by Ankit ▴ 520
4
votes
3
replies
1.5k
views
somatic short variant calling from patients having autoimmune disease
somatic immunedisease gatk variant
4.1 years ago by Mehmet ▴ 820
4
votes
9
replies
2.3k
views
Merge files in Plink
Plink
updated 4.1 years ago by 11k • written 4.1 years ago by ▴ 10
2
votes
2
replies
2.1k
views
GEO submission when I have raw data in SRA
GEO SRA scRNA-seq NCBI data
updated 4.1 years ago by 9.0k • written 4.1 years ago by ▴ 90
0
votes
0
replies
516
views
How to get good mapping for miRNA-seq data by removing rRNA/tRNA
miRNA
4.1 years ago by Ss.sharifi2015 ▴ 20
3
votes
5
replies
5.0k
views
BUSCO installation and run
RNAseq
updated 4.1 years ago by 8.8k • written 4.1 years ago by ▴ 470
0
votes
0
replies
651
views
how to plot genetic struture of bacterial genes?
bacteria plot gene
updated 4.0 years ago by 45k • written 4.1 years ago by ▴ 110
0
votes
0
replies
692
views
Karyotyping variation by ethnicity
structural SV ethnicity variation karyotype
4.1 years ago by gnmcsbnfrmtcsclb ▴ 70
0
votes
2
replies
2.6k
views
Linux command to delete empty fastq.gz files
linux fastq gz
updated 4.1 years ago by 21k • written 4.1 years ago by • 0
0
votes
0
replies
1.0k
views
VCF to 23 and Me format and changing ensamble reference help needed for underestanding VCF
23andMe VCF
4.1 years ago by aliciabasilo.ab • 0
121,831 results • Page 596 of 2437
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Answer: CBioPortal: What does Mutation type: Targeted_Region means?
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Comment: Perform Hierarchical Clustering in R with ggdendro Visualization
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Comment: Parabricks : Number of GPUs requested (2) is more than number of GPUs (0) in the by Pierre Lindenbaum 166k
@genomax I'm using the 'GPU' queue of my cluster (SLURM). The very same config was used with another parabrick subtool and I got not probl…
Comment: Parabricks : Number of GPUs requested (2) is more than number of GPUs (0) in the by GenoMax 153k
Are you running this under a job scheduler? Is there a separate partition for the GPU's/are they accessible to the scheduler?
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thank you.
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Are the batches biological replicates?
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If you want to save time at the cost of having a lesser understanding of how bioinformatic programs work, you may study through the BioStar…
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I would recommend, in the following order:<br> 1) Go through Bioinformatics Algorithms, either as a video course or as a book, and do all e…
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For what is worth, in a previous project, I have done some tests on different hierarchical clustering methods for single cell RNAseq. I had…
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* Get some data - either your own or from a paper / GEO / ArrayExpress / SRA / TCGA / cBioPortal etc etc. * Look at the methods of papers…
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"ward.D2" -- top of the pops in terms of interpretatble clusters from gene expression data in my hands, the rest is...often crytpic.
Comment: High percentage of intronic/intergenic reads in RNA-seq by i.sudbery 22k
I'd expect to see more or less what they see in your reference. Somewhere between half and two thirds of reads mapping to exons. The low fr…
Comment: Perform Hierarchical Clustering in R with ggdendro Visualization by Bastien Hervé 6.4k
As the whole presentation relies on a distance matrix and elements aggregation by hierarchical clustering, it would be helpful to better un…
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> Read in data Add an example of what is in `data.csv`.
Comment: How to submit a bacterial (endosymbiont) ITS rDNA sequence to GenBank? by GenoMax 153k
That is unfortunate. Perhaps try one more time to see if you can reach a more considerate help desk person with this try. In dealings with …
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Yes, I tried asking support for help, but I received a rude response. I was too embarrassed to ask again.
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Were https://www.genewiz.com/ and/or Novogene https://www.novogene.com/ on your list already? Several university sequencing core labs may a…
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