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121,904 results • Page 635 of 2439
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6
votes
4
replies
2.8k
views
Unable to install EnhancedVolcano: non-zero exit status
Harfbuzz EnhancedVolcano R
updated 4.3 years ago by 89k • written 4.3 years ago by ▴ 90
1
vote
2
replies
1.2k
views
How can I format blastn output?
blast pairwise blastn alignment
updated 4.3 years ago by 153k • written 4.3 years ago by • 0
1
vote
4
replies
1.5k
views
PopGenome Not Reading In FASTA File
popgenome MKT selection R phylogenomics
4.3 years ago by Simone ▴ 10
0
votes
1
reply
1.8k
views
error in anvi'o tool
python software error genome R gene
updated 4.3 years ago by • 0 • written 4.5 years ago by ▴ 120
4
votes
1
reply
718
views
Does anyone know if there is an implementation of overlaping kmeans algorithm in R ?
r partitional-clustering kmeans
updated 4.3 years ago by ★ 30k • written 4.3 years ago by ▴ 140
0
votes
2
replies
1.4k
views
How to combine UMIs split across reads 1 and 2 into a single UMI for deduplication?
umitools umi
4.3 years ago by SethG • 0
0
votes
0
replies
884
views
Job: Bioinformatics Job Opening
genomics RNA
updated 4.2 years ago by 45k • written 4.3 years ago by ▴ 100
0
votes
0
replies
522
views
Job: senior bioinformatician, University of Cambridge (UK) - 3years contract
three_years_contract Senior_bioinformatician
4.3 years ago by davide.chiarugi ▴ 20
4
votes
5
replies
15k
views
Extract rows name in R
rows R
updated 4.3 years ago by 12k • written 4.3 years ago by ▴ 30
0
votes
1
reply
1.1k
views
How two merge two different interactome networks?
Network analysis Network merge
updated 4.3 years ago by ▴ 70 • written 4.5 years ago by • 0
1
vote
2
replies
1.2k
views
Download MuSiC RNAseq analysis program
devtools MuSiC RNAseq
4.3 years ago by - • 0
0
votes
0
replies
638
views
Job: Postdoctoral Associate - 121648
DHVI Duke Postdoc
updated 4.2 years ago by 45k • written 4.3 years ago by • 0
0
votes
0
replies
930
views
Artic protocol
variant-calling artic nanopre sars-cov-2 medaka
4.3 years ago by juanjo75es ▴ 130
2
votes
3
replies
2.0k
views
How to change my SNP Id format from chr1_847228_C_T to chr1_847228 in my .bim file.
Chromosome SNP position Plink unix rsid
updated 4.3 years ago by ★ 4.8k • written 4.3 years ago by ▴ 20
1
vote
3
replies
1.9k
views
PGS Catalog file does not have rsID
Catalog CAD PGS PRSice
updated 4.0 years ago by ★ 4.8k • written 4.3 years ago by ▴ 20
0
votes
0
replies
494
views
I see SNP in IGB but not in my .vcf file
mapping snp
updated 4.3 years ago by 45k • written 4.3 years ago by • 0
5
votes
2
replies
1.6k
views
Kallisto alignment method for single nuclei
Kallisto
updated 4.3 years ago by ★ 7.7k • written 4.3 years ago by ▴ 20
3
votes
8
replies
6.8k
views
Plink update name flag, setting column names
plink update-name
updated 4.3 years ago by 12k • written 4.4 years ago by ▴ 70
1
vote
1
reply
2.0k
views
How to trim adaptor sequences for NEBNext kit
fastq trimmomatic RNA-seq
updated 4.3 years ago by 153k • written 4.3 years ago by ▴ 10
0
votes
0
replies
885
views
Confused about sambamba syntax for unmapped and mapped
sambamba
4.3 years ago by DNAngel ▴ 260
1
vote
0
replies
530
views
Finding Variants Unique to a Subset of Samples in a Multi-Sample VCF File
Data VCF Filtering
updated 4.2 years ago by 45k • written 4.3 years ago by ▴ 10
6
votes
10
replies
3.5k
views
Gaps in alignment
NGS mem bwa alignment
4.3 years ago by mikegrootde ▴ 20
3
votes
5
replies
1.6k
views
Identifying introns
RNA-Seq
updated 4.3 years ago by 45k • written 4.3 years ago by ▴ 70
0
votes
0
replies
430
views
Binding site mutation
RDRP NSP12
4.3 years ago by Mohamed Elsherbieny • 0
0
votes
1
reply
1.3k
views
GDC Client 500 Server Error
TCGA GDC error GDC-client server
updated 4.3 years ago by 89k • written 4.3 years ago by ▴ 10
0
votes
4
replies
1.9k
views
Make doesn't work for Allpaths LG
allpaths error make lg
4.3 years ago by cybercat • 0
6
votes
6
replies
8.6k
views
6 follow
ClusterProfiler-cnetplot output to Cytoscape?
pathway clusterprofiler
updated 4.2 years ago by • 0 • written 8.9 years ago by ▴ 10
0
votes
0
replies
726
views
Different no of 'unknown/class u' transcripts in merged.gtf and final.gtf files
Cufflinks StringTie GffCompare RNA-Seq
4.3 years ago by SKY ▴ 60
0
votes
1
reply
9.1k
views
Difference between "Original tree" and "Bootstrap consensus tree" in Mega X software for phylogeny
Mega Phylogeny
updated 4.3 years ago by • 0 • written 4.8 years ago by ★ 1.4k
3
votes
3
replies
3.2k
views
How to connect HLA alleles with rsID?
rsid
updated 4.3 years ago by • 0 • written 4.4 years ago by ▴ 380
4
votes
5
replies
2.9k
views
Command to parse mummer coords file
mummer nucmer
updated 4.3 years ago by ▴ 20 • written 5.9 years ago by ▴ 80
0
votes
7
replies
3.2k
views
Malformed BED entry at line 5. Start Coordinate detected that is < 0. Exiting.
unibind BED
updated 4.3 years ago by 21k • written 4.3 years ago by • 0
5
votes
7
replies
4.7k
views
Converting LogCPM to raw counts for DESEQ2
rna-seq
updated 19 months ago by ★ 8.3k • written 4.3 years ago by ▴ 70
0
votes
0
replies
555
views
Realign previous alignments
mafft alignment
4.3 years ago by QLFblaireau ▴ 30
1
vote
8
replies
1.9k
views
Unexpected blastx results
blast blastx
3.8 years ago by langziv ▴ 70
1
vote
1
reply
1.4k
views
Filtering out relevant Gene-fusions
Gene fusion filtering
updated 4.3 years ago by 5.9k • written 4.3 years ago by ▴ 30
0
votes
0
replies
1.1k
views
Hi-C merged files
Hi-C .hic
4.3 years ago by Oleczkaff • 0
1
vote
15
replies
5.4k
views
bcftools filter by protein prediction
bcftools
updated 4.3 years ago by ▴ 480 • written 4.3 years ago by ▴ 30
19
votes
6
replies
18k
views
6 follow
How to trim Nanopore reads. Please suggest a tool.
Nanopore MinIONQC ONT
updated 4.3 years ago by 48k • written 5.7 years ago by ▴ 80
0
votes
1
reply
715
views
Screening for high-impact mutations from WES-based variant calling and annotation
Variant screening
updated 4.3 years ago by 166k • written 4.3 years ago by ▴ 30
3
votes
6
replies
2.4k
views
genome assembly - size of gaps
PBJelly assembly_genome linked_reads gaps
updated 4.3 years ago by 15k • written 4.3 years ago by ▴ 20
0
votes
7
replies
2.1k
views
Counting reads with feature counts.
Genomics
4.3 years ago by aranyak111 • 0
1
vote
4
replies
1.3k
views
common coordinates from 10 files
coordinates common
4.3 years ago by K ▴ 10
0
votes
2
replies
1.7k
views
readFilesCommand not working
readFilesCommand rnaseq STAR
4.3 years ago by vinishavvenugopal ▴ 30
0
votes
1
reply
840
views
How to calculate Oncotype score and Mammaprint score from an RNAseq
Manmaprint Oncotype
updated 4.3 years ago by 45k • written 4.3 years ago by • 0
1
vote
4
replies
2.8k
views
Gene expression RNASeq
DESEQ2 RNAseq
updated 4.3 years ago by ★ 3.1k • written 4.3 years ago by ▴ 30
3
votes
7
replies
2.4k
views
Clarification regarding VCF fields (file format)
mutation VCF SNPs format
updated 4.3 years ago by ▴ 160 • written 4.3 years ago by 7.6k
4
votes
3
replies
2.3k
views
Job: Senior Bioinformatics Scientist
Senior-Scientist Geltor
updated 4.2 years ago by 45k • written 4.3 years ago by ▴ 10
0
votes
4
replies
3.6k
views
Convert MSTRG gene IDs to real one?
Gene MSTRG Stringtie
updated 4.3 years ago by 15k • written 4.3 years ago by • 0
2
votes
2
replies
1.1k
views
Does spades/metaspades normally having missing nodes?
metaspades spades
4.3 years ago by DNAngel ▴ 260
121,904 results • Page 635 of 2439
Recent Votes
Answer: Tried building a compact sequence format with 4-bit storage
Tried building a compact sequence format with 4-bit storage
Shift in RNA 3' position, Term-Seq vs RNASeq
Comment: STARlong for pacbio Isoseq reads
Comment: Automatically annotating a feature using a genbank file
Answer: Is this PCA plot correct??
Answer: Is this PCA plot correct??
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Recent Replies
Comment: Is total miRNA in EV constant? Implications for library size normalization. by Gordon Smyth ★ 8.3k
RNA-seq is very good at relative analyes. It would be straightforward to determine which miRNAs are relatively more abundant, compared to o…
Comment: Tried building a compact sequence format with 4-bit storage by Pranava ▴ 10
Woah!!! Thank you very much, Matthias. I honestly didn't even know some of those existed and I will definitely go through them and try to u…
Answer: Tried building a compact sequence format with 4-bit storage by Matthias Zepper 5.1k
Hello Pranava, Thanks for sharing your repository. Devising a new file format is an interesting undertaking and certainly a task with many…
Answer: Gene Ontology Enrichment with LOC gene IDs in Common Carp (Cyprinus carpio) by GenoMax 153k
`LOC` gene ID's are often assigned to uncharacterized genes and you may not get useful information from databases for them, thus they will …
Comment: Whole Genome Sequencing IG regions by GenoMax 153k
> are the calls I am seeing reliable or should I take them with something of a pinch of salt? Not sure what calls you are referring to but…
Comment: RNA-SEQ where only a subset of genes is of interest by piffelpaff • 0
Sorry to revive this ancient thread but I'm currently discussing the same question with some people in my lab and would love to somebody po…
Answer: STARlong for pacbio Isoseq reads by YuZJ • 0
Hello, you may try deSALT (DOI: 10.1186/s13059-019-1895-9, GitHub: ydLiu-HIT/deSALT) or uLTRA (DOI: 10.1093/bioinformatics/btab540, GitHub:…
Comment: Shift in RNA 3' position, Term-Seq vs RNASeq by acvill ▴ 350
Without knowing the details of the Term-seq method, could the 38 nt shift be accounted for by the difference in the position of the ribosom…
Comment: STARlong for pacbio Isoseq reads by Buffo ★ 2.4k
Thanks, I'll give it a try.
Comment: STARlong for pacbio Isoseq reads by GenoMax 153k
You could give `mapPacBio.sh` from BBMap suite a try while you wait for other answers. That works for reads up to 6 kb. BBMap has a new hom…
Comment: STARlong for pacbio Isoseq reads by Buffo ★ 2.4k
The average is 1.8kb. I was planning to post it on GitHub, but it seems like the repository has been unattended for the last months, so I d…
Comment: Getting just fastqc.zip file? by GenoMax 153k
Yes, You can either use it on command line or use the graphical user interface.
Comment: STARlong for pacbio Isoseq reads by GenoMax 153k
What is the average length of your reads? That error sounds like a bug, so you may want to post that on `STAR` repo as an issue. I assume …
Comment: Getting just fastqc.zip file? by pourhangleila95 • 0
I want to perform fastQC on my data.Do you use fastQC software for doing it?
Comment: Whole Genome Sequencing IG regions by 719 • 0
Sorry for the poor wording of the original post, also should say I really appreciate people taking a moment to look at my post. My main con…
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