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122,202 results • Page
673 of 2445
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Views
Votes
Replies
5
votes
5
replies
4.6k
views
how to run linux code in python
shell
python
sh
bash
linux
4.6 years ago by
szp770
▴ 10
0
votes
0
replies
948
views
Job:
Staff Scientist and Postdoc in Bioinformatics and Genomics @UMN
genomics
RNA-seq
postdoc
updated 2.7 years ago by
Ram
45k • written 4.6 years ago by
cauyrd
▴ 20
0
votes
0
replies
768
views
Wheat Input IDs for STRING database
PPI
Wheat
STRING
input_ID
4.6 years ago by
drishtee_barua
• 0
1
vote
1
reply
1.6k
views
Colour in heatmap labels
labels
colour
heatmap
updated 4.6 years ago by
seidel
11k • written 4.6 years ago by
kbaitsi
• 0
0
votes
0
replies
706
views
Catalog Database to TF binding site
TFBS
4.6 years ago by
Shicheng Guo
★ 9.6k
4
votes
3
replies
3.4k
views
R script does not work in snakemake
Snakemake
R
4.6 years ago by
lmlukoseviciute
▴ 60
0
votes
4
replies
1.4k
views
identification of catabolic genes in soil metagenome shotgun data
shotgun
metagenome
updated 4.6 years ago by
andres.firrincieli
3.9k • written 4.6 years ago by
mewgia
• 0
0
votes
4
replies
3.1k
views
How to compute exact P-values for a small data set for Kendall Correlation Matrix and implement it in the corr plot?
Corr
Biostatistics
Statistics
R
updated 4.6 years ago by
Ram
45k • written 4.6 years ago by
jansha.1997
• 0
2
votes
2
replies
1.4k
views
Custom Database in Kraken2: how are plasmids in same fasta file as bacterial genome handled?
Kraken2
plasmid
CustomDB
4.6 years ago by
Raphaela
▴ 10
2
votes
4
replies
1.2k
views
How an element is accessed in a python list
Python
updated 4.4 years ago by
Ram
45k • written 4.6 years ago by
nadarajan_v
• 0
0
votes
2
replies
1.3k
views
why do the header of bwa mapping sam files show [M::main_mem]
shell
bwa
genome
chip
mapping
4.6 years ago by
szp770
▴ 10
0
votes
1
reply
1.1k
views
vcf2maf produces large file after merge
vcf2maf
updated 4.6 years ago by
4galaxy77
2.9k • written 4.6 years ago by
lz1903
▴ 10
1
vote
2
replies
1.6k
views
KEGG orthology of microbiome
microbiome
KO
4.6 years ago by
mrashad
▴ 80
2
votes
2
replies
1.8k
views
Quick code question in TPM conversion from raw counts RNAseq
RNAseq
tpm
R
4.6 years ago by
v.johnson
▴ 30
1
vote
4
replies
1.9k
views
Coordinates long non-coding RNAs
gtf
python
bedtools
rna-seq
hg38
4.6 years ago by
luffy
▴ 130
1
vote
2
replies
1.4k
views
Adding new samples to single cell rna-seq analysis
batch
scRNA-seq
seurat
4.6 years ago by
maria2019
▴ 250
2
votes
1
reply
2.2k
views
Samtools reheader Numerical result out of range
samtools
header
bam
4.6 years ago by
Medhat
9.8k
0
votes
0
replies
823
views
Tajima-Nei Distance estimate with BioPerl
DNA
Perl
BioPerl
Tajima-Nei_Distance
4.6 years ago by
mauricio.1313
• 0
1
vote
2
replies
11k
views
how to subset Seurat object by gene names
Seurat
scRNA
4.6 years ago by
leranwangcs
▴ 150
0
votes
1
reply
1.0k
views
Cluster split, Galaxy Aus
galaxy
galaxyaus
clustersplit
updated 2.7 years ago by
Ram
45k • written 4.6 years ago by
vcquiroz
• 0
1
vote
4
replies
2.0k
views
Downloading viral database
database
Virus
NCBI
updated 4.6 years ago by
GenoMax
154k • written 4.6 years ago by
adnan.lahuf
• 0
0
votes
5
replies
1.7k
views
6 follow
Exome Sequencing Data?
fastq
Exome
database
updated 4.6 years ago by
ellimilial
▴ 20 • written 4.6 years ago by
Daniela Paula
• 0
1
vote
2
replies
3.0k
views
SNP coordinates to rsID in .bim file
rsID
snp
plink
plink1.9
updated 4.6 years ago by
Alex Reynolds
36k • written 4.6 years ago by
salman_96
▴ 70
0
votes
0
replies
793
views
getting residuals from dream
dream
limma
residuals
4.6 years ago by
RNAseqer
▴ 300
2
votes
4
replies
2.8k
views
GATK GenomicsDBImport does not support GVCFs with MNPs
GATK
MNPs
Mutect2
GenomicsDBImport
4.6 years ago by
Rodolfo Adrián
• 0
0
votes
3
replies
1.2k
views
Using cBioPortal to assess gene expression data?
cBioPortal
4.6 years ago by
a.basitkhan1990
▴ 60
0
votes
1
reply
951
views
Non-european ancestry in eQTL analysis
gwas
eqtl
updated 4.6 years ago by
sim.j.baum
▴ 170 • written 4.6 years ago by
Colari19
▴ 90
3
votes
1
reply
1.1k
views
Forum:
Interested in benchmarks? Please take our survey!
benchmarking
4.6 years ago by
Jeremy Leipzig
23k
0
votes
0
replies
910
views
struggle to plot metagene profile with bed files
plot
profile
metagene
4.6 years ago by
Lila M
★ 1.3k
5
votes
4
replies
2.2k
views
Meaning of the column of sam file
reads
position
sam
updated 4.6 years ago by
Pierre Lindenbaum
166k • written 4.6 years ago by
Jimpix
▴ 10
1
vote
3
replies
4.9k
views
How to deal with the error for "Per Sequence GC Content" in FastQC tool?
sequencing
sequence
genome
fastqc
next-gen
updated 4.6 years ago by
GenoMax
154k • written 5.6 years ago by
Researcher
▴ 20
1
vote
2
replies
1.2k
views
STAR index issues to the step 4
pipeline
snakemake
STAR
mapping
4.6 years ago by
aka
▴ 10
0
votes
1
reply
807
views
Output SNP data after imputation
genomic
genomics
snps
snp
imputation
updated 4.6 years ago by
4galaxy77
2.9k • written 4.6 years ago by
nbrad
• 0
0
votes
3
replies
3.5k
views
How to change headers of fasta files with the help of another file (nucl_wgs.accession2taxid.gz) containing the desired names (taxID_ accession.vers…
wgs
GenBank
fasta
bash
Taxonomy
updated 4.6 years ago by
shenwei356
8.7k • written 4.6 years ago by
Sebastian
• 0
13
votes
3
replies
5.9k
views
samtools/bcftools mpileup -B option: to use it or not in order to reduce the occurence of false SNPs discovery?
covid-19
mpileup
bcftools
snp
samtools
4.6 years ago by
cg1440
▴ 60
0
votes
0
replies
991
views
How to add annotation information to a plant genome in the treatment of single-cell ATAC with Signac?
annotation
Signac
plant
4.6 years ago by
qzLi0031
• 0
0
votes
1
reply
770
views
How to call small SVs (<50bp) from single end reads?
SNPs
single-end-reads
SVs
updated 4.6 years ago by
lieven.sterck
16k • written 4.6 years ago by
jseg
• 0
4
votes
2
replies
2.3k
views
fastp results, per base content
fastp
quality
perbasecontent
ubuntu
updated 4.6 years ago by
GenoMax
154k • written 4.6 years ago by
minifoog
▴ 10
0
votes
1
reply
942
views
Each run generate different result
BSMAP
WGBS
updated 4.6 years ago by
lieven.sterck
16k • written 4.6 years ago by
huangbin
• 0
2
votes
2
replies
1.2k
views
reformat.srun won't work
BBMAP
fastq
reformat.srun
cellranger
updated 4.6 years ago by
GenoMax
154k • written 4.6 years ago by
gonzalezb549
• 0
1
vote
7
replies
4.3k
views
ARS-UCD, UMD and Btau reference SNP map files
Cattle
rs
position
chromosome
3.9 years ago by
PKW
▴ 110
0
votes
1
reply
1.9k
views
MAST differential expression with batch information
scrnaseq
single-cell
MAST
seurat
batch-effect
updated 4.6 years ago by
ATpoint
90k • written 4.6 years ago by
Rahul Tyagi
▴ 10
11
votes
7
replies
3.8k
views
Inconsistency between alignment rates of BWA-mem and bowtie2
Bowtie
NGS
BWA
updated 4.6 years ago by
Istvan Albert
103k • written 4.6 years ago by
jesvinjoy35
• 0
0
votes
1
reply
1.9k
views
Maxbin2 usage for paired end reads
binning
paired-end-reads
updated 4.4 years ago by
serene.s
• 0 • written 4.6 years ago by
v.berriosfarias
▴ 140
8
votes
3
replies
2.5k
views
BioMart servers down again...
ensembl
biomart
4.6 years ago by
Tai
▴ 10
2
votes
4
replies
1.3k
views
BLAST output
blast
updated 4.6 years ago by
GenoMax
154k • written 4.6 years ago by
torquato.f.o
• 0
2
votes
1
reply
872
views
How to extract this information
gtf
r
rna
seq
galaxy
updated 4.6 years ago by
seidel
11k • written 4.6 years ago by
Lauren
• 0
17
votes
21
replies
21k
views
7 follow
plotting a dotplot with topGO output
RNA-Seq
GO
topGO
dotplot
clusterProfiler
updated 3.8 years ago by
svlachavas
▴ 790 • written 5.1 years ago by
rachid.boumlik
▴ 50
1
vote
8
replies
2.3k
views
weird characters in GATK vcf tables
genomics
updated 4.4 years ago by
Ram
45k • written 4.6 years ago by
ziv_attia
• 0
1
vote
1
reply
1.9k
views
Annotate vcf with AF, gene symbol, functional information
vcf
gnomad
snpeff
dbsnp
updated 4.6 years ago by
brunobsouzaa
▴ 840 • written 4.6 years ago by
bsmith030465
▴ 250
122,202 results • Page
673 of 2445
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Comment: Visualize methylation status in Pacbio Hifi read
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(as the JBrowse dev) I'm glad to hear this. if you see any trouble with it feel free to let me know, I have tried to keep up to date with m…
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Got it! I will try to switch their name and re-run the cellranger arc. Thank you very much, @arup !
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The barcode files with 24nt read length W71_LUNGrep2_S6_L001_R3_001.fastq.gz and W71_LUNGrep2_S6_L002_R3_001.fastq.gz should be the R2.
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I don't believe merqury ignores softmasked (lower case) nucleotides so I don't think that is the case. From what it sounds like, during th…
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Thanks a lot to be helpful I’m trying to build a complete `UniProtID` to `GeneSymbol` lookup table and I’m running into a wall. I’ve alrea…
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thanks for the quick reply. i posted the screenshot. gatk-internally, there is still the difference using -ERC or not, priot is getting …
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here the igv view. showing the histogram for all samples plus the reads for one: ![enter image description here][1] and expanded view of …
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3.5k
Check the read lengths to make sure the files are correct.
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By sequence. Thank you for your response!
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Thank you for your reply! Unfortunately, despite running YAHS with `--no-contig-ec`, the QV value of the resulting FASTA file did not impro…
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Hi Kevin, Thanks for the detailed explanation. Due to the characteristics of the datasets, we initially used very lenient quality control…
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Thank you very much Kevin, it worked!
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