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121,903 results • Page 673 of 2439
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3.7k
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Error in FUN(left, right) : non-numeric argument to binary operator in RStudio
rstudio
updated 4.4 years ago by 89k • written 4.4 years ago by • 0
0
votes
0
replies
744
views
How do I quickly run through all possible merger outputs?
unix emboss merger
4.4 years ago by lzbenicmi • 0
3
votes
3
replies
4.2k
views
Deeptools, ComputeMatrix and plotProfile
plotprofile ComputeMatrix deeptools Average
updated 4.4 years ago by • 0 • written 4.4 years ago by ▴ 20
2
votes
1
reply
637
views
How to merge SRRs from 1 sample
analysis NGS
updated 4.4 years ago by 153k • written 4.4 years ago by • 0
1
vote
2
replies
2.2k
views
Where to install latest Affymetrix Power Tools?
affymetrix
updated 4.4 years ago by 153k • written 4.4 years ago by ▴ 60
2
votes
9
replies
25k
views
7 follow
HISAT error: Encountered internal HISAT2 exception (#1)
RNA-Seq
updated 4.4 years ago by • 0 • written 8.3 years ago by ★ 1.5k
0
votes
0
replies
845
views
STAR - stringtie procedure
rnaseq AS stringtie splicing STAR
4.4 years ago by Hojn ▴ 30
1
vote
2
replies
839
views
Sources of gene expression levels in different tissue types
expression
updated 4.4 years ago by 153k • written 4.4 years ago by • 0
3
votes
3
replies
3.6k
views
Do I need to download any specific adapters for Illumina small RNA sequencing kit?
Adapter trimming small RNA trimmomatic cutadapt
updated 4.4 years ago by 153k • written 8.5 years ago by ▴ 370
4
votes
3
replies
2.6k
views
Deseq2 time interaction term
deseq2 rna-seq DE R
updated 3.2 years ago by ★ 1.3k • written 4.4 years ago by ▴ 30
1
vote
1
reply
1.4k
views
calculate area under curve for profile plot (deepTools)
plotProlfile deepTools
updated 4.4 years ago by 105k • written 4.4 years ago by ▴ 20
1
vote
8
replies
3.2k
views
Prinseq lite data preprocessing
Prinseq-lite RNA-seq
updated 2.5 years ago by 45k • written 4.7 years ago by ▴ 60
1
vote
10
replies
2.7k
views
big loss after markduplication
MarkDuplicates Re-sequencing Picard
updated 4.4 years ago by ▴ 170 • written 4.4 years ago by ▴ 300
0
votes
13
replies
7.6k
views
Trimmomatic-0.36 not finding adapter directory
Directory Trimmomatic ILLUMINACLIP
updated 4.4 years ago by 153k • written 4.4 years ago by • 0
4
votes
4
replies
1.8k
views
How comes scRNAseq linear batch corrected data looks worst than before correction?
rescalebatches regressbatches singlecell batch
updated 4.4 years ago by ★ 19k • written 4.4 years ago by ▴ 10
0
votes
2
replies
1.9k
views
No annotation peaks when running homer
homer peaks tss
4.4 years ago by Lila M ★ 1.3k
1
vote
0
replies
981
views
Parallel haplotyping
gVCF GATK HaplotypeCaller merge parallel
4.4 years ago by Poshi ▴ 10
0
votes
0
replies
745
views
How to map human variant to correspoding knock-allele in mouse
HMDC mouse MGI functional_assay knock-in
4.4 years ago by Damianos P. Melidis ▴ 60
0
votes
2
replies
1.6k
views
How to include the metadata when we build the txDb object?
txdb r
4.4 years ago by qwesxadzc9 • 0
1
vote
2
replies
886
views
question when using topgo
terms go incomplete
updated 4.4 years ago by 89k • written 4.4 years ago by • 0
2
votes
1
reply
895
views
Convert genotypes format '12' to ACTG format
r dplyr
updated 4.4 years ago by 21k • written 4.4 years ago by ▴ 20
1
vote
3
replies
1.4k
views
How to get GO terms to specific to perticular biological process
GO Enrichment RNA-seq
updated 4.4 years ago by ▴ 140 • written 4.4 years ago by ▴ 10
1
vote
15
replies
4.9k
views
How to perform multiple alignment using MAFFT?
genome alignment gene sequence
4.4 years ago by anikcropscience ▴ 270
1
vote
3
replies
1.4k
views
How to obtain FDR across all regions investigated in DiffBind
DiffBind
updated 4.4 years ago by ★ 2.1k • written 4.4 years ago by ▴ 10
0
votes
0
replies
788
views
News: Online Training - Conservation Genomics
Genome Genomics ConservationGenomics SNPs
4.3 years ago by Physalia-courses ★ 2.6k
2
votes
1
reply
1.6k
views
Convert GFF3 to splice junction BED file, for filtering variants multi-sample (RNA-seq) VCF
rna splice-junction vcf
4.4 years ago by William ★ 5.4k
0
votes
3
replies
1.5k
views
How to find single copy family from InParanoid output
InParanoid single copy
updated 4.4 years ago by ★ 2.9k • written 4.4 years ago by ▴ 20
0
votes
0
replies
1.6k
views
No peaks found in Signac's FindMarker
seurat atac-seq Signac atac singlecell
4.4 years ago by ahmad mousavi ▴ 800
6
votes
4
replies
1.6k
views
Concatenating fasta files based on prefix ?
aligment RNA DNA fasta
updated 4.4 years ago by 11k • written 4.4 years ago by ▴ 1000
15
votes
10
replies
4.4k
views
How to convert Transcripts ID of rhesus monkey to Transcripts ID of homo sapiens
transcript rna-seq
updated 4.4 years ago by ▴ 100 • written 4.4 years ago by • 0
0
votes
2
replies
1000
views
Database/list of disease complications
complications database disease
updated 4.4 years ago by ▴ 20 • written 4.4 years ago by • 0
0
votes
2
replies
1.7k
views
Is it possible to annotate a file for the human genome using the command line without using an amino acid sequence
Annotation human DNA PROVEAN
4.4 years ago by kamanovae ▴ 100
1
vote
0
replies
1.0k
views
braker2 output: gff file is missing and species folder is empty
prothint braker2 genome braker annotation
updated 4.4 years ago by 12k • written 4.4 years ago by ▴ 40
0
votes
2
replies
1.2k
views
Does GISAID fasta files contain spike protein or whole genome sequence?
sequence protein spike genome
updated 4.4 years ago by 48k • written 4.4 years ago by • 0
2
votes
0
replies
1.1k
views
Job: ELIXIR Training Coordinator (pan-European bioinformatics training)
training lifescience
updated 4.2 years ago by 45k • written 4.4 years ago by ▴ 470
1
vote
4
replies
1.9k
views
Why GC content is important on NIPT results?
NGS NIPT Sequencing
4.4 years ago by khanhlpbao • 0
1
vote
4
replies
2.2k
views
Variant calling from comparison of assembled genomes where there is only one read depth.
variant
updated 4.4 years ago by ▴ 600 • written 4.4 years ago by ▴ 150
3
votes
2
replies
1.5k
views
Finding all instances of a recurring motif in a repeat protein
repeat markov alignment motifs
4.4 years ago by NeuralCode ▴ 10
0
votes
0
replies
548
views
rpy hgu133a.db loading error
hgu133a.db python rpy
4.4 years ago by dxodnd • 0
4
votes
4
replies
3.9k
views
Help with CNV calling using ExomeDepth
exomedepth R CNV gCNV exome
updated 4.4 years ago by ▴ 50 • written 4.8 years ago by ▴ 130
2
votes
1
reply
1.1k
views
How to grep scaffold from the vcf file
introns VCF scaffolds
updated 4.4 years ago by 166k • written 4.4 years ago by ▴ 170
0
votes
1
reply
1.0k
views
For loop - mkdir and command
bash
updated 2.2 years ago by 45k • written 4.4 years ago by • 0
2
votes
6
replies
4.0k
views
why my volcano plot looks strange?
wilcox.test RNAseq Metabolomics LCMS
updated 4.4 years ago by 21k • written 4.4 years ago by ▴ 40
0
votes
3
replies
6.4k
views
How to interpret multiqc report
QC multiqc rna-seq
updated 4.4 years ago by ★ 1.5k • written 4.4 years ago by ▴ 30
5
votes
2
replies
2.2k
views
Can you suggest any journal without any publication fee for publishing microbiology and bioinformatics papers?
journals microbiology publications
updated 4.2 years ago by 45k • written 4.4 years ago by ▴ 20
3
votes
1
reply
1.2k
views
How to get all microRNA target genes?
miRNA multimir microRNA targetgenes tarbase
updated 4.4 years ago by 22k • written 4.4 years ago by ▴ 10
1
vote
3
replies
3.4k
views
vcftools intersect vs bedtools intersect
bedtools vcf vcftools
updated 4.1 years ago by 45k • written 4.4 years ago by • 0
2
votes
4
replies
4.5k
views
How to extract sequences from fasta that have a certain length ?
minlength fasta
updated 4.4 years ago by 8.7k • written 4.4 years ago by ▴ 140
2
votes
5
replies
1.4k
views
Plotting Differential Induced Genes across timepoints in DESEQ2
Bioconductor MA RNA-seq DESEQ2
4.4 years ago by raisamathenge ▴ 30
0
votes
5
replies
5.3k
views
How to highlight DE genes in plotMD ?
edgeR plotMD volcanoplot mirnaseq
updated 4.4 years ago by • 0 • written 7.4 years ago by ▴ 110
121,903 results • Page 673 of 2439
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Tried building a compact sequence format with 4-bit storage
Shift in RNA 3' position, Term-Seq vs RNASeq
Comment: STARlong for pacbio Isoseq reads
Comment: Automatically annotating a feature using a genbank file
Answer: Is this PCA plot correct??
Answer: Is this PCA plot correct??
Comment: Is this PCA plot correct??
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Answer: Gene Ontology Enrichment with LOC gene IDs in Common Carp (Cyprinus carpio) by GenoMax 153k
`LOC` gene ID's are often assigned to uncharacterized genes and you may not get useful information from databases for them, thus they will …
Comment: Whole Genome Sequencing IG regions by GenoMax 153k
> are the calls I am seeing reliable or should I take them with something of a pinch of salt? Not sure what calls you are referring to but…
Comment: RNA-SEQ where only a subset of genes is of interest by piffelpaff • 0
Sorry to revive this ancient thread but I'm currently discussing the same question with some people in my lab and would love to somebody po…
Answer: STARlong for pacbio Isoseq reads by YuZJ • 0
Hello, you may try deSALT (DOI: 10.1186/s13059-019-1895-9, GitHub: ydLiu-HIT/deSALT) or uLTRA (DOI: 10.1093/bioinformatics/btab540, GitHub:…
Comment: Shift in RNA 3' position, Term-Seq vs RNASeq by acvill ▴ 350
Without knowing the details of the Term-seq method, could the 38 nt shift be accounted for by the difference in the position of the ribosom…
Comment: STARlong for pacbio Isoseq reads by Buffo ★ 2.4k
Thanks, I'll give it a try.
Comment: STARlong for pacbio Isoseq reads by GenoMax 153k
You could give `mapPacBio.sh` from BBMap suite a try while you wait for other answers. That works for reads up to 6 kb. BBMap has a new hom…
Comment: STARlong for pacbio Isoseq reads by Buffo ★ 2.4k
The average is 1.8kb. I was planning to post it on GitHub, but it seems like the repository has been unattended for the last months, so I d…
Comment: Getting just fastqc.zip file? by GenoMax 153k
Yes, You can either use it on command line or use the graphical user interface.
Comment: STARlong for pacbio Isoseq reads by GenoMax 153k
What is the average length of your reads? That error sounds like a bug, so you may want to post that on `STAR` repo as an issue. I assume …
Comment: Getting just fastqc.zip file? by pourhangleila95 • 0
I want to perform fastQC on my data.Do you use fastQC software for doing it?
Comment: Whole Genome Sequencing IG regions by 719 • 0
Sorry for the poor wording of the original post, also should say I really appreciate people taking a moment to look at my post. My main con…
Comment: Is total miRNA in EV constant? Implications for library size normalization. by Thomas.H.Hampton ▴ 10
Thanks again for your carefully considered reply. You asked what I am hoping to learn from a DE analysis. Autologous stem cells are well …
Comment: Subsetting before QC in Spatial Transcriptomics by Kent ▴ 30
Hi ATpoint, thank you very much for the helpful insight! I'm still doing some literature reading on this myself, but have you come across a…
Comment: Whole Genome Sequencing IG regions by ATpoint 89k
The question is what you are after. Is this a disease setup, or...well, what is this all about. Generally, these regions are hotspots of hy…
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