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121,919 results • Page
710 of 2439
Sort: Rank
Rank
Views
Votes
Replies
0
votes
9
replies
3.1k
views
BioPython local blast different results than blast+ local blast
blast
biopython
blast+
python
updated 4.6 years ago by
Biostar
20 • written 7.2 years ago by
s.l.rinzema
• 0
0
votes
0
replies
838
views
Gene expression values each samples (replicates) using `AverageExpression` function
SEURAT
SINGLE-CELL
averageexpression
4.6 years ago by
singcell
▴ 10
5
votes
2
replies
1.0k
views
Reorder "matrix" "array"
R
4.6 years ago by
imrankhanbioinfo
▴ 70
0
votes
0
replies
901
views
Tumor mutation burden data
sequencing
TCGA
4.6 years ago by
wenbinm
▴ 40
0
votes
4
replies
1.7k
views
Cuffmerge Error: Converting GTF files to SAM
software error
cufflinks
cuffmerge
updated 4.6 years ago by
GenoMax
153k • written 4.6 years ago by
sahar.salimi92
• 0
1
vote
4
replies
1.5k
views
Forum:
Very high ratio of cases to controls - how to increase statistical power?
gwas
SNP
updated 2.5 years ago by
Ram
45k • written 4.6 years ago by
mfshiller
▴ 20
0
votes
1
reply
821
views
How a can extrac regions V3 and V4 of SILVA database 138?
sequencing
rRNA
updated 4.6 years ago by
Michael
56k • written 4.6 years ago by
1731147b
• 0
2
votes
7
replies
3.7k
views
could not load index bfc tools af-dis plugin
bcftools
vcf
af-dist
imputation
updated 2.3 years ago by
Ram
45k • written 4.6 years ago by
kstafford32
• 0
3
votes
6
replies
7.2k
views
How To Trim An Arb Reference Database To A Specific 16S Region
database
trimming
phylogenetics
metagenomics
updated 4.6 years ago by
1731147b
• 0 • written 12.4 years ago by
samlambrechts299
▴ 170
0
votes
0
replies
998
views
Filtering vcf with dbSNP
dbSNP
filter
bcftools
updated 4.6 years ago by
Biostar
20 • written 4.6 years ago by
whb
▴ 60
0
votes
0
replies
653
views
p-adjusted threshold in pathfindR
pathfindR
pathway-enrichment-analysis
updated 2.5 years ago by
Ram
45k • written 4.6 years ago by
mrashad
▴ 80
1
vote
4
replies
1.4k
views
Forum:
is valid to apply several cut offs thresholds to a data-matrix used to perform coexpression analysis until reach the desire result?
RNA-Seq
matrix-filtering
coexpression-analysis
updated 2.5 years ago by
Ram
45k • written 4.6 years ago by
cyntsc10
• 0
0
votes
0
replies
571
views
comparative genomic analysis of phages
BACTERIOPHAGES
PhamDB
ANI
Comparative genomics
4.6 years ago by
4mumumu
• 0
2
votes
1
reply
949
views
I want to create a box plot for RNA-Seq data, but i am new to R, so i don't know, how to perform this task
RNA-Seq
R
4.6 years ago by
rishav513
▴ 30
1
vote
1
reply
1.4k
views
UK biobank exome filtering
exome
UKbiobank
updated 4.3 years ago by
Scott
• 0 • written 4.6 years ago by
Floris Brenk
★ 1.0k
0
votes
0
replies
840
views
Extract monophyletic subtree with ETE3 toolkit
ETE3
python3
4.6 years ago by
arunprasanna83
▴ 60
2
votes
8
replies
3.4k
views
Lanes in the context of RNA-SEQ data
RNA-Seq
updated 4.6 years ago by
GenoMax
153k • written 4.6 years ago by
Sammy
▴ 30
0
votes
0
replies
1.1k
views
Cancer Cell Line Encyclopedia (CCLE) raw dose response data
drug-response
ccle
gene
drug-sensitivity
updated 2.2 years ago by
Ram
45k • written 4.6 years ago by
durdam4494
• 0
0
votes
0
replies
1.0k
views
How to do differential CNA analysis?
CNA
GISTIC
Differential analysis
4.6 years ago by
Raheleh
▴ 260
0
votes
2
replies
3.0k
views
Barplot: error Warning message: Removed rows containing missing values (geom_bar).
R
updated 4.6 years ago by
rpolicastro
13k • written 4.6 years ago by
Claire
• 0
3
votes
3
replies
1.3k
views
how to use unix tools to convert VCF genotypes like '1|1' to this '2'
bcftools
unix
updated 2.3 years ago by
Ram
45k • written 4.6 years ago by
curious
▴ 890
0
votes
0
replies
684
views
Suggestions for analyze dN, dS rate and omega (dN/dS ratio) result?
sequence
gene
updated 4.6 years ago by
GenoMax
153k • written 4.6 years ago by
mauricio.1313
• 0
3
votes
3
replies
5.7k
views
Mapping GRCh38 to ENSEMBL / UCSC ,Gene, transcript , cDNA and Protein IDs and Sequence
RNA-Seq
SNP
genome
Mappping
ENSEMBL
updated 4.6 years ago by
Biostar
20 • written 8.7 years ago by
inambioinfo
▴ 110
1
vote
4
replies
1.0k
views
How to match data from file 2 on 1st with deleting unmatched data
SNP
gene
sequence
4.6 years ago by
shubhamkumbhar420
▴ 40
1
vote
0
replies
977
views
Parameter setting of NGSadmix
NGSadmix
4.6 years ago by
Daier
▴ 20
0
votes
1
reply
656
views
RNA-seq DEGs downstream analysis and reporting in literature
RNA-Seq
gene
R
updated 4.6 years ago by
i.sudbery
22k • written 4.6 years ago by
Ankur B. Sharma
▴ 20
0
votes
0
replies
366
views
Export Large deepSNV File
next-gen
snp
4.6 years ago by
arno
• 0
29
votes
16
replies
40k
views
7 follow
What Is A "Lane" In Next Generation Sequencing Context?
sequencing
updated 4.6 years ago by
Sammy
▴ 30 • written 13.2 years ago by
Abdel
▴ 410
0
votes
0
replies
726
views
comparative genomics BPGA
genome
gene
4.6 years ago by
glady
▴ 320
2
votes
7
replies
1.2k
views
Speed up the blast option remove.
blast
online
updated 4.6 years ago by
5heikki
11k • written 4.6 years ago by
K.Gee
▴ 40
3
votes
2
replies
2.1k
views
Pyranges: obtaining sets of overlaps or overlap pairs
pyranges
overlaps
overlap pairs
List overlaps
updated 4.6 years ago by
Alex Reynolds
36k • written 4.6 years ago by
Bosberg
▴ 50
0
votes
0
replies
744
views
Help with GISTIC results
GISTIC
4.6 years ago by
zizigolu
★ 4.4k
3
votes
4
replies
1.8k
views
htseq-count returns 0 count for all
RNA-Seq
htseq-count
updated 20 months ago by
lieven.sterck
15k • written 4.6 years ago by
ziziqolo
▴ 10
2
votes
3
replies
1.1k
views
Help with analyzing NCBI tissue expression data - solr xml file
solr
ncbi
tissue expression
xml
RNA-Seq
4.6 years ago by
j.matt.franklin
• 0
2
votes
0
replies
2.8k
views
deepSplit=2 vs deepSplit=4
gene
WGCNA
Coexpression
R
updated 4.6 years ago by
Biostar
20 • written 4.7 years ago by
hubsnets
▴ 30
2
votes
0
replies
2.8k
views
recommended minimum cell numbers to pseudobulk for DE comparisons between groups
RNA-Seq
scRNA
single-cell
4.6 years ago by
Sentinel156
▴ 190
0
votes
0
replies
580
views
replicate analyses and divide snp subsetsin admixture
admixture subsets replicate
4.6 years ago by
Daier
▴ 20
0
votes
0
replies
695
views
replicate analyses in admixture
admixture replicate
4.6 years ago by
Daier
▴ 20
1
vote
0
replies
1.2k
views
error unrecognized command line option fPIC
Compilation error
mismatched makefile environment
updated 4.6 years ago by
Ram
45k • written 4.6 years ago by
Ashley
▴ 90
0
votes
1
reply
768
views
gene ID conversion
RNA-Seq
gene
updated 4.6 years ago by
sysboolean
▴ 90 • written 4.6 years ago by
Adishi
• 0
0
votes
2
replies
1.9k
views
Intron orders transcripts like encoded amino acid
mRNA
amino-acid
RNA-Seq
intron
transcript
updated 2.6 years ago by
Ram
45k • written 10.4 years ago by
kevberm
• 0
1
vote
5
replies
1.8k
views
bcf tools fixref error
snpflip
bcftools
topmed
fixref
imputation
updated 2.3 years ago by
Ram
45k • written 4.6 years ago by
kstafford32
• 0
2
votes
1
reply
1.7k
views
samtools index error
alignment
updated 4.6 years ago by
Pierre Lindenbaum
166k • written 4.6 years ago by
pt.taklifi
▴ 70
0
votes
0
replies
1.2k
views
Job:
Senior Bioinformatician for Oligonucleotide Therapeutics at AstraZeneca Gothenburg (Sweden)
oligonucleotides
genomics
updated 2.5 years ago by
Ram
45k • written 4.6 years ago by
Sergio Martínez Cuesta
▴ 230
0
votes
0
replies
751
views
LD network plot using netGWAS
R
snp
ld
4.6 years ago by
ziv_attia
• 0
0
votes
0
replies
688
views
Bacterial RNA-SEQ Aligner Rockhopper
RNA-Seq
4.6 years ago by
Sammy
▴ 30
2
votes
1
reply
1.2k
views
BAM FLAG mate unmappedand mate reverse strand
BAM
updated 4.6 years ago by
i.sudbery
22k • written 4.6 years ago by
esimonova.me
▴ 30
0
votes
0
replies
894
views
Why does KAAS use SBH for partial genomes?
orthology
blast
reciprocal best hit
annotation
4.6 years ago by
Dunois
★ 2.9k
0
votes
2
replies
1.9k
views
antiSMASH error problem
genome
gene
updated 4.6 years ago by
Ram
45k • written 4.6 years ago by
glady
▴ 320
4
votes
7
replies
1.9k
views
Series matrix manual download now not supported (??)
GEO
updated 4.6 years ago by
Mensur Dlakic
★ 30k • written 4.6 years ago by
petrandent
▴ 50
121,919 results • Page
710 of 2439
Recent Votes
A: Binning Over Genes And Calculating The Coverage [Bedops/Bedmap]
Answer: [vg giraffe] Unable to add read group to BAM file
Comment: [vg giraffe] Unable to add read group to BAM file
Answer: [vg giraffe] Unable to add read group to BAM file
Answer: vcf multisample
Answer: vcf multisample
Answer: vcf multisample
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Recent Replies
Comment: miRNA low mapping ratings
by
Ant
▴ 50
The first one it's the results from Cutadapter and the second block from miRDeep2.
Comment: miRNA low mapping ratings
by
Ant
▴ 50
Thanks for the reply, when running: cutadapt -a AACTGTAGGCACCATCAAT -M 30 -o example_trimmed.fastq.gz data/xxx.fastq.gz, the sequence le…
Comment: Help with species tree with orthofinder, iqtree and branch labeling
by
GenoMax
153k
> I don’t have clear species labels in my headers, only sequence IDs. I have not used iqtree, so this is only a thought ... should it be y…
Comment: Help with species tree with orthofinder, iqtree and branch labeling
by
san96
▴ 190
Thank you so much.
Comment: [vg giraffe] Unable to add read group to BAM file
by
saruman
▴ 10
Yes, it seems so. Thank you.
Comment: cellranger mkref fail/error
by
GenoMax
153k
> The thing is that I do not have a genome for these organisms. That is not what `cellranger mkref` is expecting. You could consider alt…
Comment: cellranger mkref fail/error
by
tatsispolychronis
• 0
The thing is that I do not have a genome for these organisms. i made a transcriptome using TRinity and this is what I am feeding it. I do n…
Comment: Genome Assembly QC from BAM files
by
SomeOne
▴ 240
Hi, I am not sure if i can call them good assemblies. Although based on QUAST and BUSCO stats, everything looks too good but somehow i hav…
Comment: cellranger mkref fail/error
by
GenoMax
153k
You need to provide the genome reference for the `--fasta` option as noted in https://www.10xgenomics.com/support/software/cell-ranger/late…
Answer: Methods to analyse structural similarity: co-evolution vs convergence
by
Joe
22k
Without historical data (ancient DNA) there's no way to ever really know this for certain. The best we can do is make inferences based on t…
Answer: vcf multisample
by
Pierre Lindenbaum
166k
eg : https://ega-archive.org/datasets/EGAD50000001683 > Merged VCF file from sporadic Meniere disease cohort (found using https://dat…
Comment: Genome Assembly QC from BAM files
by
GenoMax
153k
Since this saga has been on going for a long time, it will be helpful to add a comment as to how you finally got to this point of what seem…
Comment: Methods to analyse structural similarity: co-evolution vs convergence
by
dthorbur
★ 3.1k
A few comments. 1. Coevolution of a trait between 2 organisms can end up with a convergent structure with another organism. It's not e…
Comment: Genome Assembly QC from BAM files
by
SomeOne
▴ 240
Thank you. Based on the description these two look really what i wanted to see.
Comment: miRNA low mapping ratings
by
i.sudbery
22k
Also, can you just clarify that the output above is from cutadapt or form miRDeep2?
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