Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Post does not exist.
Limit : all time
all time
today
this week
this month
this year
116,934 results • Page
1 of 2339
Sort: Rank
Rank
Views
Votes
Replies
0
votes
0
replies
16
views
Filtering VCF files based on VAF giving incorrect results
bcftools
GATK
Bioinformatics
picard
VCF
1 hour ago by
Arton
• 0
0
votes
0
replies
16
views
Forum:
perseus software (version 1.5.5)
preseus
mass
spectrometry
data
2 hours ago by
iqra
• 0
0
votes
0
replies
36
views
Why the shape of RCS is contradictory to the p value for nonlinearity.
RCS
ggplot2
ggplot
R
updated 3 hours ago by
GenoMax
142k • written 4 hours ago by
Dude
• 0
795
votes
167
replies
143k
views
109 follow
News:
The Biostar Handbook. A bioinformatics e-book for beginners.
training
handbook
updated 3 months ago by
Biostar
2.8k • written 7.4 years ago by
Istvan Albert
100k
0
votes
0
replies
35
views
NEURON, Brian2, NEST, or PyNN
NEST
NEURON
PyNN
Brian2
4 hours ago by
brunofelicianodeomena
• 0
0
votes
2
replies
76
views
Alphaphold 3 pLDDT coloring scheme in chimerax?
ChimeraX
Alphaphold
Alphaphold3
1 hour ago by
mbrav005
• 0
0
votes
1
reply
63
views
Polish a large genome with Pilon
Pilon
Pacbio
Polish
Illumina
2 hours ago by
sansan_96
▴ 90
0
votes
1
reply
83
views
Doubt about the process of annotation, detection, identification and classification of transposable elements
annotation
TransposableElements
updated 8 hours ago by
Mensur Dlakic
★ 27k • written 8 hours ago by
MarcosCosta
• 0
2
votes
2
replies
136
views
Genome Visualization Tools
bacterial
genome
updated 10 hours ago by
GenoMax
142k • written 10 hours ago by
dlera.lozano
▴ 10
1
vote
3
replies
146
views
RSeQC : infer_experiment.py Error: Could not retrieve index file
RSeQC
RNA-Seq
updated 9 hours ago by
Ram
43k • written 10 hours ago by
Prawesh
• 0
0
votes
2
replies
144
views
Using ggplotly in R
ggplot
ggplotly
2 hours ago by
jen
▴ 10
0
votes
1
reply
115
views
Why does assigning genes with biomart give me different values than using a transcripts_to_genes.txt file?
biomart
RNAseq
kallisto
updated 10 hours ago by
GenoMax
142k • written 11 hours ago by
bioinfo
▴ 150
0
votes
3
replies
199
views
RNAseq RNA content
mRNA
Linux
rRNA
RNA-seq
RNA
updated 11 hours ago by
noodle
▴ 580 • written 15 hours ago by
doramora
▴ 10
0
votes
1
reply
102
views
Post-imputation QC for input into GWAS analyses
gwas
prs
updated 12 hours ago by
LauferVA
4.2k • written 13 hours ago by
graeme.thorn
▴ 100
0
votes
1
reply
100
views
Using Cutadapt to trim adapters from paired-end small RNA sequence data
trimming
adapters
cutadapt
sRNA-seq
smallRNA
updated 13 hours ago by
GenoMax
142k • written 13 hours ago by
melissa.joubert
• 0
0
votes
0
replies
72
views
Calculate allelic frequency from VEP output vcf file
VEP
variant
13 hours ago by
ramiro.barrantes
• 0
4
votes
1
reply
162
views
Extracting only 4-fold degenerate sites from gene sequences/alignments?
alignments
15 hours ago by
J.
▴ 40
0
votes
0
replies
71
views
Is there a real ground truth for CNV data?
CNV
16 hours ago by
jennyp0706
• 0
0
votes
3
replies
168
views
Biomart issue, why so few 3'utrs?
utr
biomart
updated 16 hours ago by
GenoMax
142k • written 1 day ago by
RNAseqer
▴ 270
1
vote
1
reply
105
views
sci-RNA-seq
Seurat
sci-RNA-seq
updated 11 hours ago by
Ram
43k • written 16 hours ago by
kilcdincer
▴ 10
0
votes
0
replies
64
views
Retrieving ceRNA data from the starBase or ENCORI Web API
ceRNA
ENCORI
WebAPI
microRNA
starBase
updated 17 hours ago by
GenoMax
142k • written 17 hours ago by
Bhavya
• 0
4
votes
4
replies
2.9k
views
CNVkit for somatic copy number detection
cnv
cnvkit
exome
WES
updated 19 hours ago by
Anitha
• 0 • written 5.1 years ago by
stephaniem
• 0
1
vote
7
replies
308
views
Overlapping Ranges within Granges object
Genomicranges
IRanges
GRanges
2 hours ago by
ntsopoul
▴ 60
0
votes
3
replies
165
views
How to access GWAVA software of data
GWAVA
updated 17 hours ago by
GenoMax
142k • written 20 hours ago by
nonaddldy
▴ 10
0
votes
1
reply
137
views
Inquiry about deseq2 transformation
RNA-seq
deseq2
updated 23 hours ago by
ATpoint
82k • written 1 day ago by
Chen
• 0
1
vote
1
reply
136
views
The total expressed genes in RNA-Seq data
RNA-SEQ
updated 21 hours ago by
ATpoint
82k • written 1 day ago by
Pegasus
▴ 100
0
votes
1
reply
106
views
What is the bin size for Bamcompare?
chip-seq
deeptools
bamcompare
updated 9 hours ago by
Ram
43k • written 1 day ago by
Emily
▴ 20
1
vote
1
reply
153
views
Is there any way to modify this pie chart ?
pie
ggplot
R
chart
updated 22 hours ago by
zx8754
11k • written 1 day ago by
ohtang7
▴ 40
0
votes
0
replies
72
views
In what situations is 'outer' typically used when using anndata.concat()?
concat
anndata
scanpy
1 day ago by
Spring
• 0
0
votes
2
replies
144
views
Is it necessary to do genotype quality filteration after snp calling with GATK
snp
filteration
genotype
quality
GATK
21 hours ago by
IdaHao0921
• 0
0
votes
3
replies
312
views
Snakemake wrapper issue
fastqc
snakemake
updated 1 day ago by
Wei-Chen Pan
• 0 • written 9 weeks ago by
Matvii Mykhailichenko
• 0
0
votes
0
replies
95
views
Differential Expression with limma: Contrast and Design Matrix, combinatorial approach valid?
limma
1 day ago by
Holly
• 0
2
votes
5
replies
228
views
What does the 'E%' represent in BUSCO results?
BUSCO
updated 1 day ago by
Philipp Bayer
8.5k • written 1 day ago by
林明德
• 0
0
votes
4
replies
2.3k
views
MGLTools does not work in windows 11
windows-11
Autodock
windows
MGLTools
updated 9 hours ago by
Ram
43k • written 13 months ago by
mohyeddine.taleb
• 0
2
votes
4
replies
181
views
Help with IGV abbreviation
igv
updated 9 hours ago by
Ram
43k • written 1 day ago by
GeneC
• 0
0
votes
1
reply
140
views
How to process Bulk WES data?
WES
WGS
updated 1 day ago by
GenoMax
142k • written 1 day ago by
wyuan37
• 0
0
votes
1
reply
139
views
Can diamond prepdb be used to make a taxonomically aware database?
blast
diamond
taxonomy
updated 1 day ago by
GenoMax
142k • written 1 day ago by
cedric.blais
• 0
0
votes
2
replies
407
views
News:
FINAL CALL: 8th Berlin Summer School in NGS Data Analysis - Only a few last places available
DNA-seq
variant-calling
RNA-seq
illumina
transcriptomics
1 day ago by
David Langenberger
11k
0
votes
1
reply
128
views
Empty .best and .sing2 Files After Running Demuxlet
Biosciences
Demuxlet
updated 1 day ago by
Ram
43k • written 1 day ago by
eking28
• 0
1
vote
5
replies
446
views
featureCounts output summary assigned value higher than uniquely mapped reads from HISAT2
RNA-seq
featureCounts
HISAT
updated 9 hours ago by
Ram
43k • written 6 days ago by
Prawesh
• 0
1
vote
3
replies
386
views
Clarification regarding SAM flags "mate reverse strand" (flag 16/0x10) and "read reverse strand" (flag 32/0x20)
PE
BAM
SAM
flag
paired-end
1 day ago by
kalavattam
▴ 190
1
vote
2
replies
243
views
How to interpret infinite odds ratio?
statistics
19 hours ago by
Lukas
• 0
1
vote
2
replies
153
views
Duplicated sequence samtools
bowtie2
samtools
updated 1 day ago by
GenoMax
142k • written 1 day ago by
Moinuddin
• 0
0
votes
0
replies
92
views
reference-free assembly error assessment tools
assembly
1 day ago by
lagartija
▴ 160
1
vote
2
replies
192
views
Benchmarking RNASeq Variant Calling Pipeline (Short Reads)
rna-seq
vcf
variant-calling
updated 1 day ago by
lagartija
▴ 160 • written 1 day ago by
Esraa
• 0
2
votes
0
replies
127
views
Herald:
The Biostar Herald for Monday, May 13, 2024
herald
1 day ago by
Biostar
2.8k
0
votes
1
reply
125
views
Splitting Seurat object by sample layers
seurat
updated 1 day ago by
Ram
43k • written 1 day ago by
kilcdincer
▴ 10
0
votes
4
replies
227
views
Galaxy StringTie error
stringtie
galaxy
19 hours ago by
trkfs
• 0
0
votes
0
replies
94
views
dbNSFP sift scores integration
SIFT
VEP
dbNSFP
1 day ago by
atariw
▴ 10
0
votes
1
reply
142
views
Mouse ribosome sequences in fasta format
fasta
mm10
rRNA
updated 1 day ago by
GenoMax
142k • written 2 days ago by
octpus616
▴ 100
116,934 results • Page
1 of 2339
Recent Votes
Comment: Bamutils/ClipOverlap
Comment: How to calculate coverage of Nanopore long read data?
Comment: Overlapping Ranges within Granges object
Answer: Difference between Genotype 0|1 and 1|0 in VCF file?
Answer: how to keep reads in a fasta file based on a seq id list in R?
Answer: The total expressed genes in RNA-Seq data
C: Re-arrange conditions in Seurat
Recent Locations •
All
United States,
1 minute ago
Australia,
1 minute ago
Japan,
2 minutes ago
India,
3 minutes ago
Riyadh,
3 minutes ago
Pakistan,
4 minutes ago
China,
7 minutes ago
Recent Awards •
All
Popular Question
to
chrisk
• 0
Popular Question
to
mbrav005
• 0
Popular Question
to
Sofia
• 0
Popular Question
to
jen
▴ 10
Popular Question
to
nitinra
▴ 50
Scholar
to
Pierre Lindenbaum
161k
Scholar
to
Ram
43k
Recent Replies
Comment: BWA alignment
by
a.alnawfal.1992
▴ 260
that's great, but i believe the issue is related to stdin rather than index
Comment: BWA alignment
by
a.alnawfal.1992
▴ 260
it is not!!
Comment: How to calculate coverage of Nanopore long read data?
by
Arton
• 0
Thank you! I eventually used the information generated by three tools (samtools coverage+ mosdepth + NanoPlot).
Comment: Alphaphold 3 pLDDT coloring scheme in chimerax?
by
mbrav005
• 0
Thank you Sir! you are right my model is not very good. Do You know how I can improve the scores. Also I am able to color the structure by …
Comment: Polish a large genome with Pilon
by
sansan_96
▴ 90
..........
Comment: Overlapping Ranges within Granges object
by
ntsopoul
▴ 60
you are on to something… if I use reduce to find the “overlaping regions” in a secon GRanges object, what do I do next?
Comment: Using ggplotly in R
by
jen
▴ 10
Thank you Jared for your response. I took a look at the documentation you provided and am trying my best to follow along, but can't seem to…
Comment: Getting the coding_sequence.fasta from the .gff file from the AUGUSTUS gene pred
by
Juke34
8.6k
Right I heard there is an issue since Perl v5.36. You may have better luck using conda. Or the best way is to use the container. Or downgra…
Answer: Alphaphold 3 pLDDT coloring scheme in chimerax?
by
Mensur Dlakic
★ 27k
pLDDT scores are stored in the so-called B-factor column in PDB files. Below the `File` ribbon select `Molecule Display` and click on `b-fa…
Comment: Genome Visualization Tools
by
dlera.lozano
▴ 10
Thank you so much
Answer: Doubt about the process of annotation, detection, identification and classificat
by
Mensur Dlakic
★ 27k
Depends on the context. `TE detection` and `TE identification` could mean the same thing if they refer to presence/absence of TEs. `TE iden…
Comment: featureCounts output summary assigned value higher than uniquely mapped reads fr
by
Ram
43k
Please accept your own answer to mark the post as solved.
Comment: RSeQC : infer_experiment.py Error: Could not retrieve index file
by
Ram
43k
A small educational note: if an answer was helpful, you should upvote it; if the answer resolved your question, you should mark it as accep…
Comment: RSeQC : infer_experiment.py Error: Could not retrieve index file
by
Prawesh
• 0
thanks, it's working now.
Answer: Genome Visualization Tools
by
GenoMax
142k
@cmdcolin has a great list here: https://github.com/cmdcolin/awesome-genome-visualization
Traffic: 1897 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6