Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : all time
all time
today
this week
this month
this year
116,865 results • Page
1 of 2338
Sort: Rank
Rank
Views
Votes
Replies
0
votes
0
replies
3
views
Too many unpaired forward reads found by Trimmomatic
Trimmomatic
just now by
SilhouetteQ
• 0
0
votes
0
replies
15
views
How are score_weights calculated in this code?
cell
single
33 minutes ago by
carolofharvest
▴ 40
0
votes
0
replies
21
views
How to convert Haps file to vcf file?
pre-phasing
GWAS
imputation
2 hours ago by
SeoGyun
• 0
2
votes
12
replies
2.6k
views
6 follow
CNVKIT - unable to produce scatter and diagram pdfs
cnvkit
updated 2 days ago by
Anitha
• 0 • written 4.8 years ago by
ww22runner
▴ 60
0
votes
0
replies
33
views
Trouble converting tfam and tped to map and ped files
plink
ped
tfam
tped
map
4 hours ago by
Samantha
• 0
0
votes
1
reply
59
views
Microbial Signal Transduction Database
MiST
updated 2 hours ago by
zx8754
11k • written 4 hours ago by
Shravani
• 0
0
votes
0
replies
30
views
input file in rmats
rmats
updated 2 hours ago by
zx8754
11k • written 4 hours ago by
Lambodarswain316
• 0
795
votes
167
replies
143k
views
109 follow
News:
The Biostar Handbook. A bioinformatics e-book for beginners.
training
handbook
updated 3 months ago by
Biostar
2.7k • written 7.4 years ago by
Istvan Albert
100k
0
votes
1
reply
72
views
DESeq2 error
DESeq2
updated 5 hours ago by
ATpoint
82k • written 8 hours ago by
sooni
▴ 20
0
votes
0
replies
30
views
Allele specific expression of imprinted gens from 10x scRNA-seq data
scrna-seq
imprinted
10x
genes
6 hours ago by
singcell
• 0
0
votes
1
reply
73
views
When should I use R-MarkDown over R-Script ?
r
rscript
rmarkdown
updated 3 hours ago by
ATpoint
82k • written 6 hours ago by
Amr
▴ 160
0
votes
2
replies
76
views
LncRNA Nomenclature
ENST
nomenclature
lncrna
GBB
ENSG
4 hours ago by
jain72744
▴ 10
0
votes
0
replies
31
views
Nomalization - TCGA, RNA-seq and Microarray
TCGA
RNA-seq
Nomalization
Microarray
6 hours ago by
jain72744
▴ 10
5
votes
2
replies
89
views
EdgeR - relationship between logFC and coefficients
differential-expression
r
edger
updated 6 hours ago by
Gordon Smyth
★ 7.1k • written 8 hours ago by
gBioStar5
▴ 10
2
votes
5
replies
251
views
Importing a fastq file
Fastq
updated 8 hours ago by
size_t
▴ 120 • written 1 day ago by
oumo
• 0
0
votes
0
replies
48
views
Question about methylation location
Methylation
WGBS
bisulfide
11 hours ago by
Eren
• 0
0
votes
0
replies
50
views
Krona Pie-chart taxanomy IDs were not found warning. Taxonomy Classification Metagenomics
Classification
Metagenomics
Krona
Kraken2
12 hours ago by
Aytaç
• 0
0
votes
0
replies
60
views
How do I calculate SE or P value if I only have BETA
prscsx
beta
se
pvalue
updated 2 hours ago by
zx8754
11k • written 13 hours ago by
curious_butterfly
• 0
0
votes
0
replies
56
views
supervised admixture
supervised
admixture
14 hours ago by
RT
▴ 10
0
votes
0
replies
61
views
Two-Sample Mendelian Randomization: Association between Instrumental Variable and Outcome
Randomization
Mendelian
two-sample
16 hours ago by
Nikki
• 0
2
votes
0
replies
58
views
News:
course on Landscape Genomics at the EPFL in Lausanne (June 17-21)
LandscapeGenomics
SNPs
LocalAdaptation
GIS
16 hours ago by
carlopecoraro2
★ 2.5k
0
votes
8
replies
296
views
Different output for read length
samtools
BAM
15 hours ago by
marco.barr
▴ 100
0
votes
1
reply
272
views
Snakemake fails to find conda in PBS
snakemake
updated 18 hours ago by
tim.booth
▴ 60 • written 28 days ago by
yixinzeng
• 0
0
votes
2
replies
127
views
Presence of unknown sites in ANNOVAR output file
ANNOVAR
updated 18 hours ago by
GenoMax
142k • written 19 hours ago by
sainavyav22
• 0
2
votes
3
replies
114
views
Truncated metadata file report from ENA Portal API
ena
python
updated just now by
GenoMax
142k • written 19 hours ago by
Giulia
• 0
0
votes
0
replies
65
views
What is workflow for de-novo assembling of nuclear and mito genomes of non-model organisms
de-novo
WGS
DNA-seq
assembling
19 hours ago by
Matvii Mykhailichenko
• 0
0
votes
3
replies
470
views
JASPAR2024_getMatrixSet error
JASPAR2024
getMatrixSet
updated 20 hours ago by
Ram
43k • written 11 weeks ago by
maplewj
▴ 10
0
votes
3
replies
150
views
How to convert normalized BigWig file to count matrix?
count-matrix
BigWig
updated 20 hours ago by
Ram
43k • written 22 hours ago by
feather-W
• 0
0
votes
3
replies
203
views
bcftools - reducing to "sites-only"?
sites-only
bcftools
updated 21 hours ago by
Pierre Lindenbaum
161k • written 1 day ago by
Matthew
• 0
3
votes
4
replies
2.9k
views
Have you ever obtained user guide of ExomeCNV?
CNV
updated 4.4 years ago by
lffu_0032
▴ 90 • written 5.2 years ago by
oghzzang
▴ 50
0
votes
1
reply
93
views
input file for alternative splicing in rmats in linux
rmats
updated 19 hours ago by
Ram
43k • written 23 hours ago by
Lambodarswain316
• 0
0
votes
2
replies
161
views
Server or aws cloud- which one is better for gatk pipeline
aws
server
calling
gatk
cloud
updated 23 hours ago by
Michael
54k • written 1 day ago by
ashaneev07
▴ 20
1
vote
1
reply
399
views
ComBat_Seq stuck adjusting the data
Batch-Effect
RNAseq
ComBat-Seq
updated 1 day ago by
Jaïr
• 0 • written 4 months ago by
NorbertK
▴ 10
4
votes
3
replies
2.3k
views
How to solve the error 'ERROR::MATE_NOT_FOUND:Found xxx unpaired mates' when run SamToFastq
samtofasq
picard
validatesamfile
updated 23 hours ago by
Pierre Lindenbaum
161k • written 1 day ago by
Lila M
★ 1.2k
2
votes
3
replies
161
views
Nextflow: how to get the process work dir, within the process
nextflow
updated 1 day ago by
Pierre Lindenbaum
161k • written 1 day ago by
ScottDansk
▴ 10
1
vote
0
replies
94
views
What is Deepvariant default filtering values ?
vcf
calling
filter
variant
deepvariant
1 day ago by
Shae
▴ 10
0
votes
1
reply
151
views
Enhanced Volcano-Cut off
foldchange
enhancedvolcano
updated 1 day ago by
marco.barr
▴ 100 • written 1 day ago by
odi
▴ 10
0
votes
6
replies
2.1k
views
Copy number Variation analysis using conumee
R
software error
sequencing
genome
updated 1 day ago by
GenoMax
142k • written 3.2 years ago by
gs000095
▴ 10
1
vote
1
reply
117
views
Conda severely broken after attempting mamba install
biopython
conda
mamba
pycosat
updated 1 day ago by
andres.firrincieli
3.6k • written 1 day ago by
kacollier
▴ 30
1
vote
2
replies
1.6k
views
Seurat CellCycleScoring – confused about the proper order of operations when using SCTransform
CellCycleScoring
SCTransform
Seurat
updated 1 day ago by
Li
• 0 • written 2.3 years ago by
GPM
▴ 10
0
votes
0
replies
92
views
Summary Statistics SNPs not found in Target data
SNP
plink
PRS
updated 1 day ago by
Ram
43k • written 1 day ago by
curious_butterfly
• 0
0
votes
0
replies
97
views
Long reads and fixing of mate-pair issues/marking duplicates with samtools
mate-pair
samtools
alignment
1 day ago by
Zeng Hao
▴ 40
0
votes
3
replies
208
views
Contig assembly task, errors
genetics
contig
assembly
dna
bioinformatics
updated 9 hours ago by
Philipp Bayer
8.4k • written 1 day ago by
rackbersingh
• 0
1
vote
3
replies
200
views
Help with Biopython for Beginner
Python
ORF
FASTA
Biopython
updated 19 hours ago by
GenoMax
142k • written 1 day ago by
cput
• 0
0
votes
0
replies
101
views
Annotate VCF via VEP for gnomAD annotation considering FILTER column
vep
vcf
gnomad
1 day ago by
asalimih
▴ 60
0
votes
5
replies
376
views
Filtering Multi-sample VCF file for all except one Genotype
variant
SNP
VCF
updated 18 hours ago by
Jeremy Leipzig
22k • written 2 days ago by
schmince
• 0
0
votes
2
replies
221
views
featureCounts output summary assigned value higher than uniquely mapped reads from HISAT2
RNA-seq
featureCounts
HISAT
updated 1 day ago by
i.sudbery
19k • written 1 day ago by
Prawesh
• 0
0
votes
9
replies
1.5k
views
kinannote software installation problems
kinannote
updated 1 day ago by
Emanoelle
• 0 • written 5.7 years ago by
Elizabeth
▴ 30
0
votes
1
reply
159
views
Obtaining Infinium Methylation450K manifest for hg38
TCGA
hg38
methylation
Illumina
updated 1 day ago by
marco.barr
▴ 100 • written 1 day ago by
elisheva
▴ 120
0
votes
0
replies
94
views
Pathway analysis of Bacteria from denovo genome assembly
KEGG-KASS
WGS
Pathway
denovo
updated 1 day ago by
Ram
43k • written 1 day ago by
mathavanbioinfo
▴ 90
116,865 results • Page
1 of 2338
Recent Votes
Truncated metadata file report from ENA Portal API
Comment: Truncated metadata file report from ENA Portal API
A: Download data from TCGA
A: Do I need to normalize level 3 TCGA data?
A: Seqlogo and Homer
A: hmmsearch vs hmmscan - e-value, speed, & output differences?
hmmsearch vs hmmscan - e-value, speed, & output differences?
Recent Locations •
All
United States,
just now
United States,
just now
Germany,
just now
Norway,
2 minutes ago
Spain,
2 minutes ago
Oviedo,
2 minutes ago
UK,
3 minutes ago
Recent Awards •
All
Popular Question
to
melissachua90
▴ 70
Popular Question
to
Lila M
★ 1.2k
Popular Question
to
Amr
▴ 160
Commentator
to
rpolicastro
13k
Popular Question
to
singcell
• 0
Teacher
to
Gordon Smyth
★ 7.1k
Popular Question
to
anithanagaraj93
▴ 10
Recent Replies
Comment: Truncated metadata file report from ENA Portal API
by
GenoMax
142k
While there is no timeout by default on the `get` operation, you may want to set a higher value and see if that helps, since there is a lar…
Comment: Truncated metadata file report from ENA Portal API
by
Giulia
• 0
The " missing is because of a copy-paste error in the post.. I know wget but my tool is entirely in python. I really don't understand why i…
Comment: UMI-Tools knee-method has great influence on the results of white list
by
Assa Yeroslaviz
★ 1.8k
and if I use the command as such: ``` umi_tools extract --extract-method=regex --error-correct-cell \ --bc-pattern2='(?P…
Comment: UMI-Tools knee-method has great influence on the results of white list
by
i.sudbery
19k
No, UMI-tools won't work this out automatically, you'll need to either switch read1 and read2 or use the new `--read2-only` which is curren…
Comment: Correlation Analysis
by
manaswwm
▴ 510
If your *gene_corr* data frame contains one gene instead of all genes, then the correlation would be per gene. If your *gene_corr* data fra…
Comment: UMI-Tools knee-method has great influence on the results of white list
by
Assa Yeroslaviz
★ 1.8k
I think I might know my problem. The barcodes are in this case on read2 and not on read1. Does umi-tools recognise it automatically, or do …
Comment: Microbial Signal Transduction Database
by
zx8754
11k
Did you try https://mib-jouline-db.asc.ohio-state.edu/#introduction ? >The database can also be accessed via the API. The same API points …
Comment: CNVKIT - unable to produce scatter and diagram pdfs
by
Anitha
• 0
Thank you for the information.
Comment: LncRNA Nomenclature
by
jain72744
▴ 10
My data is based on gene counts and the respective gene IDs are given so I should work with ENSGs? lncRNA_transcripts <- getBM(attributes …
Answer: DESeq2 error
by
ATpoint
82k
At least one group needs replication. That is the short answer. For a longer answer add details on experimental design.
Comment: When should I use R-MarkDown over R-Script ?
by
ATpoint
82k
Why particular question? Rmarkdown is a composite of markdown and code. You can nicely separate free text, explanation, comments etc. from…
Comment: LncRNA Nomenclature
by
ATpoint
82k
RNA-seq is typically analyzed on gene rather than transcript level. Are your counts gene or transcript?
Comment: EdgeR - relationship between logFC and coefficients
by
gBioStar5
▴ 10
Thanks a lot, this was very helpful. I'll keep that in mind.
Answer: EdgeR - relationship between logFC and coefficients
by
Gordon Smyth
★ 7.1k
Results presented by topTags() are on the log2 scale. Coefficients stored internally in the DGELRT object are on the loge scale. If you con…
Answer: Importing a fastq file
by
size_t
▴ 120
run command `explorer.exe .` in wsl terminal, and then drag file to folder
Traffic: 2252 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6