Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : all time
all time
today
this week
this month
this year
1,000 results • Page
3 of 20
Sort: replies
Rank
Views
Votes
Replies
161
votes
22
replies
18k
views
19 follow
Forum:
Advice For Newcomers To The Bioinformatics Field
advice
career
updated 18 months ago by
Ram
43k • written 10.8 years ago by
Medhat
9.7k
20
votes
22
replies
13k
views
11 follow
Forum:
Nextseq for analysts
basespace
casava
bcl2fastq
nextseq
updated 14 months ago by
Ram
43k • written 9.9 years ago by
Madelaine Gogol
5.3k
29
votes
21
replies
6.3k
views
Forum:
PhD vs Field application scientist in industry
career
updated 13 months ago by
Ram
43k • written 7.7 years ago by
Govi988
▴ 80
81
votes
21
replies
5.1k
views
16 follow
Forum:
[UPDATE] Thrown into a Bioinformatics Position
bioinformatics
updated 13 months ago by
Ram
43k • written 7.9 years ago by
Sinji
★ 3.2k
67
votes
21
replies
6.1k
views
8 follow
Forum:
Meta: Markdown in Biostars (now enabled)
meta
13 months ago by
Ram
43k
99
votes
21
replies
9.0k
views
14 follow
Forum:
How Has Bioinformatics Improved Over Time?
bioinformatics
updated 14 months ago by
Ram
43k • written 11.3 years ago by
Kate
▴ 370
66
votes
21
replies
6.8k
views
18 follow
Forum:
Is there anyone who was a pure biologist?
next-gen
updated 14 months ago by
Ram
43k • written 10.0 years ago by
Chong Tang
▴ 100
36
votes
21
replies
19k
views
9 follow
Forum:
What Is Your Favorite Conserved Protein?
protein
conservation
updated 14 months ago by
Ram
43k • written 10.7 years ago by
Mary
11k
17
votes
21
replies
3.5k
views
8 follow
Forum:
bioinformatics thesis
thesis
updated 3.0 years ago by
Joe
21k • written 3.1 years ago by
eridanus
▴ 40
27
votes
21
replies
9.3k
views
9 follow
Forum:
Better for my career: Degree in computer science or Phd in bioinformatics?
computer-science
phd
updated 13 months ago by
Ram
43k • written 7.6 years ago by
BioinfGuru
★ 1.7k
35
votes
21
replies
3.1k
views
11 follow
Forum:
Should you restrict use of your software based on your political views?
software
updated 20 months ago by
Ram
43k • written 8.6 years ago by
Jean-Karim Heriche
27k
20
votes
21
replies
2.9k
views
6 follow
Forum:
Next Gen seq for Job interview
next-gen
updated 13 months ago by
Ram
43k • written 9.2 years ago by
gauravsingh.singh86
▴ 20
42
votes
21
replies
15k
views
10 follow
Forum:
A Database Of Signatures Of Selection In The 1000 Genomes Dataset
1000genomes
human
selection
updated 14 months ago by
Ram
43k • written 10.2 years ago by
Giovanni M Dall'Olio
28k
39
votes
21
replies
14k
views
10 follow
Forum:
Orientation of PE reads a review of --fr --ff and --rf meanings
RNA-Seq
updated 11 months ago by
Ram
43k • written 5.5 years ago by
Juke34
8.6k
91
votes
20
replies
20k
views
15 follow
Forum:
Publications for individualized medicine in cancer by whole genome, exome or transcriptome sequencing
N-of-one
WGS
RNA-Seq
next-gen
Exome
updated 19 months ago by
Ram
43k • written 10.0 years ago by
Obi Griffith
20k
50
votes
20
replies
6.0k
views
18 follow
Forum:
Explain bioinformatics to a 10 year old
bioinformatics
updated 14 months ago by
Ram
43k • written 8.2 years ago by
novice
★ 1.1k
42
votes
20
replies
3.4k
views
11 follow
Forum:
What are the most popular NGS tools?
ensembl
NGS
updated 13 months ago by
Ram
43k • written 8.1 years ago by
Emily
23k
49
votes
20
replies
2.1k
views
10 follow
Forum:
First experiences matter
first-time
tolerance
updated 3 months ago by
Michael Love
★ 2.6k • written 4 months ago by
Mensur Dlakic
★ 27k
7
votes
20
replies
2.1k
views
Forum:
NGS RNA-Seq Analysis Pipeline Tophat vs STAR
STAR
RNA-Seq
TopHat
updated 11 months ago by
Ram
43k • written 3.3 years ago by
mikefeixu
▴ 10
12
votes
20
replies
3.3k
views
Forum:
Starting a career in Bioinformatics
career
updated 13 months ago by
Ram
43k • written 7.9 years ago by
rupashree.choudhury
▴ 10
38
votes
19
replies
10k
views
10 follow
Forum:
Kallisto New RNA-seq quantification method discussion
RNA-Seq
updated 13 months ago by
Ram
43k • written 8.1 years ago by
morovatunc
▴ 550
49
votes
19
replies
7.3k
views
13 follow
Forum:
Why Are There No Proteomics Questions In Biostar?
proteomics
biostars
updated 14 months ago by
Ram
43k • written 13.5 years ago by
Jdnavarro
▴ 410
47
votes
19
replies
14k
views
10 follow
Forum:
Is Software Development a key part of Bioinformatics?
Software-Development
updated 20 months ago by
Ram
43k • written 9.3 years ago by
xinuke
▴ 70
27
votes
19
replies
4.6k
views
10 follow
Forum:
Google genomics cloud platform ?
genome
cloud
updated 13 months ago by
Ram
43k • written 8.9 years ago by
GouthamAtla
12k
9
votes
19
replies
8.6k
views
Forum:
Careful!! Velvet Generates Different Assemblies From The Same Input Data And Same Input Parameters With Openmp Enabled.
velvet
genome
updated 14 months ago by
Ram
43k • written 10.5 years ago by
Rahul Sharma
▴ 660
35
votes
19
replies
3.8k
views
6 follow
Forum:
For the general public seeking advice from this community
diagnosis
rare-disease
updated 20 months ago by
Ram
43k • written 8.6 years ago by
Mary
11k
35
votes
19
replies
4.0k
views
Forum:
Crowd Sourcing The 'Analysis' Of The 'Big Foot' Genome
bigfoot
genome
updated 14 months ago by
Ram
43k • written 11.2 years ago by
Will
4.5k
57
votes
19
replies
28k
views
6 follow
Forum:
Attention: Bowtie2 And Multiple Hits
next-gen
bowtie
mapping
updated 14 months ago by
Ram
43k • written 11.5 years ago by
David Langenberger
11k
56
votes
19
replies
4.1k
views
9 follow
Forum:
How to apply for a job
resume
cover-letter
application
CV
updated 11 months ago by
Ram
43k • written 6.8 years ago by
Emily
23k
45
votes
19
replies
2.9k
views
9 follow
Forum:
Where and how NGS techniques are heading for the next 5 years?
next-gen
NGS
updated 11 months ago by
Ram
43k • written 6.9 years ago by
lakhujanivijay
5.8k
30
votes
19
replies
10k
views
6 follow
Forum:
Programming language use distribution from recent programs / articles
programming-language
programs
updated 11 months ago by
Ram
43k • written 7.0 years ago by
Eric Normandeau
11k
50
votes
19
replies
4.9k
views
7 follow
Forum:
Proposal: Biostar Wants To Run Your Ads. Feedback Requested.
biostars
updated 14 months ago by
Ram
43k • written 11.2 years ago by
Istvan Albert
100k
34
votes
19
replies
7.9k
views
12 follow
Forum:
Programming Language In Bioinformatics
perl
python
updated 14 months ago by
Ram
43k • written 11.0 years ago by
AndreiR
▴ 260
70
votes
19
replies
5.6k
views
13 follow
Forum:
Thrown Into A Bioinformatics Position
computational-analysis
updated 22 months ago by
Ram
43k • written 8.6 years ago by
System
▴ 170
36
votes
18
replies
8.2k
views
Forum:
How Does Genomebrowse Free Genome Browser From Golden Helix Compare?
visualization
genome-browser
updated 3.1 years ago by
natay
20 • written 11.1 years ago by
Victor Lyuboslavsky
▴ 140
72
votes
18
replies
7.5k
views
17 follow
Forum:
What Is One Book Every Bioinformatician Should Read?
books
updated 14 months ago by
Ram
43k • written 10.9 years ago by
Philipp Bayer
8.4k
13
votes
18
replies
3.2k
views
6 follow
Forum:
Bioinformatics independent study group
Proteomic
RNA-Seq
Genomic
updated 11 months ago by
Ram
43k • written 6.7 years ago by
Leite
★ 1.3k
23
votes
18
replies
2.6k
views
9 follow
Forum:
How to imagine the future of bioinformatics?
bioinformatics
updated 13 months ago by
Ram
43k • written 7.6 years ago by
biotech
▴ 570
21
votes
18
replies
1.8k
views
Forum:
Is it safe to keep our data in github
github
updated 11 months ago by
Ram
43k • written 4.0 years ago by
rprog008
▴ 70
29
votes
18
replies
2.7k
views
12 follow
Forum:
what are the big questions in bioinformatics field nowadays
genome
updated 11 months ago by
Ram
43k • written 4.2 years ago by
t4192
▴ 20
23
votes
18
replies
1.5k
views
Forum:
Versioning of Blast DB and Reproducible Research
database
blast
reproducible-research
updated 11 months ago by
Ram
43k • written 4.0 years ago by
makrez
▴ 60
52
votes
18
replies
6.3k
views
14 follow
Forum:
Do You Feel Good Or Bad About Putting Your Photo At Biostar?
meta
biostars
updated 14 months ago by
Ram
43k • written 10.6 years ago by
ugly.betty77
★ 1.1k
29
votes
18
replies
3.3k
views
7 follow
Forum:
Should I quit PhD program?
education
career
research
phd
updated 11 months ago by
Ram
43k • written 6.0 years ago by
George
▴ 30
38
votes
18
replies
4.2k
views
11 follow
Forum:
Should We Have A Biostar Conference Or Meeting?
conference
biostars
updated 14 months ago by
Ram
43k • written 10.9 years ago by
Michael
54k
33
votes
17
replies
3.5k
views
7 follow
Forum:
What bioinformatics tools/software do not get enough recognition?
software
updated 14 months ago by
Ram
43k • written 9.5 years ago by
brentp
24k
17
votes
17
replies
2.0k
views
6 follow
Forum:
Journal for beginners
journal
updated 11 months ago by
Ram
43k • written 6.1 years ago by
heref
▴ 20
38
votes
17
replies
3.2k
views
7 follow
Forum:
Why does bioinformatics use a special format like a BAM file instead of a database like SQLite?
sam
bam
samtools
updated 10 months ago by
Ram
43k • written 3.7 years ago by
kojix2
▴ 250
9
votes
17
replies
3.0k
views
Forum:
“Systematic pattern of excess success"
paper
statistics
updated 13 months ago by
Ram
43k • written 9.4 years ago by
mikhail.shugay
3.5k
13
votes
17
replies
4.9k
views
8 follow
Forum:
A Universal/Common Biorep System
reputation
updated 14 months ago by
Ram
43k • written 10.4 years ago by
Obi Griffith
20k
27
votes
17
replies
5.1k
views
Forum:
Data sharing via Bittorrent is coming to Biostar
biostars
bittorrent
updated 14 months ago by
Ram
43k • written 9.8 years ago by
Istvan Albert
100k
1,000 results • Page
3 of 20
Recent Votes
Comment: Raw counts using stringtie
Comment: Raw counts using stringtie
Answer: GRCh38.gmap file
Comment: GRCh38.gmap file
Answer: GRCh38.gmap file
Answer: GRCh38.gmap file
Answer: Design matrix Differential expression analysis
Recent Locations •
All
New Zealand,
just now
China,
3 minutes ago
India,
4 minutes ago
Italy,
5 minutes ago
Türkiye,
11 minutes ago
United Kingdom,
12 minutes ago
Ramat Gan,
16 minutes ago
Recent Awards •
All
Popular Question
to
Assa Yeroslaviz
★ 1.8k
Popular Question
to
Yoosef
▴ 60
Popular Question
to
Zhenyu Zhang
★ 1.2k
Popular Question
to
psm
▴ 130
Popular Question
to
Medhat
9.7k
Autobiographer
to
Mathew
▴ 30
Commentator
to
dsull
★ 6.0k
Recent Replies
Comment: The GDC Legacy Archive is retiring soon.
by
Zhenyu Zhang
★ 1.2k
If you are talking about methylation idat files, they were all migrated from legacy to the data portal. If you are talking about other pl…
Comment: How to access TCGA samples that were treated with a specific drug?
by
Zhenyu Zhang
★ 1.2k
These TCGA samples were taken 10 ~ 20 years ago, and there is no way they have been treated by the modern immunotherapy. Are you sure tha…
Comment: Design matrix Differential expression analysis
by
Gordon Smyth
★ 7.1k
> When is it recommended to use the design <- cbind(Intercept=1,Group=c(-1,-1,-1,1,1,1)) It is not recommended. No such code appears anywh…
Comment: GRCh38.gmap file
by
lorena9132
▴ 10
Hi Mathew, The .txt files provided in the link differ from the .gmap files, but after several attempts, I succeeded in generating the .gma…
Answer: GRCh38.gmap file
by
Mathew
▴ 30
Hi, I have spent some time searching for a GRCH38 map file for you. I have found a certain publication that uses a hg38 genetic map file…
Answer: Association study using SNP data
by
Mathew
▴ 30
Hi, You asked three questions so I will attempt to help the best I can **What should be the optimal GC score cutoff** It sounds li…
Comment: Design matrix Differential expression analysis
by
SHN
▴ 40
Thank you for your explanation. I am working on the cell lines and I am investigating the effect of the treatment on the expression level, …
Answer: Issues with Mixture file when using CIBERSORTx
by
vjanve
• 0
I ran into same issue of "duplicated gene symbol(s)": 1: In CIBERSORTxFractions(sigmatrix = sigmatrix, mixture = mixture, : 22292 dup…
Comment: creating batch colum for batch correction
by
Expert
▴ 10
Thank you for your response. These samples were collected from the same patient at different time points(day 0, 8 and 18) and these are ind…
Comment: creating batch colum for batch correction
by
ATpoint
82k
Not sure I follow. Can you first of all describe which comparisons you want to make, pretending there was no batch effect at all. Write dow…
Comment: Pindel Segmentation Fault Error
by
Ruqaiya
• 0
This the tool still problematic?
Comment: Segmentation error while using a tool
by
Ruqaiya
• 0
Thank you for the advice, i'll keep that in mind.
Comment: Segmentation error while using a tool
by
Ruqaiya
• 0
I am trying to reproduce some bioinformatics data from a research paper-[this paper][1] as i was asked to work on an MRSA bioinfo project, …
Answer: Segmentation error while using a tool
by
Mensur Dlakic
★ 27k
Most likely you didn't do anything wrong. Going by your previous post that you have only 8 GB of RAM, the most likely reason is the lack of…
Comment: Segmentation error while using a tool
by
Thanujay S
• 0
Hey @Ruqaiya! Can you please give more details on why smalt is opted here? According to what I can see, the tool has become obsolete! Why …
Traffic: 1332 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6