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356 results • Page 5 of 8
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Forum: [Detailed Question] How to Normalize of Metagenomics Gene Abundances (with HMMs models)
normalization
updated 11 months ago by 10k • written 11 months ago by • 0
16
votes
7
replies
1.3k
views
Forum: What counts as "complex code"?
career
updated 12 months ago by 43k • written 5.7 years ago by ▴ 30
0
votes
2
replies
1.3k
views
Forum: What should I choose between a thesis and a project for masters in bioinformatics?
thesis project
updated 11 months ago by 43k • written 4.8 years ago by ▴ 70
5
votes
2
replies
1.3k
views
Forum: ISMB bioinfo-core workshop call for lightning talks
conferences
updated 11 months ago by 43k • written 5.1 years ago by 5.3k
2
votes
4
replies
1.3k
views
Forum: Transitioning from Wet Lab to Computational Biology as a PhD Student/Surgeon
RNA-Seq sequencing
updated 11 months ago by 43k • written 4.1 years ago by ▴ 10
13
votes
4
replies
1.3k
views
Forum: The shortcoming of shiny app in building webserver
R shiny webserver
updated 11 months ago by 43k • written 4.7 years ago by ▴ 120
2
votes
10
replies
1.3k
views
Forum: AddHealth Omics Data Source
AddHealthOmics
updated 12 months ago by 43k • written 5.5 years ago by • 0
13
votes
6
replies
1.3k
views
Forum: To Cloud or Not to Cloud - Privacy implications of genetic data sharing
security diagnostics DNA-Seq
updated 11 months ago by 43k • written 4.9 years ago by 11k
0
votes
3
replies
1.3k
views
Forum: Help cry of a M.Sc. student, who is seeking a path in Bioinformatics
PhD
updated 12 months ago by 43k • written 5.5 years ago by ▴ 50
19
votes
7
replies
1.3k
views
9 follow
Forum: DNA in pixels
genome alignment sequencing
updated 11 months ago by 43k • written 3.5 years ago by ▴ 30
3
votes
2
replies
1.2k
views
Forum: Preferred cloud environment for genomics.
next-gen-sequencing RNA-Seq alignment
updated 11 months ago by 43k • written 3.8 years ago by ▴ 10
4
votes
3
replies
1.2k
views
Forum: TACC vs SDSC vs HTCondor
PBS
updated 12 months ago by 43k • written 5.8 years ago by ★ 9.4k
2
votes
6
replies
1.2k
views
Forum: Would love to hear from you re: which bionformatics resources could use an improvement in their interface.
seq database gene prot
updated 11 months ago by 43k • written 4.1 years ago by • 0
2
votes
9
replies
1.2k
views
Forum: open source projects looking for contributors
open-source
updated 8 months ago by ▴ 70 • written 8 months ago by ▴ 20
2
votes
7
replies
1.2k
views
Forum: Future prospects: NGS vs Gene editing (using CRISPR CAS9, AAVs and similar methods)
NGS CRISPR-Cas9
updated 11 months ago by 43k • written 4.6 years ago by ▴ 170
0
votes
0
replies
1.2k
views
Forum: Clustering proteins by Pfam annotation
Clustering Pfam
updated 12 months ago by 43k • written 6.0 years ago by ▴ 110
4
votes
4
replies
1.2k
views
Forum: What skills are required for an informatics scientist?
informatics scientist
updated 11 months ago by 43k • written 5.0 years ago by ★ 9.4k
1
vote
0
replies
1.2k
views
Forum: Immune Repertoire Analysis Survey
immunoinformatics R
updated 12 months ago by 43k • written 5.8 years ago by ▴ 90
5
votes
4
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1.2k
views
Forum: Consider CodeOcean or other solutions for runnable Biostars answers?
CodeOcean how-to meta
updated 11 months ago by 43k • written 4.0 years ago by 22k
0
votes
2
replies
1.2k
views
Forum: Welcome to join our Wechat group for Bioinformatics!
single-cell ChIP-Seq genome algorithm RNA-Seq
updated 11 months ago by 43k • written 3.7 years ago by ▴ 160
19
votes
5
replies
1.2k
views
6 follow
Forum: What Are The Most Influential Bioinformatics/Computational Biology Papers Of 2023?
genomics snps survey papers
5 months ago by Raony Guimarães ★ 1.4k
2
votes
4
replies
1.2k
views
Forum: Biostars: other categories required ?
epigenomics long_reads mapping
updated 12 months ago by 43k • written 6.0 years ago by 6.4k
0
votes
0
replies
1.2k
views
Forum: Interest in joining a bioinformatics project
project
updated 11 months ago by 43k • written 5.3 years ago by ▴ 10
4
votes
3
replies
1.2k
views
Forum: Cannot vote in mobil version
meta
updated 12 months ago by 43k • written 6.2 years ago by 16k
16
votes
10
replies
1.2k
views
6 follow
Forum: F*up Night style events for Bioinformatics ? Comment if you're interested!
mistakes
updated 7 weeks ago by 5.3k • written 7 weeks ago by ★ 2.4k
4
votes
0
replies
1.2k
views
Forum: Plotting Ensembl gene name changes between versions
R ensembl
updated 11 months ago by 43k • written 4.8 years ago by ▴ 600
1
vote
3
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1.2k
views
Forum: R-programming: individual lessons or Institutes where to learn and practice in Germany
R biologist
updated 12 months ago by 43k • written 5.5 years ago by ▴ 10
33
votes
12
replies
1.2k
views
7 follow
Forum: Nextflow and self-made pipelines opinion
nextflow pipeline data-analysis
11 weeks ago by karlaarz ▴ 110
2
votes
2
replies
1.2k
views
Forum: Freshman puzzled by tons of statistic methods
ML biostatistics statistics
updated 12 months ago by 43k • written 5.6 years ago by ▴ 30
1
vote
2
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1.2k
views
Forum: Metagenomics Tutoring Opportunity
metagenomics microbial tutoring
updated 12 months ago by 43k • written 5.4 years ago by ▴ 30
0
votes
0
replies
1.1k
views
Forum: ssDNA Aptamer structure prediction
aptamer selex
updated 11 months ago by 43k • written 4.0 years ago by • 0
0
votes
2
replies
1.1k
views
Forum: Will de novo protein structure prediction research become irrelevant?
protein-structure-prediction
updated 12 months ago by 43k • written 5.4 years ago by ▴ 110
1
vote
3
replies
1.1k
views
Forum: unable to login via github
meta
updated 12 months ago by 43k • written 6.2 years ago by ▴ 160
4
votes
5
replies
1.1k
views
Forum: A silly question about journal clubs
journal-club challenge
updated 11 months ago by 43k • written 4.2 years ago by ▴ 280
7
votes
4
replies
1.1k
views
Forum: [Meta] Use of AI
AI Artificial-Intelligence meta ChatGPT
updated 11 months ago by 43k • written 11 months ago by 4.2k
0
votes
1
reply
1.1k
views
Forum: Tutor Wanted: Help With Gene Expression Analysis Using Bioconductor
Gene-Expression Microarray Bioconductor
updated 12 months ago by 43k • written 6.2 years ago by • 0
7
votes
9
replies
1.1k
views
Forum: DEG analysis when not replicates are available
NOISeq RNA-Seq edgeR
updated 11 months ago by 43k • written 4.1 years ago by ★ 5.1k
3
votes
2
replies
1.1k
views
Forum: Which is the best tutorial site to learn practical approaches on NGS?
next-gen-sequencing R
updated 11 months ago by 43k • written 5.3 years ago by ▴ 20
5
votes
6
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1.1k
views
Forum: COVID19 testing - can we/should we use NGS?
NGS covid19 diagnostics
updated 11 months ago by 43k • written 4.2 years ago by ★ 1.4k
3
votes
3
replies
1.1k
views
Forum: Large Multi-omics Project -- Dev Approach
snp RNA-Seq sequencing
updated 11 months ago by 43k • written 4.7 years ago by ▴ 10
6
votes
5
replies
1.1k
views
Forum: A free temporary HPC service for bioinformatic analysis
HPC
updated 11 months ago by 43k • written 4.2 years ago by ▴ 340
0
votes
5
replies
1.1k
views
Forum: Advice for a start in Bioinformatics
R next-gen Python
updated 11 months ago by 43k • written 4.0 years ago by • 0
4
votes
4
replies
1.1k
views
Forum: Kubernetes in Production?
ci-cd webservice kubernetes docker
updated 11 months ago by 43k • written 4.4 years ago by • 0
2
votes
3
replies
1.1k
views
Forum: Feedback on Read Alignment Programs
alignment
updated 11 months ago by 43k • written 5.3 years ago by • 0
3
votes
0
replies
1.1k
views
Forum: Good books on application of Machine Learning in Bioinformatics
book machine-learning
updated 11 months ago by 43k • written 4.8 years ago by ▴ 180
2
votes
0
replies
1.1k
views
Forum: How to Fairly Represent and Interpret Direct-To-Consumer Ancestry Results?
Ancestry chromosome-painting ADMIXTURE
updated 11 months ago by 43k • written 4.3 years ago by 8.2k
1
vote
1
reply
1.1k
views
Forum: Companies and salary for a PhD in Drug Design in Asia
salary drug-design
updated 11 months ago by 43k • written 4.9 years ago by • 0
17
votes
11
replies
1.1k
views
Forum: How to overcome the imposter syndrome in bioinformatics?
advice
3 months ago by sil_bioinfo ▴ 40
7
votes
2
replies
1.1k
views
Forum: Include github code in posts
github meta
updated 12 months ago by 43k • written 6.0 years ago by 16k
3
votes
5
replies
1.1k
views
Forum: Current Trends in Bioinformatics
structural-bioinformatics
updated 5 months ago by 43k • written 6 months ago by • 0
356 results • Page 5 of 8
Recent Votes
The Biostar Herald for Monday, May 20, 2024
Answer: Generating Group/Cluster Lists from fastq files
The Biostar Herald for Monday, May 20, 2024
ClusterProfiler : What is GeneRatio and BgRatio?
A: ClusterProfiler : What is GeneRatio and BgRatio?
A: ClusterProfiler : What is GeneRatio and BgRatio?
C: Cleaning RNA-Seq data from rRNA
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Popular Question to tothepoint ▴ 800
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Recent Replies
Comment: What marks a De-Novo Genome assembly as FAILED? by dthorbur ★ 2.0k
I'm unsure you'll be able to identify whole chromosomes that are not core from illumina reads alone. That might be easier to do with a micr…
Answer: Error in using BioSampleParser tool: subscript out of bounds by Mohamed Samir ▴ 20
Dear marco, We need to ask ourselves why it is not working for all bioprojects ? I have looked into this, and observed that as long as the…
Comment: Why most genes have high padj values by Ram 43k
You ***want*** ~3000 DE genes?<a href="" title="Text added because biostars parser needs it"></a>
Answer: Generating Group/Cluster Lists from fastq files by GenoMax 142k
> I was hoping to just do this in galaxy This is not a galaxy option but `clumpify.sh ` from BBMap suite can cluster sequences/dedupe th…
Comment: Practical Haplotype Graph v2 not finding correct paths by beantkapoor16 ▴ 10
Hello, just wanted to check in if the code has been fixed yet? Thank you.
Comment: Super ehancers by jared.andrews07 ★ 16k
Based on the [source code](https://bitbucket.org/young_computation/rose/src/feb35cb1d9556a76f8ac1f51521539bb30651343/ROSE_utils.py?at=maste…
Comment: HGVS Nomenclature of Multiple Indels found in Cis by Ram 43k
They're not addressing the actual question, just saying something tangentially related. It looks like their understanding of both consensus…
Comment: Super ehancers by Oburah • 0
Hello, i encountered this problem when running ROSE, Do anyone know how to solve it? python2.7 ROSE_main.py -g HG38 -i /home/hesborn/…
Answer: How to generate an Upset plot in R to plot the shared variants between cell free by zx8754 11k
Try this example: library(UpSetR) #example input, 4 samples, 250 variants set.seed(1); d <- data.frame(matrix(sample…
Answer: Illumina methylation EPIC V2 array by fu_entomology ▴ 40
We have been using SeSAMe, it works well for the most part. They have an enrichment tool called KnowYourCG. You can check it out their vign…
Answer: How to find identical sequences in genome fasta file (by Python or any possible by GenoMax 142k
> My final purpose are find and remove any identical sequences present in my genome fasta file. You can use `clumpify.sh` from BBMap suite…
Comment: GO analysis: Indicate genes corresponding to the pathway by marco.barr ▴ 130
I think you have set a filter to get these pahways upstream from the DEG results. You should extract the IDs or names of the genes that you…
Comment: GATK Structural Variants Pipeline - Steps by Bioinformatics_begginner ▴ 20
Thank you for the response, I mean those tools aren't all the steps from fasta to vcf. Would be key understanding the aligner, reference us…
Comment: seqtk subseq in.fastq list.txt > out.fastq not extracting full sequence from by GenoMax 142k
Please accept the answer (green check mark) to provide closure to this thread.
Answer: GATK Structural Variants Pipeline - Steps by Pierre Lindenbaum 161k
> A structural variation pipeline for short-read sequencing https://github.com/broadinstitute/gatk-sv
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