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1,000 results • Page
3 of 20
Sort: replies
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Views
Votes
Replies
0
votes
8
replies
306
views
Error in cnetplot enrichplot package
R
updated 3 days ago by
Ram
43k • written 3 days ago by
Farhad
• 0
1
vote
8
replies
682
views
6 follow
Finding insert sequences using long reads
insert-sequences
Nanopore
long-read-assembly
updated 16 days ago by
Anand Rao
▴ 630 • written 7 weeks ago by
bvm
▴ 20
9
votes
8
replies
5.6k
views
7 follow
CONTRA for CNV detection. troubleshooting
genome
next-gen-sequencing
cnv
software-error
updated 28 days ago by
Ram
43k • written 9.9 years ago by
Kizuna
▴ 870
3
votes
8
replies
4.1k
views
Using FPKM and TPM values for batch correction for Single Cell RNA-Seq
fpkm
scRNA-seq
RNA-Seq
tpm
batch-effect
updated 7 days ago by
Ram
43k • written 4.6 years ago by
hkarakurt
▴ 180
5
votes
8
replies
3.7k
views
Many Differentially expressed genes but few GO terms
differential-gene-expression
RNA-seq
gene-ontology
updated 16 days ago by
Ram
43k • written 6.5 years ago by
firestar
★ 1.6k
6
votes
8
replies
2.1k
views
Simple explanation and usage of WGCNA package?
wgcna
RNA-Seq
ChIP-Seq
updated 18 days ago by
mflab
• 0 • written 3.9 years ago by
m.sadman.sakib
▴ 120
1
vote
8
replies
3.3k
views
cutadapt error problem
next-gen
cutadapt
updated 28 days ago by
Ram
43k • written 5.6 years ago by
amitpande74
▴ 20
1
vote
8
replies
3.4k
views
Best way to address different batches of RNA-seq
sequence
RNA-Seq
RPKM
Fold-Change
batch-effect
updated 8 days ago by
Ram
43k • written 7.0 years ago by
tud55122
▴ 20
7
votes
7
replies
5.9k
views
6 follow
How to know synonymous and non-synonymous SNPs from transcriptome sequencing
RNA-Seq
SNP
updated 18 hours ago by
rohitsatyam102
▴ 850 • written 6.1 years ago by
smallfish
▴ 10
10
votes
7
replies
7.1k
views
6 follow
Convert GVF to VCF
vcf
updated 10 days ago by
george-hall-ucl
• 0 • written 9.2 years ago by
win
▴ 970
4
votes
7
replies
4.5k
views
snakemake output directory
snakemake
ngs
updated 10 days ago by
进
• 0 • written 3.9 years ago by
Peter Chung
▴ 200
7
votes
7
replies
550
views
Can you suggest a protein PDB that has two chainst but only 50 total number of atoms?
protein
pdb
protein-databank
updated 13 days ago by
Matthias Zepper
4.5k • written 13 days ago by
4fzcgueyp5
• 0
1
vote
7
replies
5.1k
views
How do I plot several sns.clustermap heatmaps in a single figure?
python
seaborn
updated 15 days ago by
Wubin
▴ 40 • written 3.4 years ago by
roy.granit
▴ 880
2
votes
7
replies
5.2k
views
6 follow
Memory usage of picard Samsort
Picard
SortSam
updated 6 days ago by
ATpoint
82k • written 7.2 years ago by
boymin2020
▴ 80
4
votes
7
replies
591
views
UK biobank versus Genomics England
WGS
DRAGEN
GenomicsEngland
UK-BRAP
vcf
written 12 weeks ago by
zizigolu
★ 4.3k
4
votes
7
replies
2.4k
views
Batch effects vs biological variables
Batch-effect
DESeq2
combat_seq
updated 17 days ago by
Ram
43k • written 3.7 years ago by
l.uva
▴ 20
3
votes
7
replies
458
views
Integration of transcriptomics and proteomics: difficult matching names
rna-seq
tmt
nomenclature
proteomics
9 days ago by
ntsopoul
▴ 60
0
votes
7
replies
6.0k
views
Pre-processing of RNA-Seq data for WGCNA
RNA-Seq
WGCNA
removeBatchEffect
DESeq2
updated 9 days ago by
Ram
43k • written 7.6 years ago by
gokce.ouz
▴ 70
5
votes
7
replies
2.7k
views
DESeq2 for differential gene expression on GTEx dataset
differential-gene-expression
RNA-Seq
GTex
DESeq2
updated 16 days ago by
Ram
43k • written 6.4 years ago by
vikram
▴ 10
7
votes
7
replies
1.1k
views
Forum:
Bioinformatician who was retaliated against after reporting discriminatory harassment - Please help me navigate getting out of the situation I'm in
Career
advice
updated 10 days ago by
Dunois
★ 2.5k • written 11 days ago by
AdviceSeeker
• 0
3
votes
7
replies
961
views
How much adapters is it ok to keep in my samples after RNA seq?
RNA-seq
illumina
adapters
updated 21 days ago by
Ram
43k • written 5 months ago by
bioinfo
▴ 150
4
votes
7
replies
550
views
DESeq2 Multifactor Design
RNA-seq
DESeq2
updated 12 days ago by
Ram
43k • written 13 days ago by
AHerik
▴ 20
3
votes
7
replies
518
views
Artificial deletion in bam
bam
updated 20 days ago by
Zhenyu Zhang
★ 1.2k • written 21 days ago by
enee
▴ 10
1
vote
7
replies
15k
views
7 follow
How To Annotate Methylation 450K?
methylation
updated 21 days ago by
Vassilis
• 0 • written 10.1 years ago by
liu4gre
▴ 210
0
votes
7
replies
648
views
Help with summarizeOverlaps function in RNASeq analysis using R
R
RNA-Seq
summarizeOverlaps
GenomicAlignments
updated 18 days ago by
BioinfGuru
★ 1.7k • written 27 days ago by
FJCF
• 0
0
votes
7
replies
399
views
DESeq: too low p-value for RNAseq
R
DESeq
p-value
RNA-seq
FDR
updated 21 days ago by
Papyrus
★ 2.9k • written 22 days ago by
doramora
▴ 10
0
votes
7
replies
1.9k
views
Batch effect correction in RNASeq data and plot Dendrograms cluster
clustering
dendrogram
RNA-Seq
batch-effect
updated 7 days ago by
Ram
43k • written 4.0 years ago by
Ankit
▴ 500
0
votes
7
replies
416
views
Salmon Quantification in Alignment based-mode
Salmon
RNA-seq
TPM
updated 29 days ago by
GenoMax
141k • written 4 weeks ago by
Patadu94
• 0
0
votes
7
replies
476
views
Selection criteria for nanobody
Nanobody
updated 24 days ago by
LChart
3.9k • written 25 days ago by
farahnazir2
• 0
4
votes
7
replies
560
views
Can any JBrowse2 tracks show multiple colors for reads at different nucleotide positions?
JBrowse
JBrowse2
updated 24 days ago by
cmdcolin
★ 3.8k • written 27 days ago by
I0110
▴ 140
1
vote
7
replies
433
views
fastp - can I trim specific adapters only?
trimming
fastp
adapter
14 days ago by
liorglic
★ 1.4k
1
vote
7
replies
464
views
Installing Cell Ranger
cellranger
23 days ago by
gdfsnkfns
• 0
2
votes
7
replies
815
views
Removing duplicates
duplicates
ONT
minimap2
updated 7 days ago by
joe
▴ 510 • written 9 days ago by
quentinperriere
• 0
2
votes
7
replies
5.7k
views
8 follow
How to access specifically 30x NA12878 sequencing runs
giab
benchmark
fastq
wgs
data-access
updated 23 days ago by
geocarvalho
▴ 360 • written 5.1 years ago by
Fungsten
• 0
7
votes
7
replies
1.0k
views
Prediction tools summary - zero values
statistics
updated 9 days ago by
Дана
• 0 • written 6 months ago by
Lukas
▴ 50
4
votes
7
replies
411
views
To get p-values for the TPM
P-value
TPM
RSEM
updated 1 day ago by
dsull
★ 5.8k • written 2 days ago by
VITALA
• 0
2
votes
7
replies
509
views
STARsolo ; Reads are NOT mapped to transcriptome
STARsolo
updated 14 days ago by
GenoMax
141k • written 16 days ago by
gdfsnkfns
• 0
3
votes
7
replies
1.0k
views
Can I use batch effect correction "by parts"?
ComBat
RNA-Seq
batch-effect
updated 8 days ago by
Ram
43k • written 4.3 years ago by
n,n
▴ 360
6
votes
7
replies
1.6k
views
How to assess RNA-Seq batch correction success?
Combat
RNA-Seq
Limma
DESeq2
batch-effect
updated 7 days ago by
Ram
43k • written 4.9 years ago by
borkk
▴ 140
2
votes
7
replies
5.1k
views
9 follow
problem with HOMER findMotifsGenome.pl
HOMER
ATAC-Seq
updated 15 days ago by
kaaz
• 0 • written 5.5 years ago by
ste.lu
▴ 80
2
votes
6
replies
861
views
Batch effect correction with cell type enrichment analysis
limma
RNA-seq
r
batch-effect
updated 9 days ago by
Ram
43k • written 19 months ago by
JACKY
▴ 140
2
votes
6
replies
512
views
Correcting coordinates in gff3 file
awk
unix
gff3
python
updated 14 days ago by
Matthias Zepper
4.5k • written 15 days ago by
hulu
• 0
2
votes
6
replies
400
views
create a gene count matrix csv file from seurat object
Seurat
sparseMatrix
17 days ago by
jkim
▴ 170
0
votes
6
replies
548
views
PacBio adapters in transcriptome assembly from short read data?
adapter
transcriptome
sequencing
pacbio
vecscreen
10 days ago by
Dunois
★ 2.5k
10
votes
6
replies
9.8k
views
6 follow
CDS vs cDNA vs transcript for mapping RNA-Seq reads
Assembly
rna-seq
alignment
updated 1 hour ago by
Antonio R. Franco
★ 5.1k • written 6.0 years ago by
williamsbrian5064
▴ 510
9
votes
6
replies
1.5k
views
What in silico PCR commandline tool do you use that can handle IUPAC characters?
pcr
amplicon
primer
updated 23 days ago by
Ram
43k • written 16 months ago by
O.rka
▴ 710
2
votes
6
replies
571
views
Hybrid assembly Pacbio- Nanopore
long-reads
hybric
assembly
genome
short-reads
21 days ago by
Lissa Cruz Saavedra
• 0
7
votes
6
replies
463
views
Filtering sam or bam file with maximum matching region
crisper-edited
alignment
match
4 days ago by
analyst
▴ 30
5
votes
6
replies
7.3k
views
scatter plot, aov()
aov
scatter-plot
anova
updated 9 days ago by
Ram
43k • written 3.2 years ago by
Rob
▴ 170
1
vote
6
replies
2.1k
views
DGE on protein-coding and lncRNAs separately?
differential-gene-expression
RNA-seq
updated 16 days ago by
Ram
43k • written 6.5 years ago by
firestar
★ 1.6k
1,000 results • Page
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