Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : all time
all time
today
this week
this month
this year
1,000 results • Page
4 of 20
Sort: Votes
Rank
Views
Votes
Replies
33
votes
12
replies
1.1k
views
7 follow
Forum:
Nextflow and self-made pipelines opinion
nextflow
pipeline
data-analysis
11 weeks ago by
karlaarz
▴ 110
33
votes
17
replies
3.5k
views
7 follow
Forum:
What bioinformatics tools/software do not get enough recognition?
software
updated 14 months ago by
Ram
43k • written 9.6 years ago by
brentp
24k
33
votes
26
replies
3.6k
views
7 follow
Forum:
Poll: How many people have PyPy?
pypy
python
updated 13 months ago by
Ram
43k • written 8.2 years ago by
John
13k
32
votes
13
replies
11k
views
10 follow
Forum:
What Skills Do You Have To Have As A Phd Graduate In Bioinformatics?
genomics
phd
updated 15 months ago by
Ram
43k • written 11.8 years ago by
sentausa
▴ 650
32
votes
16
replies
12k
views
9 follow
Forum:
How to switch from bench research to computational biology?
career
updated 23 months ago by
Ram
43k • written 9.2 years ago by
yuggnurug
▴ 70
32
votes
5
replies
5.6k
views
Forum:
ipython notebooks on bioinformatics and genomics
python
updated 14 months ago by
Ram
43k • written 8.9 years ago by
Pappu
★ 2.1k
32
votes
14
replies
6.8k
views
9 follow
Forum:
Pat Schloss of Mothur uses this
uses-this
updated 14 months ago by
Ram
43k • written 9.5 years ago by
Istvan Albert
100k
32
votes
9
replies
5.9k
views
Forum:
Embrace The Non-Googlers Of Biostars
meta
biostars
updated 15 months ago by
Ram
43k • written 10.9 years ago by
KCC
★ 4.1k
31
votes
16
replies
2.2k
views
8 follow
Forum:
What is in your opinion the current state-of-the-art sequencing platform for genomic assembly (Nov 2019)
next-gen-sequencing
assembly
genome
updated 11 months ago by
Ram
43k • written 4.6 years ago by
Antonio R. Franco
★ 5.1k
31
votes
41
replies
2.8k
views
12 follow
Forum:
Question regarding journal publications
publications
journals
updated 11 months ago by
Ram
43k • written 4.2 years ago by
K.Gee
▴ 40
31
votes
4
replies
5.6k
views
8 follow
Forum:
What Are The Most Influential Bioinformatics/Computational Biology Papers Of 2016?
Assembly
sequencing
RNA-Seq
updated 13 months ago by
Ram
43k • written 7.4 years ago by
dago
★ 2.8k
31
votes
13
replies
16k
views
8 follow
Forum:
Should I Pursue A Bioinformatics Msc?
career
updated 15 months ago by
Ram
43k • written 11.3 years ago by
biostepho
▴ 70
31
votes
7
replies
6.0k
views
9 follow
Forum:
Beginner in Bioinformatics / computational biology field
Bioinformatics
Computational-biology
updated 13 months ago by
Ram
43k • written 7.9 years ago by
tanvi.phaltane
▴ 70
31
votes
8
replies
3.8k
views
6 follow
Forum:
Getting Things Done In Bioinformatics (More I Know, Less I Do?)
literature
analysis
updated 14 months ago by
Ram
43k • written 10.6 years ago by
Biomonika (Noolean)
3.2k
31
votes
34
replies
7.5k
views
11 follow
Forum:
pros- and cons- : programming skills vs. GUI
programming
lecture
updated 13 months ago by
Ram
43k • written 8.5 years ago by
TriS
★ 4.7k
30
votes
19
replies
10k
views
6 follow
Forum:
Programming language use distribution from recent programs / articles
programming-language
programs
updated 12 months ago by
Ram
43k • written 7.0 years ago by
Eric Normandeau
11k
30
votes
5
replies
4.1k
views
Forum:
I'm applying for a non-PhD bioinformatics position in your lab. What do you look for?
sequencing
updated 2.5 years ago by
Ram
43k • written 9.9 years ago by
scical
▴ 100
30
votes
31
replies
3.8k
views
11 follow
Forum:
I need your help to find my future
internship
masters
career
updated 13 months ago by
Ram
43k • written 7.8 years ago by
Baptiste
▴ 90
30
votes
27
replies
2.6k
views
11 follow
Forum:
How do you spend your time (productively) when your script is running?
time-management
updated 13 months ago by
Ram
43k • written 7.3 years ago by
venu
7.1k
30
votes
13
replies
3.8k
views
11 follow
Forum:
what is your daily must see bioinformatics web site?
learn
technology
updated 11 months ago by
Ram
43k • written 9.7 years ago by
Medhat
9.7k
30
votes
16
replies
2.3k
views
9 follow
Forum:
Which programming langauge shall I start as a beginner in Bioinformatics
programming-language
single-cell
updated 11 months ago by
Ram
43k • written 4.1 years ago by
nkg.bb
• 0
29
votes
13
replies
3.7k
views
6 follow
Forum:
Map of bioinformatics or who is bioinformatician.
self-study
updated 13 months ago by
Ram
43k • written 7.5 years ago by
dshulgin
▴ 260
29
votes
16
replies
3.2k
views
Forum:
Making bioinformatics help and tutorials open
ensembl
updated 14 months ago by
Ram
43k • written 9.8 years ago by
Emily
23k
29
votes
10
replies
9.3k
views
Forum:
Principles of Tidy Data (Hadley Wickham) and the VCF format
vcf
tidy-data
updated 2.2 years ago by
Ram
43k • written 9.4 years ago by
Giovanni M Dall'Olio
28k
29
votes
10
replies
3.2k
views
Forum:
How do you perform functional testing for your Bioinformatics tools?
development
testing
bug
reliability
updated 12 months ago by
Ram
43k • written 7.2 years ago by
shenwei356
8.5k
29
votes
18
replies
2.8k
views
12 follow
Forum:
what are the big questions in bioinformatics field nowadays
genome
updated 11 months ago by
Ram
43k • written 4.2 years ago by
t4192
▴ 20
29
votes
10
replies
6.5k
views
10 follow
Forum:
Interesting/useful/beautiful bio sequence viz tools
viz
python
visualisation
updated 14 months ago by
Ram
43k • written 6.2 years ago by
Joe
21k
29
votes
17
replies
2.3k
views
6 follow
Forum:
Can Biostars use question template like Github issue/PR?
meta
biostars
template
updated 13 months ago by
Ram
43k • written 7.2 years ago by
shenwei356
8.5k
29
votes
4
replies
6.9k
views
Forum:
Biostar Vs. Seqanswers: What Is The Difference?
biostars
updated 15 months ago by
Ram
43k • written 11.0 years ago by
jobinv
★ 1.1k
29
votes
18
replies
3.3k
views
7 follow
Forum:
Should I quit PhD program?
education
career
research
phd
updated 12 months ago by
Ram
43k • written 6.0 years ago by
George
▴ 30
29
votes
4
replies
7.9k
views
Forum:
Update to tbb (2021.1.1, conda-forge) breaks bowtie2 (bioconda)
software-error
bowtie2
bioconda
conda
tbb
updated 14 months ago by
Ram
43k • written 3.2 years ago by
mlbendall
▴ 240
29
votes
21
replies
6.3k
views
Forum:
PhD vs Field application scientist in industry
career
updated 13 months ago by
Ram
43k • written 7.8 years ago by
Govi988
▴ 80
28
votes
15
replies
2.3k
views
12 follow
Forum:
Should bioinformaticians learn the scientific names of plants and animals?
sequence
updated 12 months ago by
Ram
43k • written 5.9 years ago by
ivan.radonov
▴ 10
28
votes
31
replies
5.8k
views
8 follow
Forum:
Biostar Ads Are Now Live. Feedback And Comments Are Sought.
biostars
updated 15 months ago by
Ram
43k • written 11.0 years ago by
Istvan Albert
100k
28
votes
11
replies
3.2k
views
9 follow
Forum:
Getting started with NGS analysis, common issues?
software-error
next-gen
updated 2.1 years ago by
Ram
43k • written 9.2 years ago by
Keith
▴ 50
28
votes
14
replies
6.9k
views
9 follow
Forum:
How Do You Use Cloud Computing For Bioinformatics In 2013?
cloud
updated 14 months ago by
Ram
43k • written 10.9 years ago by
Eric Normandeau
11k
28
votes
13
replies
1.5k
views
6 follow
Forum:
Suppose you have a sequencer that can read the genome end-to-end. What aspects of bioinformatics will become irrelevant?
future
updated 17 months ago by
Ram
43k • written 7.6 years ago by
Ayaan
▴ 40
28
votes
15
replies
4.5k
views
8 follow
Forum:
Anyone Use R For Their Bioinformatics Work?
r
updated 14 months ago by
Ram
43k • written 10.6 years ago by
arronslacey
▴ 320
28
votes
13
replies
2.7k
views
Forum:
Are there any workshops which are tailored to non-beginners/intermediate bioinformatics?
workshop
updated 19 months ago by
Ram
43k • written 8.8 years ago by
Daniel
★ 4.0k
28
votes
7
replies
5.3k
views
Forum:
Open Source projects to contribute to
contribute
open-source
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
shane
▴ 90
28
votes
14
replies
8.4k
views
8 follow
Forum:
Should I work first in a Bioinformatics company or get a Ph. D.?
Biochemistry
PhD
career
updated 13 months ago by
Ram
43k • written 8.1 years ago by
mvasquez16
▴ 20
28
votes
7
replies
2.0k
views
Forum:
Do you have favorite icons for bioinformatics?
ubuntu
updated 14 months ago by
Ram
43k • written 3.2 years ago by
kojix2
▴ 250
28
votes
1
reply
6.9k
views
Forum:
Bedops: The Fastest, Most Scalable, And Easily-Parallelizable Genome Analysis Toolkit!
bedops
genome-analysis
updated 15 months ago by
Ram
43k • written 11.0 years ago by
Alex Reynolds
35k
27
votes
19
replies
4.6k
views
10 follow
Forum:
Google genomics cloud platform ?
genome
cloud
updated 14 months ago by
Ram
43k • written 8.9 years ago by
GouthamAtla
12k
27
votes
0
replies
8.1k
views
Forum:
Heng Li of BWA and Samtools uses this
uses-this
updated 14 months ago by
Ram
43k • written 9.6 years ago by
Istvan Albert
100k
27
votes
17
replies
5.2k
views
Forum:
Data sharing via Bittorrent is coming to Biostar
biostars
bittorrent
updated 15 months ago by
Ram
43k • written 9.9 years ago by
Istvan Albert
100k
27
votes
11
replies
3.8k
views
10 follow
Forum:
Which programming language to integrate several open source software into one working pipeline (software)
MEGA
pipeline
updated 2.4 years ago by
Ram
43k • written 9.8 years ago by
benjamin.hebisch
▴ 70
27
votes
21
replies
9.3k
views
9 follow
Forum:
Better for my career: Degree in computer science or Phd in bioinformatics?
computer-science
phd
updated 13 months ago by
Ram
43k • written 7.7 years ago by
BioinfGuru
★ 1.7k
27
votes
22
replies
5.8k
views
8 follow
Forum:
Recommendations of Linux distros for beginners in bioinformatics
training
linux
updated 12 months ago by
Ram
43k • written 6.5 years ago by
ropolocan
▴ 810
27
votes
8
replies
4.8k
views
6 follow
Forum:
PhD in Bioinformatics: to continue, or not to continue? That is the question--
career
updated 14 months ago by
Ram
43k • written 10.0 years ago by
MAPK
★ 2.1k
1,000 results • Page
4 of 20
Recent Votes
A: How To Split One Big Sequence File Into Multiple Files With Less Than 1000 Seque
C: Snakemake vs. Nextflow: strengths and weaknesses
Answer: workflow management system : WDL, CWL, Ruffus, SnakeMake, etc
Sequence alignment on split read event such as inversion, duplication and complex nested events.
ICGEB - SLIBTEC NGS Workshop: Won Best Oral Presentation Award
Comment: Add stats to the plot
Post-doctoral Position in Alzheimer’s Disease Genetics, ‘Omics, and Biomarkers
Recent Locations •
All
Taiwan,
just now
United States,
just now
Australia,
1 minute ago
India,
2 minutes ago
Riyadh,
3 minutes ago
United States,
9 minutes ago
Pakistan,
9 minutes ago
Recent Awards •
All
Scholar
to
Pierre Lindenbaum
161k
Voter
to
Sara
▴ 30
Popular Question
to
carlopecoraro2
★ 2.5k
Popular Question
to
scideas
▴ 30
Popular Question
to
Muhammad
• 0
Popular Question
to
synat.keam
▴ 100
Scholar
to
jv
★ 1.8k
Recent Replies
Comment: What marks a De-Novo Genome assembly as FAILED?
by
nd48
▴ 20
I would urge you to consider different approaches for benchmarking before deciding on one. In particular, I found that assembling long read…
Comment: BiomartException: Query ERROR for existing dataset in BioMart
by
Luqman
• 0
I am using *pybiomart* which has Server inplace of BiomartServer, I used that as per above but still getting the same error. Also, when I a…
Comment: Blastn, need help to increase speed
by
m13113153781
• 0
mmseq2 is indeed a good acceleration solution, but its index files require ~ 6 T space....
Answer: seqtk subseq in.fastq list.txt > out.fastq not extracting full sequence from
by
KHURRAM SHAHZAD
• 0
Thank you it works
Answer: Add stats to the plot
by
Ghada
• 0
I think this is what caused the error. we do not have group 1 and 2 in the statistical test results???? ![enter image description here][…
Answer: scRNA-seq data trained model can be used for predictions on bulk RNA-seq data?
by
Bibi
• 0
@atpoint thanks you for your timely response. Can someone else shed light if we can compare the trend of DEGs using the scRNA and Bulk RNA…
Comment: Add stats to the plot
by
GenoMax
142k
Please use `101010` to format `code` so it is represented in monospace font. I have done this for you now.
Answer: is there a tool to recover corrupted fastq files
by
Tommaso
• 0
You may also want to give a try to **FastqWiper** (https://github.com/mazzalab/fastqwiper)
Comment: Add stats to the plot
by
Ghada
• 0
Thanks. That helpful. I am getting this error data4_test <- data4.ts%>% ungroup() %>% t.test(data =.,value ~ Condition)%>% + …
Comment: scRNA-seq data trained model can be used for predictions on bulk RNA-seq data?
by
ATpoint
82k
I cannot comment here. You are asking why results between two experiments are different. I do not know without seeing the data.
Comment: scRNA-seq data trained model can be used for predictions on bulk RNA-seq data?
by
Bibi
• 0
Thank you so much for this insight. I just want to clarify another point here. I have used scRNA seq data from mice mammary epithelial cell…
Comment: Is it Possible to "Merge" data from Replicates within a VCF SNP File
by
Pierre Lindenbaum
161k
> Cannot read non-existent file: file:///local/home/User/VCF_Filtering/biostar.code your file doesn't exist, is at the wrong place etc.
Comment: Is it Possible to "Merge" data from Replicates within a VCF SNP File
by
ajbarrett98
• 0
Hi Pierre, I am attempting to run this code and am running into this error: (jvar) $ jvarkit vcffilterjdk -f biostar.code Dart_VCF2_Or…
Comment: scRNA-seq data trained model can be used for predictions on bulk RNA-seq data?
by
ATpoint
82k
I cannot give a precise answer, as ML is not my field, but generally, why don't you apply the method to pseudobulks of the exact single-cel…
Answer: geom_bar issue in ggplot2 with xlim()
by
ATpoint
82k
https://stackoverflow.com/questions/10365167/geom-bar-bars-not-displaying-when-specifying-ylim
Traffic: 1605 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6